Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067260 ID=TCONS_00067260|Name=TCONS_00067260|organism=Clytia hemisphaerica|type=transcript|length=2792bp
TCTTGACCTTCTCTGGAATGCCATGAGTTGCCAAAATTCGGTCGAAATGA
GGTACCACCGTGTCGGCGGCGGTAGAATCTAGCACAGCCACTTCTGGAAA
ACGAGAGTACTCGTCAATGAGAAGCAGGAAATAGTAATCTTTGGCGATTG
GGCCCTTGAAGTCTCAGGCAATGTGTCTCCAAGGTCCTTCTGGCAATTTC
GTCGTGATGAGCGGCTGATGCTTTTGTTGAGGTGTAGCGGCTAAGCATGC
ATGACAANAATTTTATATACATTAATGACTTTGACTTTGACTTTGTAGTC
ATCAAGATAACGTGGCGCTTTTCGTCGTCTTTTCAGTCCTGAATTTTTAC
GGTCAACGTCTTCCATCTCACTCTCTCCTTCTCGATACGGAATCGTGTCA
CTTTCGCTCCCCGAAGATGTGTCGTCAACGGGGCTGTCGTCGGGCAAAGG
TGGATTAATTTTCATAATTAAGTTTTCATAGCGACGATGACGAAACGGAA
AATCATCATCCAAGTGTTGGTGAGCGTCTGAAAAACGGATTGCGCTCATG
GACTTTCTTGAACTTTGCTGCACGGGTAACAAATTTGCCTTTCGATGTTT
CGGCGGTGAGCATATAACCTTTCTTTTTCCCCACAGTCAATGGTGATGGG
TCGAAAGGAGTCTTAACGGTAGACTTCTTTTGAGGGCGAAGGACTTTGTC
CCCTAGGTCGATGTCAATGGGCTTCCCGTGTCGTCGTTGGTCATGGCATT
TGGCCATGGCGGCCTTGTAACTTGTATCTTTCTCGAGAACGGATCGATCT
TGTTCCTTCTTTTTCATCATTGGAACAGAGGTTGCAATTTGTCGATTGNA
CGGCTGTAAGTCGTTTGCATTCTTCGGAATGTATCCTTTCTCAAGGatgc
aaaatttcaagcgtGCGAGCTGGTCATCGGCGTTTGTTGCTTTTCGAACC
ATGTCGAAGGTCATAGCGTCGGGAATATCGTCGTCAATGATAGCATTGAT
GTGGAAGGTTTCCTCACTGGCTTGCATCTTCTGTTGTTCAGTGATGGGCA
ATGGATGTCGACTGTTGTAATCTGTCGGNGTTCGACATAGGCGGTGTGGG
CTACCTTCTGAAGCATCTTCATGAAGTTTTCGGCCAGCCCATTCGACGAA
GGTTGTTCTGGTGTAATCGGCTGGTGTTTAGAACCTCGCTTCTTTGCGTA
ATTTGTAAAGTCGTGCAAGTTAAAAGGCGGACCATTGTCCGTCTTGACCT
TCTCTGGAATGCCATGAGTTGCCAAAATTCGGTCGAAATGAGGTACCACC
GTGTCGGCGNTGGTGATTCTCGATGCGAGCTGGGGCTTGTCTTCGTTGAT
TATTGTACAATGAGACCAGCGGCTCATGATCAGTTATTGTGGCAAATTTC
ATTCCGTGGAGATACATTCGGTTGGTCGTGACGCCGAAAAGGATAGCTAA
GCTTTCACCCTCGATCGGAGCATAGCGTTGTTCTGTCTCTGTTAGCGATC
TACTCGAGTAGTTGATTGTTTTGTAATGTCCAGTGTCGGGTTCCTTTTGA
AACACTGTGGCGCCAATACCCTTCGGTCCTCGGTCAACTACAAGCTTCGT
CTTTCGATTGGGTGCCCAGGGTGCTATTACTCGGTTGCTACATAAACCCT
CTTTCAGTTTGTCGAATGCGTCCTGACAAGCTTGATCCCAGTGGAATGGA
ACTTTCTTATGCGTTAGATTTCTTAACGGTGCTGTAATGTCACTGTAAGT
CTCTGGCTCTCCGAACATAAAGAGGGCGTTATATTGACACATCTGCAAGA
AACTTTTTACTTCCGCTGCGTTGGTTGGTGGTGCGAGTCTGACGATAGTC
TCTACTTTCGATGGATCTGCAGATATACCTTCGCTGGAAAACTTATACCC
