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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067274 ID=TCONS_00067274|Name=TCONS_00067274|organism=Clytia hemisphaerica|type=transcript|length=1241bp
atatacctcttgggaataccttgctaacaacgtcaaaacttcgacaaaag
tctctgttgttctactcccCACAAgttttttatctatatcataacaaaga
taatagaggcaaaatcatcgccagctccgactaatatttctaaattttga
ctcaaaagtaaaaaattagGAGAAAAAATTAACTCTAACTCTATGCAATG
AATCAACGTGTTTGAATACCCGGCatttattatttcattatttttctaat
aaGGTAATACGAGAACTTAAGATGACTGACACAGAGGAGGTACGAGACAA
AATGTGGACATCCCTCGGTTCGAAAATAAGGAGACAAAAGGAAACAGACA
AAATCAGGAAGATCGCAAGAAGTAAAGGGGTATCGACCTCGCAAGCTCGA
AGGGAGCGAGCGCAAACAAGAAAAGCGGGGAAGGACAAGAAGCAACGAAG
AAATGTACGGAAAGATATGGGTTTACTATCGGAAAGCGAAAATGAAATGA
ATATCGATGAACCGAACGAAGAACCGCACGAAGAACCGAACGAAGAACCG
CACGAAAAACCGAACGAAGAACCGCACGAAAAACCGAACGAAGAACCGCA
CGAAAAACCGAACGAAGAACCGAAAGAACTCGATATGATGattgacgaag
aagaagaagtcgAAGTGTCGCTTGATACCAAATCTTTAGAAATCGGCGAT
TTTGTAGCCACTGCCTACACGACCAAAGTCGAATTTGCAAAAGTCTCCGC
ACCGGTCCATGGCAATCACGTCATCTCGTTGACTTATTTATCGGCAGTCG
ACAAGGAATCTccgaaatttattttcaaaaaacgacCACCTACTACAAGT
AGCGCCGCCATCATGGTATTTTCACGAGTAGAGGTGGACGAAATGGTAGA
GGAGGACAACAAGGGAAAAGTGCGGAACTACTACTTAGTAAAAAACATTG
AGACCATAGAAAAACGCTTTAAACgcttcaaagaaaaaagtcGTAACGTT
AAGTAACCTTTTGTGATCGGCTGACAAAGGAGAATTAAGTGAAAATTCGA
AATTATTTGGTATGGTTGCTCGACGTTTAGGcttctttctttgatttttt
ttgtttttagtatGTAGTAGTGGGCTATTTAGGCCGTGGCCAGtggattg
ttattgtttcaaaaatatagaaaaaaattcaaaatgtctgtgACCAAATT
TTTGATACGTTTCttactcaatttgagggtgctgattcgga Run BLAST on NCBI protein sequence of TCONS_00067274-protein >TCONS_00067274-protein ID=TCONS_00067274-protein|Name=TCONS_00067274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MTDTEEVRDKMWTSLGSKIRRQKETDKIRKIARSKGVSTSQARRERAQTR
KAGKDKKQRRNVRKDMGLLSESENEMNIDEPNEEPHEEPNEEPHEKPNEE
PHEKPNEEPHEKPNEEPKELDMMIDEEEEVEVSLDTKSLEIGDFVATAYT
TKVEFAKVSAPVHGNHVISLTYLSAVDKESPKFIFKKRPPTTSSAAIMVF
SRVEVDEMVEEDNKGKVRNYYLVKNIETIEKRFKRFKEKSRNVK Run BLAST on NCBI transcript from alignment at scaffold_468:111294..113242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067274 ID=TCONS_00067274|Name=TCONS_00067274|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at scaffold_468:111294..113242+ (Clytia hemisphaerica)
atatacctcttgggaataccttgctaacaacgtcaaaacttcgacaaaag
tctctgttgttctactcccCACAAgttttttatctatatcataacaaaga
taatagaggcaaaatcatcgccagctccgactaatatttctaaattttga
