TCONS_00067267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067267
Unique NameTCONS_00067267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067267 ID=TCONS_00067267|Name=TCONS_00067267|organism=Clytia hemisphaerica|type=transcript|length=1396bp
GTTTTGCAGTTTCAGTGTTTACATGGGATGCTGTATAATATCATCAATCC
TTAAAGTTACCTGAGAGTCAAAGACGGCTGTGCTTATCAACATAATTGAA
GAGAGATCTGCAATAGAAAGTGACAATCCAATAGGGAAGGGTGAGAGACG
AGAAGTACAAGGAACAATTTAGTGGCCAAGCACTTTGAGTCAGCAGTAAA
GAGAATTTTCATTCCCACGATGAAGATGGAGGTGGTGATGCCGAACAACC
AGTACAAGCACCAGGAGCCGATCAAGAAAGATATGACGAGCTCGTTGATA
AAGTAGCATCGCGTGTTCTTGACAAGATACGAAGTGAAAGCGATgacgaa
aatgaagatgaagaggAACAcgattttaagaacattgaagAAACAAAAAG
CGATCCTATATGGGGAagtggaagaagaagaagaagacgcATATTTTTCC
GAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGCGATGAGCTACCGAAG
AAGAATGACGACGAAGAAGCAAATGAAGATGAAGAGGAACACGATTTGAA
GAACATTGAAGAAACAAAAAACGATCCCAAAGCAtggagaaggagaagaa
gaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGTTAATAAATGAAACTG
TTATATGAATACAGTTGGTGCTCTCTAATTCCACGTTCTACttttcgata
ggctcccttattcgatggaatttaaagtccccgtcaacaagaaactctca
taaatgacGCTCCCTTTTTCGATAAGCTCTCTTATTCGAAGAAagtccaa
ttccccttgaagatcgaattagagagcgccaaCTGTAATTACAATTTTGC
ACTCTTATTAGTAatattatataatattttataattttacgGACTTATTT
ACTTCATTTATAACACACGGGAAAATGGTTAAATTTAGTTACTTGACGCC
GATTCTTTACCTGATAGACCGAATCCGATTCCGTGATTCGAAACAAATAT
CGCCTATATGATTTGTAACGTCCATTATGAATATAATATTAATCTTTAAT
TAactaaatcgaaatatgaatcgTTCCATTTTCATTAGATAACGTTATAT
TTCATTTGTAATGTCTACCAGCAacaatacattttttttaattgtccaCC
CTACTAGGTTTgtgaggtgacgggtatgtcccagacaaaaatcgaaaatc
gacccttagagaaagGGAAAATTGGCGTTTatgggacccttagagagact
tttctcaaattttttatcgattttcactCAATTTTTGTCCACATTTTGGA
AAATCACGACCCTTAGGGAGAGGAAATTTTTAATATCGTTATTTTTTGGA
CCCTTACACAgactaaattttctttttaatggtttttgtacccctt
Run BLAST on NCBI

transcript from alignment at scaffold_467:623..7281+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067267 ID=TCONS_00067267|Name=TCONS_00067267|organism=Clytia hemisphaerica|type=transcript|length=6659bp|location=Sequence derived from alignment at scaffold_467:623..7281+ (Clytia hemisphaerica)
GTTTTGCAGTTTCAGTGTTTACATGGGATGCTGTATAATATCATCAATCC
TTAAAGTTACCTGAGAGTCAAAGGTAAGCAAGGCGTTGCTTTAtataatt
aaaatttccaggtgCCANagaactttaatcgttcgatggagttcgattag
ttcgattgttcgattggttcgacaagttcgattgatcgggtctggtataA
ACCCTGGAGACAGTTACTTTCAAGATTGTTGAAGCCGGTCTTTTAAAAAG
TTTCccttaggcggcaatcacaaatatcttcatttcgcgtcctcgttggg
tctaaaaagtgagtcagtcggtcggtcggtcttaaaaattttcgggttta
cATAACGtcccaaaatggcgcatgtataatgataaaaaaagtcaaaatgc
tgcgaatgcgctagaagtCGCTCGCAAGAAAAAATCGgcattaataaaat
ttttgaacgaaggaaacgtcattgacagaaaaagtccgacaaatttaccg
actcaccgactcaattctactcaattttcgagagtctgTCGGGCGAcacg
aaacgaagatatttgtgattgccgccttctTAGATTATAAATGCTGTAGC