AAACCAAATAACTTCTGGAGCACTCCATACACATTTCTCTCGTCTAAGTG
TTAAGCCGAGGGATTGTAATCGATCAAGAAGAGCACTCAAATGGAGGTCA
TGCTCATGCTGGGTCTCTCCGTAAACTAGCAAATCGTCTTCAATCTGTTC
CACACCAACGAGGTCTACAATACTTTGCCGCAAACGCTCGTGGAACTCTT
GACTGGCAGGTCCAGCACCCATGACAAGACGCTTAAATCAGTATATGCCT
TCGTGCGTGTAAAAGTTTGTAAGTTCTTTCGATTTCTCACCAAGTGGCAT
TTGGTGAAATGAATGTTTCATGTCCAGCTTTGTGAATACTTTGGCGCCGT
TAAGCTTGTGACGCAAGGAATGGACAGTCGGTACGGGAATATGGCTTTCT
TTGATGGCAATATTTGCGTGACGCATGTCTAAATTCATGTGTATCTGCCC
GGAGCCGGATGGTTTCTTTGTAATGACAACGTTCGAGATCCAGTCGAGGT
TAACACTTGGGTCTACGGGCCTTCGATGATGTCATTGTCTCTAAGTTCTT
TGAGATGGCTCGTGACTTGTTTTCTGAAAGCGAACGGTATAGGCCGCTCC
TTCTGTATCATTGGTTTGATCGATCCGTCTATATCAAAGTTTATCTATCA
TCAAAGTTACTGGCGTTTCCGGATCATTGGCGTCTCTGCGGCCTTCTGGG
TGAATCTCCAAGACACCGAGCTCTAACGATGCTTCTAAACCTAAGAGCGG
CTCCGTGTGGTTTCCTTCTATCACGTAAACGAGTTGCTCGGCTGTTGCTC
CACTGCTAGTGGTCAGTTCGATCTTTGCCCTACCCTTCACTCGCAGCAGG
TCTTTAGTACCATACGGGCGGAGCTTCACTTTCGATTTATAC Run BLAST on NCBI protein sequence of TCONS_00067260-protein >TCONS_00067260-protein ID=TCONS_00067260-protein|Name=TCONS_00067260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MGAGPASQEFHERLRQSIVDLVGVEQIEDDLLVYGETQHEHDLHLSALLD
RLQSLGLTLRREKCVWSAPEVIWFGYKFSSEGISADPSKVETIVRLAPPT
NAAEVKSFLQMCQYNALFMFGEPETYSDITAPLRNLTHKKVPFHWDQACQ
DAFDKLKEGLCSNRVIAPWAPNRKTKLVVDRGPKGIGATVFQKEPDTGHY
KTINYSSRSLTETEQRYAPIEGESLAILFGVTTNRMYLHGMKFATITDHE
PLVSLYNNQRRQAPARIENHXRRHGGTSFRPNFGNSWHSREGQDGQWSAF Run BLAST on NCBI transcript from alignment at scaffold_466:340838..343629 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067260 ID=TCONS_00067260|Name=TCONS_00067260|organism=Clytia hemisphaerica|type=transcript|length=2792bp|location=Sequence derived from alignment at scaffold_466:340838..343629 (Clytia hemisphaerica)
GTATAAATCGAAAGTGAAGCTCCGCCCGTATGGTACTAAAGACCTGCTGC
GAGTGAAGGGTAGGGCAAAGATCGAACTGACCACTAGCAGTGGAGCAACA
GCCGAGCAACTCGTTTACGTGATAGAAGGAAACCACACGGAGCCGCTCTT
AGGTTTAGAAGCATCGTTAGAGCTCGGTGTCTTGGAGATTCACCCAGAAG
GCCGCAGAGACGCCAATGATCCGGAAACGCCAGTAACTTTGATGATAGAT
AAACTTTGATATAGACGGATCGATCAAACCAATGATACAGAAGGAGCGGC
CTATACCGTTCGCTTTCAGAAAACAAGTCACGAGCCATCTCAAAGAACTT
AGAGACAATGACATCATCGAAGGCCCGTAGACCCAAGTGTTAACCTCGAC
