TCONS_00067276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067276
Unique NameTCONS_00067276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067276 ID=TCONS_00067276|Name=TCONS_00067276|organism=Clytia hemisphaerica|type=transcript|length=677bp
TAAAAGATCACAAAATGGGAAATACTTTAACTAATGTACCAAATCCCCGA
TACATGAAAGACGAGGAAACCCAAACAGCACGTATCGCACCGCAGATGGT
TTGTTCGTCCACACAGACGGATGGTGGTCCCGTAATGAATGAAATAGATG
ACCACAGTAACACGACTAATTCTGGGTATCGTGGCCCAATCAAGGGAGGA
GCTGAAACAGTTGATCCGATCTCAGAAAAGGATGGAAAGTGTGAGCGGTT
ACTTTTCACGTTCGCGGTCGTCATCGTCATCTTCTTCACGACATTCGCCT
TATACCAAACTCAAAGATCGTAAAGAACATTAAGACGTTATTGTTGGTTT
GTTGCTCGGTTTGTTCAAGGAACTTGAAGCTCCTTGGTTTATTGCGTTTG
GTTGTTTGCGATCCTAGAGTGCATGCTGAGATtgagatatttttatttga
ttaaaaCTTTTGCTGTTGCGTTACTGCgtcttatttttcgaaaactgtGG
TGGCGTCTACTCATCTAAGTATCGCACTTACCCAGTATTATTACCTCAAA
TTAATTCGTGCCCTTTTTCAGTTATAAAATCAGGTAGTTCACCCTTTTTT
CTAACCTCTTAGGAGACTTCGCGTCAACTATTAGTCATAGATAGTAAAGA
CCTTGGTAGAATGATTGTTAAGCCGTT
Run BLAST on NCBI

transcript from alignment at scaffold_468:123610..124960+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067276 ID=TCONS_00067276|Name=TCONS_00067276|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_468:123610..124960+ (Clytia hemisphaerica)
TAAAAGATCACAAAATGGGAAATACTTTAACTAATGTACCAAATCCCCGA
TACATGAAAGACGAGGAAACCCAAACAGCACGTATCGCACCGCAGATGGT
TTGTTCGTCCACACAGACGGATGGTGGTCCCGTAATGAATGAAATAGATG
ACCACAGTAAGTAAGACAGCTACATTTTGCTTTAACTTTAAATTTGATCA
TTGTCACCCTATCTAATGGGATATAAACTTCTCGTATCTCTATTGTGCGT
GATTGTAAGTTGTTCACTTCTTGGGAACTTTCATTACATTCAAAAATCCA
GCCAAAGGTAAGGGCTTCCGTAGGCaacatttgttttcatttgagattat
ttttgttttcatttgagattatttttgttttcctaTTTCAGCACGACTAA
TTCTGGGTATCGTGGCCCAATCAAGGGAGGAGCTGAAACAGTTGATCCGA
TCTCAGAAAAGGATGGAAAGTGGTACGGAAAATTTCACGAGTTCGTTTTC
CTTTCGGATTgatgaaatacacgttttttataagcatggggtaaattttt
gtgagcctcattatgcttagcaaaattagttttttgagCCTCGAATATGC
CTATCTATGCTATGCGTAAGTGATGGTGCAATTTGTTTGGTGTTNCATTA
GTTTTTTCAGCCTCGAATATGCCTATCTATGCTAAGCGTAAGTGATGGTG
CAATTTGTTTGGTGTTGTTTGTAAATTAGGGGATAaatgctttgaaattt
tgtaaatttgaggCTCAGCATATACTTAGGCGATGCCTAAGTTTTTGCAA
GATTTGAGcctggatatgcttataagcgttatgcttataaaaaacgtgta
gagagCTTCATTAGCTTTTAAAGTGTGATCACAAAAACTAAAATTGCTTT
CAATCTTTCCTTTAGTGAGCGGTTACTTTTCACGTTCGCGGTCGTCATCG
TCATCTTCTTCACGACATTCGCCTTATACCAAACTCAAAGATCGTAAAGA
ACATTAAGACGTTATTGTTGGTTTGTTGCTCGGTTTGTTCAAGGAACTTG
AAGCTCCTTGGTTTATTGCGTTTGGTTGTTTGCGATCCTAGAGTGCATGC
TGAGATtgagatatttttatttgattaaaaCTTTTGCTGTTGCGTTACTG
CgtcttatttttcgaaaactgtGGTGGCGTCTACTCATCTAAGTATCGCA
CTTACCCAGTATTATTACCTCAAATTAATTCGTGCCCTTTTTCAGTTATA
AAATCAGGTAGTTCACCCTTTTTTCTAACCTCTTAGGAGACTTCGCGTCA
ACTATTAGTCATAGATAGTAAAGACCTTGGTAGAATGATTGTTAAGCCGT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042032XLOC_042032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067276-exon-scaffold_468-1491911889:123610..123769TCONS_00067276-exon-scaffold_468-1491911889:123610..123769Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1510915933:123610..123769TCONS_00067276-exon-scaffold_468-1510915933:123610..123769Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1575043694:123610..123769TCONS_00067276-exon-scaffold_468-1575043694:123610..123769Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1491911889:124001..124081TCONS_00067276-exon-scaffold_468-1491911889:124001..124081Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1510915933:124001..124081TCONS_00067276-exon-scaffold_468-1510915933:124001..124081Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1575043694:124001..124081TCONS_00067276-exon-scaffold_468-1575043694:124001..124081Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1491911889:124525..124960TCONS_00067276-exon-scaffold_468-1491911889:124525..124960Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1510915933:124525..124960TCONS_00067276-exon-scaffold_468-1510915933:124525..124960Clytia hemisphaericaexon
TCONS_00067276-exon-scaffold_468-1575043694:124525..124960TCONS_00067276-exon-scaffold_468-1575043694:124525..124960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_468supercontigscaffold_468:123610..124960 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.155585 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.000105591	3.4918e-05	4.99688e-05	1.39509e-05	0	0	3.95081e-05	0	4.84579e-06	8.34173e-07	1.03092e-06	0	3.99825e-06	1.39699e-06	0	0	0	0	9.24971e-07	2.92574e-07	5.78872e-05	6.70031e-05	0.155585	0.110935	1.0011e-06	1.23975e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600Sequence
Match NameE-valueIdentityDescription
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