AACAAAGAGCTAGACCAATCTTCTCTGCGCTCCTTCGACTGTTCGAAATT
TCTTAAGGCTGAGGGAATTTGAATATGAGAGTTCAGCGTCGGCTGCCCGT
ATGTCAAAAAAACAACCGccttaaaatttcattatttcaaaaaaaatcat
cattatGGACGCagtcacaaataacttgtgttcacGTCATTTCCAGCCCT
AAAAAGTGAGTCATCGGTTGGTCGGCACTAAAATCGTCGGAAAAATAAGG
TCTGAAAACATAGGCTTTGTCATAGAGTTACTTTATTCATTAAAACCTTA
CACCAACCAGAACCTCAGCAATtgtatgaaaagtgaattttcactgTGTT
TATATACTGCGAGCGATGTAAATTNTCACTAACCAGAACCTCAGCAATtg
tatgaaaagtgaattttcactgTGTTTATATACTGCGAGCGATGTAAATT
TCCTGTTTTCGTACTACAATCCGATAAAGCTAACCACAGAGTCCTGATAT
TGCCCAATTTTTTGTTCTgtggatttttgtaaacaacAATTGGGCCATTT
TAGATTTTGGTCCACAAATGCTAGAGGTAATTAGTCAAACAATTATCAAA
TTAAACCAACCTAATTGTGAATTGAGCGATTTGAATTTAATTAATCAAAC
GCAATTCAAAACACACCAGTGCACTGGCAACTGGCGGGGCAGTGGTGCAC
ATGCTGCTTACAAAGATTGATAAAGTTTCAGTCGGTGTAAAAGAAATTAT
TCATGTCAGCGTCAATTACTGCAAAAGTAATGGTAAATTTTTATAATTGT
TGATCTTTAACAAGAATTTCATTTCCTTTTAGACGGCTGTGCTTATCAAC
ATAATTGAAGAGAGATCTGCAATAGAAAGTGACAATCCAATAGGTAAGAC
Tttaaaaatacatatttttaagagacttatttttcaattataaaattcct
tttttCAGACCCACTTTTGAAGtgattttttgccaattttataGCTTGTA
AGAAAACTGCTTCTggccatttttttaaatagaaaataataaaaatcctG
GCTAAAAGAAAGGATAAATCAACAAAACGCAAAAGTTTGTTCTcgcaaaa
tattttggaaaggTTCAATTCGCGAAAGCTAATTTTTGCAAAATGGGTAC
CCAAAATAGGACCGATTTCTTTTGGTAACTTGGGAACGAACTCAAAGAAA
TGAATAAACGTTcctcctaaaaataaaaaaatttaataaacaccccatat
gtttattcgaagtaatacggtatattTTCTTTTAAGACAACCTTTTCACA
ttgatttaaagattttaaaatcgccataaaaaatcaatgaagaagaaaac
gaagactGTTTCAAACATGGGTATTTCATCAATctgattttcaatatttt
tcaggtTTCGAGGGCCTTTCCGaaacttttttgaagaaatttccagaaat
tctttaaatttttggaagattgtgtCTTGAAGCTGCTTGAAAACAGATTG
GTGTAATATGGTAAAGggcttttagttaaaatttgcaatatagatttttt
tatttatctatCCAGGGAAGGGTGAGAGACGAGAAGTACAAGGAACAATT
TAGTGGCCAAGCACTTTGAGGTAATCTATATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAATAAAAAAAAGTACTGATTGATATCTGCAGGAATGATGGAGAGATG
CGAGATGCCCGACGATACTGAAAGAGAGCTGGGCCTTAATGCCGACAGGC
TGCTTGTTTGttgtttaaagggacataacagtaattttgcgaaatttgta
aacaaactgtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaa
aataaaaaatcaaagaccaaatatggctaattttgcttgttcaattgttt
tacaagtttgttttggacacatgattttaattgttctctttaaacTATTA
ACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCTggtaaattgactttgatttcatccccattccacaattcaatgtt
taaaaattgcactccaaacccatccccactggattttttaatcttAGAAC
AATAGATTTTATATCCTCATTCGGATTTTACtaggagtttttatccccac
tgaggaaaaaagctccaccggggggctgcgagacaggggtgtaccagtat
tctgggggtatttttgggtattttcaaaGGCTAAAGAAAATTGCTAAACT
CAATACTCTCTTTTcccttacacgtttttttttttataaggaacacgttt
ataaggaactcgaggctgaaaatcgttcaaaaaataaggaatagttaagg
aactgctcaggctgagaataagtggatttgaaaataatgtaccttattgg
gactaatttgaccaaattttgatNaaataaggaattgttaaggaactgct
cagcctgagaataagtggatttgaaaataatgtaccttattgggaccaat
ttggccaaattttgatctttcaaggggcaaaaagttcaaaatttcctatg
