TCONS_00067263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067263
Unique NameTCONS_00067263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067263 ID=TCONS_00067263|Name=TCONS_00067263|organism=Clytia hemisphaerica|type=transcript|length=843bp
ttcccccccccccctcgaatGTAATCGAATCTGAATCGAACTGGAAATAT
GGTCGAAATTCGATTGCAGATTCGATTATCCTTTCGGGCTCATGCGAAGT
TAATTCGTTTTCTTCTGTTTGACTCGATTAAAATTATCTGGAATTTTATC
TTAGCAAAAGGGTAATTTTCTCATTTAAGCTGTAAATCTTGCGACCGCAA
TCGAATGTAATATGAAAGACTACTCCACCCTTGATCTCTCTTTAGTTGCG
GGCATCAAGTATAATACACAGGCTGCAAAATTGTATAtcagtgcagtcaa
aacatgtgattactcgaaaaagttcatgtgattttattcccatgttattT
GCTTtgcaacttacagctgataaatttaattagtgtcaataaattcgaac
caatcagaaataaatatcatgtaacaagcacatagaAATTTCGAGTGAAA
GcatgatttgtcttcagactttaattttgcaacctgtgtattttGGGAAT
GTTTAGTATGAACAGGCCAAGGGACCCAATGACCTTGACAATGCTCTATC
TTTACACAACAGCATTTTTTCTTATTGAATTTTACCTCTAATTACAATTA
CGATATAACAATTAAATTAATTAAAGTTCCCCATTCGAGtgatttatttt
atcaaaataataattttttgtttcaaaataattttttaattgtatTGATT
TATAATGGCATcaaattataatctattattttttaaactaaatttttatt
aaattttgattttattgtctatttttttattcttttatgaCTATTcatat
ttttacttatttttcttattaaaaaatcaaaacaaagactgCA
Run BLAST on NCBI

transcript from alignment at scaffold_466:448687..449529

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067263 ID=TCONS_00067263|Name=TCONS_00067263|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at scaffold_466:448687..449529 (Clytia hemisphaerica)
TGcagtctttgttttgattttttaataagaaaaataagtaaaaatatgAA
TAGtcataaaagaataaaaaaatagacaataaaatcaaaatttaataaaa
atttagtttaaaaaataatagattataatttgATGCCATTATAAATCAat
acaattaaaaaattattttgaaacaaaaaattattattttgataaaataa
atcaCTCGAATGGGGAACTTTAATTAATTTAATTGTTATATCGTAATTGT
AATTAGAGGTAAAATTCAATAAGAAAAAATGCTGTTGTGTAAAGATAGAG
CATTGTCAAGGTCATTGGGTCCCTTGGCCTGTTCATACTAAACATTCCCa
aaatacacaggttgcaaaattaaagtctgaagacaaatcatgCTTTCACT
CGAAATTtctatgtgcttgttacatgatatttatttctgattggttcgaa
tttattgacactaattaaatttatcagctgtaagttgcaAAGCAaataac
atgggaataaaatcacatgaactttttcgagtaatcacatgttttgactg
cactgaTATACAATTTTGCAGCCTGTGTATTATACTTGATGCCCGCAACT
AAAGAGAGATCAAGGGTGGAGTAGTCTTTCATATTACATTCGATTGCGGT
CGCAAGATTTACAGCTTAAATGAGAAAATTACCCTTTTGCTAAGATAAAA
TTCCAGATAATTTTAATCGAGTCAAACAGAAGAAAACGAATTAACTTCGC
ATGAGCCCGAAAGGATAATCGAATCTGCAATCGAATTTCGACCATATTTC
CAGTTCGATTCAGATTCGATTACattcgaggggggggggggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042022XLOC_042022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067263-exon-scaffold_466-1491911889:448687..449529TCONS_00067263-exon-scaffold_466-1491911889:448687..449529Clytia hemisphaericaexon
TCONS_00067263-exon-scaffold_466-1510915933:448687..449529TCONS_00067263-exon-scaffold_466-1510915933:448687..449529Clytia hemisphaericaexon
TCONS_00067263-exon-scaffold_466-1575043694:448687..449529TCONS_00067263-exon-scaffold_466-1575043694:448687..449529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:448687..449529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (6.49451 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.281341	0.30604	0.711851	0.265301	5.08908	4.22715	6.49451	6.23353	3.05387	3.29005	3.98332	1.67037	0.419808	0.553977	0.485721	0.695132	0.382154	0.564602	0	0.312105	0.671758	0.814344	0.519415	0.527759	0.181178	0.327948	1.41743	0.411813	1.19607	0.6709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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