TCONS_00067281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067281
Unique NameTCONS_00067281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067281 ID=TCONS_00067281|Name=TCONS_00067281|organism=Clytia hemisphaerica|type=transcript|length=343bp
aggctGCATCAAATGAAAGGATTAAAAACGTTCACTTCCCGAAAGAATTC
AGTGGTTTCAAGGGTGATGTATTTACACAAACCAACAAAGTACTTAAAGA
TCACCATGGGTGGCAGGAGTACACCGTCAACAATATCTGGGTTTATGCTA
TTCATGGACGTCTTCCTGTGCAACAACAACGCACTTTCAATTACTTTTTC
CGTCCTTGCCAACTTGTTTGTACAGGAGTTCGAGAGGGAACAAGGTTTGG
ATGCGCTTGAACAACACCTTCACCAATCACTTGCGCTACTGGAGCGAGAT
TTCCCGACGACATTCATGAACATCACCACGCACATCTGCCACC
Run BLAST on NCBI

protein sequence of TCONS_00067281-protein

>TCONS_00067281-protein ID=TCONS_00067281-protein|Name=TCONS_00067281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
RLHQMKGLKTFTSRKNSVVSRVMYLHKPTKYLKITMGGRSTPSTISGFML
FMDVFLCNNNALSITFSVLANLFVQEFEREQGLDALEQHLHQSLALLERD
FPTTFMNITTHICH
Run BLAST on NCBI

transcript from alignment at scaffold_468:101859..102546-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067281 ID=TCONS_00067281|Name=TCONS_00067281|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at scaffold_468:101859..102546- (Clytia hemisphaerica)
AGGCTGCATCAAATGAAAGGATTAAAAACGTTCACTTCCCGAAAGAATTC
AGTGGTTTCAAGGGTGATGTATTTACACAAACCAACAAAGTACTTAAAGA
TCACCATGGGTGGCAGGAGGTATTTTTTTCGTTTAATCAATATTTTAAGA
AATCGTACAACTTTTATTTGAAAAATCTCCAGTGGCATGTCCCGATCAGT
TATCAAGAGCCCTAGGGTCTACAGCCTTTGGAAAATTTAGGAAAAGCGAA
GATCTTCGGAAAATTTGGGTAAATTTGATATATAAAACCCAAAGAATAGA
TAACAGTTTTTCTATCTATATCTATGCCACAGAATTTAAAAGTAAAAAAA
AAACACTTATCTTTTTTTGTTCCNCATATCAGTTTTTCTATCTATATCTA
TGCCACAGAAAGTAAAAGTAAAAAAAAAAACACTTATCTTTTTCTTGTTC
CTTTTTCTTTACAGTACACCGTCAACAATATCTGGGTTTATGCTATTCAT
GGACGTCTTCCTGTGCAACAACAACGCACTTTCAATTACTTTTTCCGTCC
TTGCCAACTTGTTTGTACAGGAGTTCGAGAGGGAACAAGGTTTGGATGCG
CTTGAACAACACCTTCACCAATCACTTGCGCTACTGGAGCGAGATTTCCC
GACGACATTCATGAACATCACCACGCACATCTGCCACC

Coding sequence (CDS) from alignment at scaffold_468:101859..102546-

>TCONS_00067281 ID=TCONS_00067281|Name=TCONS_00067281|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_468:101859..102546- (Clytia hemisphaerica)
TACACCGTCAACAATATCTGGGTTTATGCTATTCATGGACGTCTTCCTGT
GCAACAACAACGCACTTTCAATTACTTTTTCCGTCCTTGCCAACTTGTTT
GTACAGGAGTTCGAGAGGGAACAAGGTTTGGATGCGCTTGAACAACACCT
TCACCAATCACTTGCGCTACTGGAGCGAGATTTCCCGACGACATTCATGA
ACATCACCACGCACATCTGCCACAGGCTGCATCAAATGAAAGGATTAAAA
ACGTTCACTTCCCGAAAGAATTCAGTGGTTTCAAGGGTGATGTATTTACA
CAAACCAACAAAGTACTTAAAGATCACCATGGGTGGCAGGAGTACACCGT
CAACAATATCTGGGTTTATGCTATTCATGGACGTCTTCCTGTGCAACAAC
AACGCACTTTCAATTACTTTTTCCGTCCTTGCCAACTTGTTTGTACAGGA
GTTCGAGAGGGAACAAGGTTTGGATGCGCTTGAACAACACCTTCACCAAT
CACTTGCGCTACTGGAGCGAGATTTCCCGACGACATTCATGAACATCACC
ACGCACATCTGCCACAGGCTGCATCAAATGAAAGGATTAAAAACGTTCAC
TTCCCGAAAGAATTCAGTGGTTTCAAGGGTGATGTATTTACACAAACCAA
CAAAGTACTTAAAGATCACCATGGGTGGCAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042037XLOC_042037Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067281-proteinTCONS_00067281-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067281-exon-scaffold_468-1575043694:102428..102546TCONS_00067281-exon-scaffold_468-1575043694:102428..102546Clytia hemisphaericaexon
TCONS_00067281-exon-scaffold_468-1575043694:101859..102082TCONS_00067281-exon-scaffold_468-1575043694:101859..102082Clytia hemisphaericaexon
TCONS_00067281-exon-scaffold_468-1510915933:102428..102546TCONS_00067281-exon-scaffold_468-1510915933:102428..102546Clytia hemisphaericaexon
TCONS_00067281-exon-scaffold_468-1510915933:101859..102082TCONS_00067281-exon-scaffold_468-1510915933:101859..102082Clytia hemisphaericaexon
TCONS_00067281-exon-scaffold_468-1491911889:102428..102546TCONS_00067281-exon-scaffold_468-1491911889:102428..102546Clytia hemisphaericaexon
TCONS_00067281-exon-scaffold_468-1491911889:101859..102082TCONS_00067281-exon-scaffold_468-1491911889:101859..102082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:101859..102546 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (3.29311 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.258181	0	0	0.357041	0	0	0	0.446213	0.276353	0.536471	0.176327	0.352165	0.182863	1.68695	1.63458	0	3.13872	0.69243	3.29311	1.00267	1.84814	0.607133	0.754958	0	0	0.618316	0	0.857237	0.349479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
aggctGCATCAAATGAAAGGATTAAAAACGTTCACTTCCCGAAAGAATTCAGTGGTTTCAAGGGTGATGTATTTACACAAACCAACAAAGTACTTAAAGATCACCATGGGTGGCAGGAGTACACCGTCAACAATATCTGGGTTTATGCTATTCATGGACGTCTTCCTGTGCAACAACAACGCACTTTCAATTACTTTTTCCGTCCTTGCCAACTTGTTTGTACAGGAGTTCGAGAGGGAACAAGGTTTGGATGCGCTTGAACAACACCTTCACCAATCACTTGCGCTACTGGAGCGAGATTTCCCGACGACATTCATGAACATCACCACGCACATCTGCCACC50100150200250300Sequence
Match NameE-valueIdentityDescription
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