tagtaaggaactcgataaggaactttgagactgaaattctctgtagaAAT
AAGGAAcgccaggctcagagcaaagttaaggttccttataaaaaaaaaac
gtgTATCTCTTATCCCTTGAAAAATGGTTTGATTCGACCAGATGATCACT
ATATTACACAAATGCAATTCAATTAATCGAGAAGGTAATTACTAATTAAA
CAAGCTCAAAAGAAAACTCACGCAAATTGATAATTACTGAATTGGAAAAT
TCTTCCGCTTTGTGTCAAGCACATTCAAATGACATCCAAATAACGTCCGA
TTGGAATGACGGCTTTAATTATGTTTACCATTTATCTGATGCCGGCCTAA
TCTTTAGAAAccgaatatcaataattatctTCCTCTTTAGTCAAAGGAAG
gaacacttttttgaaaatttcctacGAAGGAGTGTTGAAAGAGATTGAAA
CAATCCAAATACGGGCATGAGTGTCCTCTGCTGGATATGAAATTACTGAA
TCGAGCGTGATAATGAATCAATTAATTACCTCAAATGTTCCAGTATAAAT
AACCATACCCTACGGatgaaacaaacaaacaaataaacaaacatCAAAGA
TGAAGACACTTCAAGTATTTTTGATTCTCAGCATAGCTACGGCCTATATG
GGTAAGAATGACAGCTTAATCTTCTACAAATTATaggaaacaaaattgaa
aaatcttctgtaTGACCATCAAACCAACAAAAAGCTCTATATCTAAAAAG
AAATTCTCGACTACAATTGGAGAAAGAATTTTATGATAACAATAGGTTTG
ACAATCtttcaaaatacaaaacaaaactaaaacatTTCATTATCATTCAA
CCTCTCACCGTGAAAAATACGAGTAAAATAATACACAACTTAAATTCCCc
tctttttgaccttttttgtcACTCTTATTTTTCTAGTCAGCAGTAAAGAG
AATTTTCATTCCCACGATGAAGATGGAGGTGGTGATGCCGAACAACCAGT
ACAAGCACCAGGAGCCGATCAAGAAAGATATGACGAGCTCGTTGATAAAG
TAGCATCGCGTGTTCTTGACAGTAAgtgttttttatatttgttttgttta
caacATGTTTGGAAAAAAGGGTAATATGATTTTGCTGCGAAGGCGCTTTG
TTGTTATACAAGTTGCACGACATCTACCTGATGAGGTACTCTCTGATTCT
TTGGCAAAGAATAACATAAGGAAAGGTTTAATCATTTAATCCGATTTTTA
TAGTACAAGGCAAGGCTAGTAAGCATGATTTATCTGTAGTANTTATACAA
GTTGCACGACATCTACCTGATGAGGTACTCTCTGATTCTTTGGCAAAGAA
TAACATAAGGAAAGGTTTAATCATTTAATCCGATTTTTATAGTACAAGGC
AAGGCTAGTAAGCACGATTTATCTGTAGTATGTGATACTAGTAAATTAAG
ACACGAAGTACGGttgacgttctctaattcgatcttcaagggtaattaga
ttttcatcggaTAAGGGCGGAGcgttgtttatgagagtttcttgtaaaca
gtgactttaaatatttttgagtaaGGGAGCTTTTcgaataaaacatcaaa
ttagagagcgtcaactgtatgtgtTTATGAACCATGCAAGTAATTAATAT
ACATGTATCCTAATTCTTACTTTCTTTTGTAAAATAGAGATACGAAGTGA
AAGCGATgacgaaaatgaagatgaagaggAACAcgattttaagaacattg
aagAAACAAAAAGCGATCCTATATGGGGAagtggaagaagaagaagaaga
cgcATATTTTTCCGAAGGGTAGCCGGAATTTATCCCGGAAAACGCCGCGA
TGAGCTACCGAAGAAGAATGACGACGAAGAAGCAAATGAAGATGAAGAGG
AACACGATTTGAAGAACATTGAAGAAACAAAAAACGATCCCAAAGCAtgg
agaaggagaagaagaCGCAGATTTTTGCGCCGATTCCGATTCCGTGGTTA
ATAAATGAAACTGTTATATGAATACAGTTGGTGCTCTCTAATTCCACGTT
CTACttttcgataggctcccttattcgatggaatttaaagtccccgtcaa
caagaaactctcataaatgacGCTCCCTTTTTCGATAAGCTCTCTTATTC
GAAGAAagtccaattccccttgaagatcgaattagagagcgccaaCTGTA
ATTACAATTTTGCACTCTTATTAGTAatattatataatattttataattt
tacgGACTTATTTACTTCATTTATAACACACGGGAAAATGGTTAAATTTA
GTTACTTGACGCCGATTCTTTACCTGATAGACCGAATCCGATTCCGTGAT
TCGAAACAAATATCGCCTATATGATTTGTAACGTCCATTATGAATATAAT
ATTAATCTTTAATTAactaaatcgaaatatgaatcgTTCCATTTTCATTA
GATAACGTTATATTTCATTTGTAATGTCTACCAGCAacaatacatttttt
ttaattgtccaCCCTACTAGGTTTgtgaggtgacgggtatgtcccagaca
aaaatcgaaaatcgacccttagagaaagGGAAAATTGGCGTTTatgggac