ctcaaaagtaaaaaattagGAGAAAAAATTAACTCTAACTCTATGCAATG
AATCAACGTGTTTGAATACCCGGCatttattatttcattatttttctaat
aaGGTAATACGAGAACTTAAGATGACTGACACAGAGGAGGTACGAGACAA
AATGTGGACATCCCTCGGTTCGAAAATAAGGAGACAAAAGGAAACAGACA
AAATCAGGTATGTAGAGAATTAgcttcctattcataaattcATCTTGAAG
TTTGTTACTTTTGCAGTGTtcatttttgagagcttttgtCAATTACATTC
CCACAATATTTTTTGATGACATCGGCTATCtagaaaattttacattttga
aGCCACGTTAGAAAGGTGACCCTTGAAAAGTACtatttcaaaatggtact
taagaatgtcctgggtggaacattttcgaaaaattaatagacgatatcgg
ctttccggattctccccgaatgattacccatgatgcattgcacaAAAGAT
TTACGGAAAGTGAAtttcgtccgtgaatttttttgcgcattgcatcatgg
gtaatcattcggggagaattcggagaGTTGAAATCGTCTATTAGCGAgag
gggacggctattaggtaNcggaaagtcaatatcgtccgagaattcggaaa
gcccaTATCGTCTATTAGCGGGAGGCTATTAGTTTCCCGAGAGTAATTAG
TCATATTCTTACATTGATTCGATGTAATATTGTCAAAAGATTCGTTGTCT
ACTTCCCTGTCTCATTGATccgattttcaaaatatgaataatGAATTTTC
CCAGCTTCGAGAATAGATGCTTAGCATCAAGCTTATTCTTTTTACAAATT
TGCTGGACTAATATCTAAACTGAAGTATTATGAGTTTATTgtatctcaaa
aaaaattttctatagGAAGATCGCAAGAAGTAAAGGGGTATCGACCTCGC
AAGCTCGAAGGGAGCGAGCGCAAACAAGAAAAGCGGGGAAGGACAAGAAG
CAACGAAGAAATGTACGGAAAGATATGGGTTTACTATCGGAAAGCGAAAA
TGAAATGAATATCGATGAACCGAACGAAGAACCGCACGAAGAACCGAACG
AAGAACCGCACGAAAAACCGAACGAAGAACCGCACGAAAAACCGAACGAA
GAACCGCACGAAAAACCGAACGAAGAACCGAAAGAACTCGATATGATGat
tgacgaagaagaagaagtcgAAGTGTCGCTTGATACCAAATCTTTAGAAA
TCGGCGATTTTGTAGCCACTGCCTACACGACCAAAGTCGAATTTGCAAAA
GTCTCCGCACCGGTCCATGGCAATCACGTCATCTCGTTGACTTATTTATC
GGCAGTCGACAAGGAATCTccgaaatttattttcaaaaaacgacCACCTA
CTACAAGTAGCGCCGCCATCATGGTATTTTCACGAGTAGAGGTGGACGAA
ATGGTAGAGGAGGACAACAAGGGAAAAGTGCGGAACTACTACTTAGTAAA
AAACATTGAGACCATAGAAAAACGCTTTAAACgcttcaaagaaaaaagtc
GTAACGTTAAGTAACCTTTTGTGATCGGCTGACAAAGGAGAATTAAGTGA
AAATTCGAAATTATTTGGTATGGTTGCTCGACGTTTAGGcttctttcttt
gattttttttgtttttagtatGTAGTAGTGGGCTATTTAGGCCGTGGCCA
Gtggattgttattgtttcaaaaatatagaaaaaaattcaaaatgtctgtg
ACCAAATTTTTGATACGTTTCttactcaatttgagggtgctgattcgga Coding sequence (CDS) from alignment at scaffold_468:111294..113242+ >TCONS_00067274 ID=TCONS_00067274|Name=TCONS_00067274|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_468:111294..113242+ (Clytia hemisphaerica)
ATGACTGACACAGAGGAGGTACGAGACAAAATGTGGACATCCCTCGGTTC
GAAAATAAGGAGACAAAAGGAAACAGACAAAATCAGGAAGATCGCAAGAA
GTAAAGGGGTATCGACCTCGCAAGCTCGAAGGGAGCGAGCGCAAACAAGA
AAAGCGGGGAAGGACAAGAAGCAACGAAGAAATGTACGGAAAGATATGGG
TTTACTATCGGAAAGCGAAAATGAAATGAATATCGATGAACCGAACGAAG
AACCGCACGAAGAACCGAACGAAGAACCGCACGAAAAACCGAACGAAGAA