TGGATCTCGAACGTTGTCATTACAAAGAAACCATCCGGCTCCGGGCAGAT
ACACATGAATTTAGACATGCGTCACGCAAATATTGCCATCAAAGAAAGCC
ATATTCCCGTACCGACTGTCCATTCCTTGCGTCACAAGCTTAACGGCGCC
AAAGTATTCACAAAGCTGGACATGAAACATTCATTTCACCAAATGCCACT
TGGTGAGAAATCGAAAGAACTTACAAACTTTTACACGCACGAAGGCATAT
ACTGATTTAAGCGTCTTGTCATGGGTGCTGGACCTGCCAGTCAAGAGTTC
CACGAGCGTTTGCGGCAAAGTATTGTAGACCTCGTTGGTGTGGAACAGAT
TGAAGACGATTTGCTAGTTTACGGAGAGACCCAGCATGAGCATGACCTCC
ATTTGAGTGCTCTTCTTGATCGATTACAATCCCTCGGCTTAACACTTAGA
CGAGAGAAATGTGTATGGAGTGCTCCAGAAGTTATTTGGTTTGGGTATAA
GTTTTCCAGCGAAGGTATATCTGCAGATCCATCGAAAGTAGAGACTATCG
TCAGACTCGCACCACCAACCAACGCAGCGGAAGTAAAAAGTTTCTTGCAG
ATGTGTCAATATAACGCCCTCTTTATGTTCGGAGAGCCAGAGACTTACAG
TGACATTACAGCACCGTTAAGAAATCTAACGCATAAGAAAGTTCCATTCC
ACTGGGATCAAGCTTGTCAGGACGCATTCGACAAACTGAAAGAGGGTTTA
TGTAGCAACCGAGTAATAGCACCCTGGGCACCCAATCGAAAGACGAAGCT
TGTAGTTGACCGAGGACCGAAGGGTATTGGCGCCACAGTGTTTCAAAAGG
AACCCGACACTGGACATTACAAAACAATCAACTACTCGAGTAGATCGCTA
ACAGAGACAGAACAACGCTATGCTCCGATCGAGGGTGAAAGCTTAGCTAT
CCTTTTCGGCGTCACGACCAACCGAATGTATCTCCACGGAATGAAATTTG
CCACAATAACTGATCATGAGCCGCTGGTCTCATTGTACAATAATCAACGA
AGACAAGCCCCAGCTCGCATCGAGAATCACCANCGCCGACACGGTGGTAC
CTCATTTCGACCGAATTTTGGCAACTCATGGCATTCCAGAGAAGGTCAAG
ACGGACAATGGTCCGCCTTTTAACTTGCACGACTTTACAAATTACGCAAA
GAAGCGAGGTTCTAAACACCAGCCGATTACACCAGAACAACCTTCGTCGA
ATGGGCTGGCCGAAAACTTCATGAAGATGCTTCAGAAGGTAGCCCACACC
GCCTATGTCGAACNCCGACAGATTACAACAGTCGACATCCATTGCCCATC
ACTGAACAACAGAAGATGCAAGCCAGTGAGGAAACCTTCCACATCAATGC
TATCATTGACGACGATATTCCCGACGCTATGACCTTCGACATGGTTCGAA
AAGCAACAAACGCCGATGACCAGCTCGCacgcttgaaattttgcatCCTT
GAGAAAGGATACATTCCGAAGAATGCAAACGACTTACAGCCGTNCAATCG
ACAAATTGCAACCTCTGTTCCAATGATGAAAAAGAAGGAACAAGATCGAT
CCGTTCTCGAGAAAGATACAAGTTACAAGGCCGCCATGGCCAAATGCCAT
GACCAACGACGACACGGGAAGCCCATTGACATCGACCTAGGGGACAAAGT
CCTTCGCCCTCAAAAGAAGTCTACCGTTAAGACTCCTTTCGACCCATCAC
CATTGACTGTGGGGAAAAAGAAAGGTTATATGCTCACCGCCGAAACATCG
AAAGGCAAATTTGTTACCCGTGCAGCAAAGTTCAAGAAAGTCCATGAGCG
CAATCCGTTTTTCAGACGCTCACCAACACTTGGATGATGATTTTCCGTTT
CGTCATCGTCGCTATGAAAACTTAATTATGAAAATTAATCCACCTTTGCC
CGACGACAGCCCCGTTGACGACACATCTTCGGGGAGCGAAAGTGACACGA
TTCCGTATCGAGAAGGAGAGAGTGAGATGGAAGACGTTGACCGTAAAAAT
