TCONS_00067279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067279
Unique NameTCONS_00067279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067279 ID=TCONS_00067279|Name=TCONS_00067279|organism=Clytia hemisphaerica|type=transcript|length=1358bp
aatttttttgaaatcgtaaacTTAATTTGACAtcagaaaagtaaaaattg
aTTTCAGATATTGCTTTAAAACAGAACTTTGCTTCGAAGGAAAATTTGAG
TAAGAAGGAAACCCAATATTCAATGTCAACTTAATTCTAAAAACATCATC
AGCTGTGAGAATTTCATGGTTGAAatgaattatttcaaaaatatacttcA
CTACATAGAATAAACTGAATTAATAGAAGCTggcaaaaagtaaatttaaa
actaaaaaacttGGTGATGCCCCTCCCCGCATCACTTTGTCCTCTCCTCC
ACCACCACAAGTGAGACAGTCCATACTAATTTAAATATCAACACAACATT
AACTGAAATTATAATGAAAACATCAACAGTAACTTGGAACAACTGTGGAA
atttcattaaagaactttaaaaataaatcatgatGAAAACATCATCAGCA
ATTTTGAAACAGCTGTGGAAATTTCATTGATGAACTCAattatttcaaca
atttttttaacttttttgtttttgtttttttttcttctacttttttttct
ttttttttgtcgatAACTTCTTTGTTTGGTATGCTGCCAAGTACAATGAA
GCAATTCATCCTCCATTCCTTAACCACCTGAATAACATAAGGATCCTCGA
ACCCATCATATGCAACCTGAAACTCGCATTCGTCATCAAATTCGTCATCA
TCTAAGACAGTTATAACATTACCTTCAAACCATTTATCAAAACCATCATC
GTCCCATTTGTGTTTGATCCTTTTACAAAGAAATGTTGGAATTTTGCTTT
CTTTTCCCGGGTTGATTTTTACCTTCTTCGAACTGGATATTTCCTTTACT
AGTCTTGCATCCCCACTTGCATTTAATTCTTCTTTGAGTTTCTTTAGCTT
TTCCTGACGAGGATCATTTTCTTTAACCCGAAAAAAAACATCATGAGCTC
TTTCTGCCGGGGAATTTGACAATTCATCAAAAATATTGCACAAATGGGTC
TTTAACGTTTCTAAGTCATATTTTTTGTACCCTTTTTCACCTTTTCCCCC
TAATTGAAGTAACTTtctatttgaaaaactttgttgCAGAACTTTTTTCC
TAGATGCAATCTGGGCCTGCAAATTATTAGTTGCCTCTTTAACTCCTGCC
TCACAAATTTTCTCAACCATAATCTTATCAGTAAGGAGCCCCCCTACTTT
ATCTAAATTCTTAGTAGCTGTTTCTTTTTCATCACTTATCTTTTGTACCT
TTATCTCCTTTTCCACCTTTTTTCCATCCATGCTATCAATTTTgtattgc
aaaattttggccctcTTAGATCTATTTTCTTTTACtagctttcttttatt
tttccgtG
Run BLAST on NCBI

transcript from alignment at scaffold_468:33393..34812-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067279 ID=TCONS_00067279|Name=TCONS_00067279|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_468:33393..34812- (Clytia hemisphaerica)
AATTTTTTTGAAATCGTAAACTTAATTTGACATCAGAAAAGTAAAAATTG
ATTTCAGATATTGCTTTAAAACAGAACTTTGCTTTGAATNGACATCAGAA
AAGTAAAAATTGATTTCAGATATTGCTTTAAAACAGAACTTTGCTTCGAA
GGAAAATTTGAGTAAGAAGGAAACCCAATATTCAATGTCAACTTAATTCT
AAAAACATCATCAGCTGTGAGAATTTCATGGTTGAAATGAATTATTTCAA
AAATATACTTCACTACATAGAATAAACTGAATTAATAGAAGCTGGCAAAA
AGTAAATTTAAAACTAAAAAACTTGGTGATGCCCCTCCCCGCATCACTTT
GTCCTCTCCTCCACCACCACAAGTGAGACAGTCCATACTAATTTAAATAT
