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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067275 ID=TCONS_00067275|Name=TCONS_00067275|organism=Clytia hemisphaerica|type=transcript|length=673bp
TAAAAGATCACAAAATGGGAAATACTTTAACTAATGTACCAAATCCCCGA
TACATGAAAGACGAGGAAACCCAAACAGCACGTATCGCACCGCAGATGGT
TTGTTCGTCCACACAGACGGATGGTGGTCCCGTAATGAATGAAATAGATG
ACCACACACGACTAATTCTGGGTATCGTGGCCCAATCAAGGGAGGAGCTG
AAACAGTTGATCCGATCTCAGAAAAGGATGGAAAGTGTGAGCGGTTACTT
TTCACGTTCGCGGTCGTCATCGTCATCTTCTTCACGACATTCGCCTTATA
CCAAACTCAAAGATCGTAAAGAACATTAAGACGTTATTGTTGGTTTGTTG
CTCGGTTTGTTCAAGGAACTTGAAGCTCCTTGGTTTATTGCGTTTGGTTG
TTTGCGATCCTAGAGTGCATGCTGAGATtgagatatttttatttgattaa
aaCTTTTGCTGTTGCGTTACTGCgtcttatttttcgaaaactgtGGTGGC
GTCTACTCATCTAAGTATCGCACTTACCCAGTATTATTACCTCAAATTAA
TTCGTGCCCTTTTTCAGTTATAAAATCAGGTAGTTCACCCTTTTTTCTAA
CCTCTTAGGAGACTTCGCGTCAACTATTAGTCATAGATAGTAAAGACCTT
GGTAGAATGATTGTTAAGCCGTT Run BLAST on NCBI protein sequence of TCONS_00067275-protein >TCONS_00067275-protein ID=TCONS_00067275-protein|Name=TCONS_00067275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
KDHKMGNTLTNVPNPRYMKDEETQTARIAPQMVCSSTQTDGGPVMNEIDD
HTRLILGIVAQSREELKQLIRSQKRMESVSGYFSRSRSSSSSSSRHSPYT
KLKDRKEH Run BLAST on NCBI transcript from alignment at scaffold_468:123610..124960+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067275 ID=TCONS_00067275|Name=TCONS_00067275|organism=Clytia hemisphaerica|type=transcript|length=1351bp|location=Sequence derived from alignment at scaffold_468:123610..124960+ (Clytia hemisphaerica)
TAAAAGATCACAAAATGGGAAATACTTTAACTAATGTACCAAATCCCCGA
TACATGAAAGACGAGGAAACCCAAACAGCACGTATCGCACCGCAGATGGT
TTGTTCGTCCACACAGACGGATGGTGGTCCCGTAATGAATGAAATAGATG
ACCACAGTAAGTAAGACAGCTACATTTTGCTTTAACTTTAAATTTGATCA
TTGTCACCCTATCTAATGGGATATAAACTTCTCGTATCTCTATTGTGCGT
GATTGTAAGTTGTTCACTTCTTGGGAACTTTCATTACATTCAAAAATCCA
GCCAAAGGTAAGGGCTTCCGTAGGCaacatttgttttcatttgagattat
ttttgttttcatttgagattatttttgttttcctaTTTCAGCACGACTAA
TTCTGGGTATCGTGGCCCAATCAAGGGAGGAGCTGAAACAGTTGATCCGA
TCTCAGAAAAGGATGGAAAGTGGTACGGAAAATTTCACGAGTTCGTTTTC
CTTTCGGATTgatgaaatacacgttttttataagcatggggtaaattttt
gtgagcctcattatgcttagcaaaattagttttttgagCCTCGAATATGC
CTATCTATGCTATGCGTAAGTGATGGTGCAATTTGTTTGGTGTTNCATTA
GTTTTTTCAGCCTCGAATATGCCTATCTATGCTAAGCGTAAGTGATGGTG
CAATTTGTTTGGTGTTGTTTGTAAATTAGGGGATAaatgctttgaaattt
tgtaaatttgaggCTCAGCATATACTTAGGCGATGCCTAAGTTTTTGCAA
GATTTGAGcctggatatgcttataagcgttatgcttataaaaaacgtgta
gagagCTTCATTAGCTTTTAAAGTGTGATCACAAAAACTAAAATTGCTTT
CAATCTTTCCTTTAGTGAGCGGTTACTTTTCACGTTCGCGGTCGTCATCG
TCATCTTCTTCACGACATTCGCCTTATACCAAACTCAAAGATCGTAAAGA
ACATTAAGACGTTATTGTTGGTTTGTTGCTCGGTTTGTTCAAGGAACTTG
AAGCTCCTTGGTTTATTGCGTTTGGTTGTTTGCGATCCTAGAGTGCATGC
TGAGATtgagatatttttatttgattaaaaCTTTTGCTGTTGCGTTACTG
CgtcttatttttcgaaaactgtGGTGGCGTCTACTCATCTAAGTATCGCA
CTTACCCAGTATTATTACCTCAAATTAATTCGTGCCCTTTTTCAGTTATA
