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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067268 ID=TCONS_00067268|Name=TCONS_00067268|organism=Clytia hemisphaerica|type=transcript|length=1460bp
AGgaacacttttttgaaaatttcctacGAAGGAGTGTTGAAAGAGATTGA
AACAATCCAAATACGGGCATGAGTGTCCTCTGCTGGATATGAAATTACTG
AATCGAGCGTGATAATGAATCAATTAATTACCTCAAATGTTCCAGTATAA
ATAACCATACCCTACGGatgaaacaaacaaacaaataaacaaacatCAAA
GATGAAGACACTTCAAGTATTTTTGATTCTCAGCATAGCTACGGCCTATA
TGGTCAGCAGTAAAGAGAATTTTCATTCCCACGATGAAGATGGAGGTGGT
GATGCCGAACAACCAGTACAAGCACCAGGAGCCGATCAAGAAAGATATGA
CGAGCTCGTTGATAAAGTAGCATCGCGTGTTCTTGACAAGATACGAAGTG
AAAGCGATgacgaaaatgaagatgaagaggAACAcgattttaagaacatt
gaagAAACAAAAAGCGATCCTATATGGGGAagtggaagaagaagaagaag
acgcATATTTTTCCGAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGCG
ATGAGCTACCGAAGAAGAATGACGACGAAGAAGCAAATGAAGATGAAGAG
GAACACGATTTGAAGAACATTGAAGAAACAAAAAACGATCCCAAAGCAtg
gagaaggagaagaagaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGTT
AATAAATGAAACTGTTATATGAATACAGTTGGTGCTCTCTAATTCCACGT
TCTACttttcgataggctcccttattcgatggaatttaaagtccccgtca
acaagaaactctcataaatgacGCTCCCTTTTTCGATAAGCTCTCTTATT
CGAAGAAagtccaattccccttgaagatcgaattagagagcgccaaCTGT
AATTACAATTTTGCACTCTTATTAGTAatattatataatattttataatt
ttacgGACTTATTTACTTCATTTATAACACACGGGAAAATGGTTAAATTT
AGTTACTTGACGCCGATTCTTTACCTGATAGACCGAATCCGATTCCGTGA
TTCGAAACAAATATCGCCTATATGATTTGTAACGTCCATTATGAATATAA
TATTAATCTTTAATTAactaaatcgaaatatgaatcgTTCCATTTTCATT
AGATAACGTTATATTTCATTTGTAATGTCTACCAGCAacaatacattttt
tttaattgtccaCCCTACTAGGTTTgtgaggtgacgggtatgtcccagac
aaaaatcgaaaatcgacccttagagaaagGGAAAATTGGCGTTTatggga
cccttagagagacttttctcaaattttttatcgattttcactCAATTTTT
GTCCACATTTTGGAAAATCACGACCCTTAGGGAGAGGAAATTTTTAATAT
CGTTATTTTTTGGACCCTTACACAgactaaattttctttttaatggtttt
tgtacccctt Run BLAST on NCBI protein sequence of TCONS_00067268-protein >TCONS_00067268-protein ID=TCONS_00067268-protein|Name=TCONS_00067268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MKTLQVFLILSIATAYMVSSKENFHSHDEDGGGDAEQPVQAPGADQERYD
ELVDKVASRVLDKIRSESDDENEDEEEHDFKNIEETKSDPIWGSGRRRRR
RIFFRRVAGIYPGKRRDELPKKNDDEEANEDEEEHDLKNIEETKNDPKAW
RRRRRRRFLRRFRFRG Run BLAST on NCBI transcript from alignment at scaffold_467:4921..7281+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067268 ID=TCONS_00067268|Name=TCONS_00067268|organism=Clytia hemisphaerica|type=transcript|length=2361bp|location=Sequence derived from alignment at scaffold_467:4921..7281+ (Clytia hemisphaerica)
AGgaacacttttttgaaaatttcctacGAAGGAGTGTTGAAAGAGATTGA
AACAATCCAAATACGGGCATGAGTGTCCTCTGCTGGATATGAAATTACTG
AATCGAGCGTGATAATGAATCAATTAATTACCTCAAATGTTCCAGTATAA
ATAACCATACCCTACGGatgaaacaaacaaacaaataaacaaacatCAAA
GATGAAGACACTTCAAGTATTTTTGATTCTCAGCATAGCTACGGCCTATA
TGGGTAAGAATGACAGCTTAATCTTCTACAAATTATaggaaacaaaattg