ccttagagagacttttctcaaattttttatcgattttcactCAATTTTTG
TCCACATTTTGGAAAATCACGACCCTTAGGGAGAGGAAATTTTTAATATC
GTTATTTTTTGGACCCTTACACAgactaaattttctttttaatggttttt
gtacccctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042026XLOC_042026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067267-exon-scaffold_467-1491911889:623..695TCONS_00067267-exon-scaffold_467-1491911889:623..695Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1510915933:623..695TCONS_00067267-exon-scaffold_467-1510915933:623..695Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1575043694:623..695TCONS_00067267-exon-scaffold_467-1575043694:623..695Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1491911889:2055..2115TCONS_00067267-exon-scaffold_467-1491911889:2055..2115Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1510915933:2055..2115TCONS_00067267-exon-scaffold_467-1510915933:2055..2115Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1575043694:2055..2115TCONS_00067267-exon-scaffold_467-1575043694:2055..2115Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1491911889:2788..2842TCONS_00067267-exon-scaffold_467-1491911889:2788..2842Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1510915933:2788..2842TCONS_00067267-exon-scaffold_467-1510915933:2788..2842Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1575043694:2788..2842TCONS_00067267-exon-scaffold_467-1575043694:2788..2842Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1491911889:5459..5593TCONS_00067267-exon-scaffold_467-1491911889:5459..5593Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1510915933:5459..5593TCONS_00067267-exon-scaffold_467-1510915933:5459..5593Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1575043694:5459..5593TCONS_00067267-exon-scaffold_467-1575043694:5459..5593Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1491911889:6210..7281TCONS_00067267-exon-scaffold_467-1491911889:6210..7281Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1510915933:6210..7281TCONS_00067267-exon-scaffold_467-1510915933:6210..7281Clytia hemisphaericaexon
TCONS_00067267-exon-scaffold_467-1575043694:6210..7281TCONS_00067267-exon-scaffold_467-1575043694:6210..7281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_467supercontigscaffold_467:623..7281 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.602158	0.0844508	0.360725	0.43609	6.15502e-08	0.382208	1.87807	0.00024778	4.07073	1.64761	0.560731	3.1561	1.1325	2.87214	0.181002	0.17784	1.34373	1.22139	0.979118	1.04793	0.905434	0.495686	0.261907	0.432208	0.278618	0.251695	0.533706	0.586048	0.216823	0.15831
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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