TCAGGACTGAAAAGACGACGAAAAGCGCCACGTTATCTTGATGACTACAA
AGTCAAAGTCAAAGTCATTAATGTATATAAAATTNTTGTCATGCATGCTT
AGCCGCTACACCTCAACAAAAGCATCAGCCGCTCATCACGACGAAATTGC
CAGAAGGACCTTGGAGACACATTGCCTGAGACTTCAAGGGCCCAATCGCC
AAAGATTACTATTTCCTGCTTCTCATTGACGAGTACTCTCGTTTTCCAGA
AGTGGCTGTGCTAGATTCTACCGCCGCCGACACGGTGGTACCTCATTTCG
ACCGAATTTTGGCAACTCATGGCATTCCAGAGAAGGTCAAGA Coding sequence (CDS) from alignment at scaffold_466:340838..343629 >TCONS_00067260 ID=TCONS_00067260|Name=TCONS_00067260|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_466:340838..343629 (Clytia hemisphaerica)
ATGGGTGCTGGACCTGCCAGTCAAGAGTTCCACGAGCGTTTGCGGCAAAG
TATTGTAGACCTCGTTGGTGTGGAACAGATTGAAGACGATTTGCTAGTTT
ACGGAGAGACCCAGCATGAGCATGACCTCCATTTGAGTGCTCTTCTTGAT
CGATTACAATCCCTCGGCTTAACACTTAGACGAGAGAAATGTGTATGGAG
TGCTCCAGAAGTTATTTGGTTTGGGTATAAGTTTTCCAGCGAAGGTATAT
CTGCAGATCCATCGAAAGTAGAGACTATCGTCAGACTCGCACCACCAACC
AACGCAGCGGAAGTAAAAAGTTTCTTGCAGATGTGTCAATATAACGCCCT
CTTTATGTTCGGAGAGCCAGAGACTTACAGTGACATTACAGCACCGTTAA
GAAATCTAACGCATAAGAAAGTTCCATTCCACTGGGATCAAGCTTGTCAG
GACGCATTCGACAAACTGAAAGAGGGTTTATGTAGCAACCGAGTAATAGC
ACCCTGGGCACCCAATCGAAAGACGAAGCTTGTAGTTGACCGAGGACCGA
AGGGTATTGGCGCCACAGTGTTTCAAAAGGAACCCGACACTGGACATTAC
AAAACAATCAACTACTCGAGTAGATCGCTAACAGAGACAGAACAACGCTA
TGCTCCGATCGAGGGTGAAAGCTTAGCTATCCTTTTCGGCGTCACGACCA
ACCGAATGTATCTCCACGGAATGAAATTTGCCACAATAACTGATCATGAG
CCGCTGGTCTCATTGTACAATAATCAACGAAGACAAGCCCCAGCTCGCAT
CGAGAATCACCANCGCCGACACGGTGGTACCTCATTTCGACCGAATTTTG
GCAACTCATGGCATTCCAGAGAAGGTCAAGACGGACAATGGTCCGCCTTT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067260-exon-scaffold_466-1491911889:340838..343629 | TCONS_00067260-exon-scaffold_466-1491911889:340838..343629 | Clytia hemisphaerica | exon |
| TCONS_00067260-exon-scaffold_466-1510915933:340838..343629 | TCONS_00067260-exon-scaffold_466-1510915933:340838..343629 | Clytia hemisphaerica | exon |
| TCONS_00067260-exon-scaffold_466-1575043694:340838..343629 | TCONS_00067260-exon-scaffold_466-1575043694:340838..343629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:340838..343629 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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