aaaaatcttctgtaTGACCATCAAACCAACAAAAAGCTCTATATCTAAAA
AGAAATTCTCGACTACAATTGGAGAAAGAATTTTATGATAACAATAGGTT
TGACAATCtttcaaaatacaaaacaaaactaaaacatTTCATTATCATTC
AACCTCTCACCGTGAAAAATACGAGTAAAATAATACACAACTTAAATTCC
CctctttttgaccttttttgtcACTCTTATTTTTCTAGTCAGCAGTAAAG
AGAATTTTCATTCCCACGATGAAGATGGAGGTGGTGATGCCGAACAACCA
GTACAAGCACCAGGAGCCGATCAAGAAAGATATGACGAGCTCGTTGATAA
AGTAGCATCGCGTGTTCTTGACAGTAAgtgttttttatatttgttttgtt
tacaacATGTTTGGAAAAAAGGGTAATATGATTTTGCTGCGAAGGCGCTT
TGTTGTTATACAAGTTGCACGACATCTACCTGATGAGGTACTCTCTGATT
CTTTGGCAAAGAATAACATAAGGAAAGGTTTAATCATTTAATCCGATTTT
TATAGTACAAGGCAAGGCTAGTAAGCATGATTTATCTGTAGTANTTATAC
AAGTTGCACGACATCTACCTGATGAGGTACTCTCTGATTCTTTGGCAAAG
AATAACATAAGGAAAGGTTTAATCATTTAATCCGATTTTTATAGTACAAG
GCAAGGCTAGTAAGCACGATTTATCTGTAGTATGTGATACTAGTAAATTA
AGACACGAAGTACGGttgacgttctctaattcgatcttcaagggtaatta
gattttcatcggaTAAGGGCGGAGcgttgtttatgagagtttcttgtaaa
cagtgactttaaatatttttgagtaaGGGAGCTTTTcgaataaaacatca
aattagagagcgtcaactgtatgtgtTTATGAACCATGCAAGTAATTAAT
ATACATGTATCCTAATTCTTACTTTCTTTTGTAAAATAGAGATACGAAGT
GAAAGCGATgacgaaaatgaagatgaagaggAACAcgattttaagaacat
tgaagAAACAAAAAGCGATCCTATATGGGGAagtggaagaagaagaagaa
gacgcATATTTTTCCGAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGC
GATGAGCTACCGAAGAAGAATGACGACGAAGAAGCAAATGAAGATGAAGA
GGAACACGATTTGAAGAACATTGAAGAAACAAAAAACGATCCCAAAGCAt
ggagaaggagaagaagaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGT
TAATAAATGAAACTGTTATATGAATACAGTTGGTGCTCTCTAATTCCACG
TTCTACttttcgataggctcccttattcgatggaatttaaagtccccgtc
aacaagaaactctcataaatgacGCTCCCTTTTTCGATAAGCTCTCTTAT
TCGAAGAAagtccaattccccttgaagatcgaattagagagcgccaaCTG
TAATTACAATTTTGCACTCTTATTAGTAatattatataatattttataat
tttacgGACTTATTTACTTCATTTATAACACACGGGAAAATGGTTAAATT
TAGTTACTTGACGCCGATTCTTTACCTGATAGACCGAATCCGATTCCGTG
ATTCGAAACAAATATCGCCTATATGATTTGTAACGTCCATTATGAATATA
ATATTAATCTTTAATTAactaaatcgaaatatgaatcgTTCCATTTTCAT
TAGATAACGTTATATTTCATTTGTAATGTCTACCAGCAacaatacatttt
ttttaattgtccaCCCTACTAGGTTTgtgaggtgacgggtatgtcccaga
caaaaatcgaaaatcgacccttagagaaagGGAAAATTGGCGTTTatggg
acccttagagagacttttctcaaattttttatcgattttcactCAATTTT
TGTCCACATTTTGGAAAATCACGACCCTTAGGGAGAGGAAATTTTTAATA
TCGTTATTTTTTGGACCCTTACACAgactaaattttctttttaatggttt
ttgtacccctt Coding sequence (CDS) from alignment at scaffold_467:4921..7281+ >TCONS_00067268 ID=TCONS_00067268|Name=TCONS_00067268|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_467:4921..7281+ (Clytia hemisphaerica)
ATGAAGACACTTCAAGTATTTTTGATTCTCAGCATAGCTACGGCCTATAT
GGTCAGCAGTAAAGAGAATTTTCATTCCCACGATGAAGATGGAGGTGGTG
ATGCCGAACAACCAGTACAAGCACCAGGAGCCGATCAAGAAAGATATGAC
GAGCTCGTTGATAAAGTAGCATCGCGTGTTCTTGACAAGATACGAAGTGA
AAGCGATgacgaaaatgaagatgaagaggAACAcgattttaagaacattg
aagAAACAAAAAGCGATCCTATATGGGGAagtggaagaagaagaagaaga
cgcATATTTTTCCGAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGCGA
TGAGCTACCGAAGAAGAATGACGACGAAGAAGCAAATGAAGATGAAGAGG
AACACGATTTGAAGAACATTGAAGAAACAAAAAACGATCCCAAAGCAtgg
agaaggagaagaagaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGTTA
AATGAAGACACTTCAAGTATTTTTGATTCTCAGCATAGCTACGGCCTATA
TGGTCAGCAGTAAAGAGAATTTTCATTCCCACGATGAAGATGGAGGTGGT
GATGCCGAACAACCAGTACAAGCACCAGGAGCCGATCAAGAAAGATATGA
CGAGCTCGTTGATAAAGTAGCATCGCGTGTTCTTGACAAGATACGAAGTG
AAAGCGATgacgaaaatgaagatgaagaggAACAcgattttaagaacatt
gaagAAACAAAAAGCGATCCTATATGGGGAagtggaagaagaagaagaag
acgcATATTTTTCCGAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGCG
ATGAGCTACCGAAGAAGAATGACGACGAAGAAGCAAATGAAGATGAAGAG
GAACACGATTTGAAGAACATTGAAGAAACAAAAAACGATCCCAAAGCAtg
gagaaggagaagaagaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGTT
AAATGAAGACACTTCAAGTATTTTTGATTCTCAGCATAGCTACGGCCTAT
ATGGTCAGCAGTAAAGAGAATTTTCATTCCCACGATGAAGATGGAGGTGG
TGATGCCGAACAACCAGTACAAGCACCAGGAGCCGATCAAGAAAGATATG
ACGAGCTCGTTGATAAAGTAGCATCGCGTGTTCTTGACAAGATACGAAGT
GAAAGCGATgacgaaaatgaagatgaagaggAACAcgattttaagaacat
tgaagAAACAAAAAGCGATCCTATATGGGGAagtggaagaagaagaagaa
gacgcATATTTTTCCGAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGC
GATGAGCTACCGAAGAAGAATGACGACGAAGAAGCAAATGAAGATGAAGA
GGAACACGATTTGAAGAACATTGAAGAAACAAAAAACGATCCCAAAGCAt
ggagaaggagaagaagaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067268-exon-scaffold_467-1491911889:4921..5173 | TCONS_00067268-exon-scaffold_467-1491911889:4921..5173 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1510915933:4921..5173 | TCONS_00067268-exon-scaffold_467-1510915933:4921..5173 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1575043694:4921..5173 | TCONS_00067268-exon-scaffold_467-1575043694:4921..5173 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1491911889:5459..5593 | TCONS_00067268-exon-scaffold_467-1491911889:5459..5593 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1510915933:5459..5593 | TCONS_00067268-exon-scaffold_467-1510915933:5459..5593 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1575043694:5459..5593 | TCONS_00067268-exon-scaffold_467-1575043694:5459..5593 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1491911889:6210..7281 | TCONS_00067268-exon-scaffold_467-1491911889:6210..7281 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1510915933:6210..7281 | TCONS_00067268-exon-scaffold_467-1510915933:6210..7281 | Clytia hemisphaerica | exon |
| TCONS_00067268-exon-scaffold_467-1575043694:6210..7281 | TCONS_00067268-exon-scaffold_467-1575043694:6210..7281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_467 | supercontig | scaffold_467:4921..7281 + |
Blast
The following BLAST results are available for this feature:
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