CCGCACGAAAAACCGAACGAAGAACCGCACGAAAAACCGAACGAAGAACC
GAAAGAACTCGATATGATGattgacgaagaagaagaagtcgAAGTGTCGC
TTGATACCAAATCTTTAGAAATCGGCGATTTTGTAGCCACTGCCTACACG
ACCAAAGTCGAATTTGCAAAAGTCTCCGCACCGGTCCATGGCAATCACGT
CATCTCGTTGACTTATTTATCGGCAGTCGACAAGGAATCTccgaaattta
ttttcaaaaaacgacCACCTACTACAAGTAGCGCCGCCATCATGGTATTT
TCACGAGTAGAGGTGGACGAAATGGTAGAGGAGGACAACAAGGGAAAAGT
GCGGAACTACTACTTAGTAAAAAACATTGAGACCATAGAAAAACGCTTTA
AACgcttcaaagaaaaaagtcGTAACGTTAAGTAAATGACTGACACAGAG
GAGGTACGAGACAAAATGTGGACATCCCTCGGTTCGAAAATAAGGAGACA
AAAGGAAACAGACAAAATCAGGAAGATCGCAAGAAGTAAAGGGGTATCGA
CCTCGCAAGCTCGAAGGGAGCGAGCGCAAACAAGAAAAGCGGGGAAGGAC
AAGAAGCAACGAAGAAATGTACGGAAAGATATGGGTTTACTATCGGAAAG
CGAAAATGAAATGAATATCGATGAACCGAACGAAGAACCGCACGAAGAAC
CGAACGAAGAACCGCACGAAAAACCGAACGAAGAACCGCACGAAAAACCG
AACGAAGAACCGCACGAAAAACCGAACGAAGAACCGAAAGAACTCGATAT
GATGattgacgaagaagaagaagtcgAAGTGTCGCTTGATACCAAATCTT
TAGAAATCGGCGATTTTGTAGCCACTGCCTACACGACCAAAGTCGAATTT
GCAAAAGTCTCCGCACCGGTCCATGGCAATCACGTCATCTCGTTGACTTA
TTTATCGGCAGTCGACAAGGAATCTccgaaatttattttcaaaaaacgac
CACCTACTACAAGTAGCGCCGCCATCATGGTATTTTCACGAGTAGAGGTG
GACGAAATGGTAGAGGAGGACAACAAGGGAAAAGTGCGGAACTACTACTT
AGTAAAAAACATTGAGACCATAGAAAAACGCTTTAAACgcttcaaagaaa
aaagtcGTAACGTTAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067274-exon-scaffold_468-1491911889:111294..111650 | TCONS_00067274-exon-scaffold_468-1491911889:111294..111650 | Clytia hemisphaerica | exon |
| TCONS_00067274-exon-scaffold_468-1510915933:111294..111650 | TCONS_00067274-exon-scaffold_468-1510915933:111294..111650 | Clytia hemisphaerica | exon |
| TCONS_00067274-exon-scaffold_468-1575043694:111294..111650 | TCONS_00067274-exon-scaffold_468-1575043694:111294..111650 | Clytia hemisphaerica | exon |
| TCONS_00067274-exon-scaffold_468-1491911889:112359..113242 | TCONS_00067274-exon-scaffold_468-1491911889:112359..113242 | Clytia hemisphaerica | exon |
| TCONS_00067274-exon-scaffold_468-1510915933:112359..113242 | TCONS_00067274-exon-scaffold_468-1510915933:112359..113242 | Clytia hemisphaerica | exon |
| TCONS_00067274-exon-scaffold_468-1575043694:112359..113242 | TCONS_00067274-exon-scaffold_468-1575043694:112359..113242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_468 | supercontig | scaffold_468:111294..113242 + |
Blast
The following BLAST results are available for this feature:
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