AAATCAGGTAGTTCACCCTTTTTTCTAACCTCTTAGGAGACTTCGCGTCA
ACTATTAGTCATAGATAGTAAAGACCTTGGTAGAATGATTGTTAAGCCGT
T Coding sequence (CDS) from alignment at scaffold_468:123610..124960+ >TCONS_00067275 ID=TCONS_00067275|Name=TCONS_00067275|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_468:123610..124960+ (Clytia hemisphaerica)
AAAGATCACAAAATGGGAAATACTTTAACTAATGTACCAAATCCCCGATA
CATGAAAGACGAGGAAACCCAAACAGCACGTATCGCACCGCAGATGGTTT
GTTCGTCCACACAGACGGATGGTGGTCCCGTAATGAATGAAATAGATGAC
CACACACGACTAATTCTGGGTATCGTGGCCCAATCAAGGGAGGAGCTGAA
ACAGTTGATCCGATCTCAGAAAAGGATGGAAAGTGTGAGCGGTTACTTTT
CACGTTCGCGGTCGTCATCGTCATCTTCTTCACGACATTCGCCTTATACC
AAACTCAAAGATCGTAAAGAACATTAAAAAGATCACAAAATGGGAAATAC
TTTAACTAATGTACCAAATCCCCGATACATGAAAGACGAGGAAACCCAAA
CAGCACGTATCGCACCGCAGATGGTTTGTTCGTCCACACAGACGGATGGT
GGTCCCGTAATGAATGAAATAGATGACCACACACGACTAATTCTGGGTAT
CGTGGCCCAATCAAGGGAGGAGCTGAAACAGTTGATCCGATCTCAGAAAA
GGATGGAAAGTGTGAGCGGTTACTTTTCACGTTCGCGGTCGTCATCGTCA
TCTTCTTCACGACATTCGCCTTATACCAAACTCAAAGATCGTAAAGAACA
TTAAAAAGATCACAAAATGGGAAATACTTTAACTAATGTACCAAATCCCC
GATACATGAAAGACGAGGAAACCCAAACAGCACGTATCGCACCGCAGATG
GTTTGTTCGTCCACACAGACGGATGGTGGTCCCGTAATGAATGAAATAGA
TGACCACACACGACTAATTCTGGGTATCGTGGCCCAATCAAGGGAGGAGC
TGAAACAGTTGATCCGATCTCAGAAAAGGATGGAAAGTGTGAGCGGTTAC
TTTTCACGTTCGCGGTCGTCATCGTCATCTTCTTCACGACATTCGCCTTA
TACCAAACTCAAAGATCGTAAAGAACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067275-exon-scaffold_468-1491911889:123610..123765 | TCONS_00067275-exon-scaffold_468-1491911889:123610..123765 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1510915933:123610..123765 | TCONS_00067275-exon-scaffold_468-1510915933:123610..123765 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1575043694:123610..123765 | TCONS_00067275-exon-scaffold_468-1575043694:123610..123765 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1491911889:124001..124081 | TCONS_00067275-exon-scaffold_468-1491911889:124001..124081 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1510915933:124001..124081 | TCONS_00067275-exon-scaffold_468-1510915933:124001..124081 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1575043694:124001..124081 | TCONS_00067275-exon-scaffold_468-1575043694:124001..124081 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1491911889:124525..124960 | TCONS_00067275-exon-scaffold_468-1491911889:124525..124960 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1510915933:124525..124960 | TCONS_00067275-exon-scaffold_468-1510915933:124525..124960 | Clytia hemisphaerica | exon |
| TCONS_00067275-exon-scaffold_468-1575043694:124525..124960 | TCONS_00067275-exon-scaffold_468-1575043694:124525..124960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_468 | supercontig | scaffold_468:123610..124960 + |
Blast
The following BLAST results are available for this feature:
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