CAACACAACATTAACTGAAATTATAATGAAAACATCAACAGTAACTTGGA
ACAACTGTGGAAATTTCATTAAAGAACTTTAAAAATAAATCATGATGAAA
ACATCATCAGCAATTTTGAAACAGCTGTGGAAATTTCATTGATGAACTCA
ATTATTTCAACAATTTTTTTAACTTTTTTGTTTTTGTTTTTTTTTCTTCT
ACTTTTTTTTCTTTTTTTTTGTCGATAACTTCTTTGTTTGGTATGCTGCC
AAGTACAATGAAGCAATTCATCCTCCATTCCTTAACCACCTGAATAACAT
AAGGATCCTCGAACCCATCATATGCAACCTGAAACTCGCATTCGTCATCA
AATTCGTCATCATCTAAGACAGTTATAACATTACCTTCAAACCATTTATC
AAAACCATCATCGTCCCATTTGTGTTTGATCCTTTTACAAAGAAATGTTG
GAATTTTGCTTTCTTTTCCCGGGTTGATTTTTACCTTCTTCGAACTGGAT
ATTTCCTTTACTAGTCTTGCATCCCCACTTGCATTTAATTCTTCTTTGAG
TTTCTTTAGCTTTTCCTGACGAGGATCATTTTCTTTAACCCGAAAAAAAA
CATCATGAGCTCTTTCTGCCGGGGAATTTGACAATTCATCAAAAATATTG
CACAAATGGGTCTTTAACGTTTCTAAGTCATATTTTTTGTACCCTTTTTC
ACCTTTTCCCCCTAATTGAAGTAACTTTCTATTTGAAAAACTTTGTTGCA
GAACTTTTTTCCTAGATGCAATCTGGGCCTGCAAATTATTAGTTGCCTCT
TTAACTCCTGCCTCACAAATTTTCTCAACCATAATCTTATCAGTAAGGAG
CCCCCCTACTTTATCTAAATTCTTAGTAGCTGTTTCTTTTTCATCACTTA
TCTTTTGTACCTTTATCTCCTTTTCCACCTTTTTTCCATCCATGCTATCA
ATTTTGTATTGCAAAATTTTGGCCCTCTTAGATCTATTTTCTTTTACTAG
CTTTCTTTTATTTTTCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042035XLOC_042035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067279-exon-scaffold_468-1575043694:34782..34812TCONS_00067279-exon-scaffold_468-1575043694:34782..34812Clytia hemisphaericaexon
TCONS_00067279-exon-scaffold_468-1575043694:33393..34719TCONS_00067279-exon-scaffold_468-1575043694:33393..34719Clytia hemisphaericaexon
TCONS_00067279-exon-scaffold_468-1510915933:34782..34812TCONS_00067279-exon-scaffold_468-1510915933:34782..34812Clytia hemisphaericaexon
TCONS_00067279-exon-scaffold_468-1510915933:33393..34719TCONS_00067279-exon-scaffold_468-1510915933:33393..34719Clytia hemisphaericaexon
TCONS_00067279-exon-scaffold_468-1491911889:34782..34812TCONS_00067279-exon-scaffold_468-1491911889:34782..34812Clytia hemisphaericaexon
TCONS_00067279-exon-scaffold_468-1491911889:33393..34719TCONS_00067279-exon-scaffold_468-1491911889:33393..34719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:33393..34812 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.0658081 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0658081	0.0396973	0	0	0	0	0	0	0.0213262	0	0	0.0463586	0	0	0	0	0	0	0	0	0.0295868	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200Sequence
Match NameE-valueIdentityDescription
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