Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067255 ID=TCONS_00067255|Name=TCONS_00067255|organism=Clytia hemisphaerica|type=transcript|length=1247bp
ggcatttttaggcattcttatttaaattaatcaatcatttacaaatattt
tcaaaaatagatgATCATAAAGGCTCGATATATTTacacaaacaaaatat
ttaaccATAATTTATCTACAAACCATTAAAAAAGCTTTCTTAGCTCATAC
TTTAACAATACCGATACAAAATTGGCAACGCAGttaaaaatttgtgattt
tagtGAATATTGGTGTATTCTaagttcttttttctaaaaatgagcAAGTC
GTTAGCTTCAGAATTAGTTATATTGACAAAACTTTCAGTGAATGATCCAA
ATAGACCAATAATATTGAACCTTCAAAGTACGTGTACAAAAAGCTacgtc
aaaatttcaattttaggccaattttttttttgagtatctcaaattttaag
ttatctTGAGACATTTTCTTTCTTAATATAAAATATGAACACCAACCTAA
GTTTTACGTGGTTCACCCAGTAATTTTTAAGACGTTCAAAGTCCGTAAAG
ATTTTTCACTTCATCGATATTATGTCCGTTTTTCTCGATCGTCTCTAAAA
GTGATTTTAATTCTTCCTTGTCCTTCTTACcaagaaattttaaagtcaag
CTAAAGCGTTCGCACAGTGTGAAcactttaaaaatgtttataattTTAGG
TAAGGAGTCAATAGATAGATCGTTTTTGATAGATTTAACATATGTCTCTA
AGAAGTTAAACGGTATATCACATTTGAATACTGATCGAAGGAAGTCCATA
TCAAACGACAGGATATATTCTACTTTGTTTTCCACAGTAGACCAAGTTTT
TAGAAAATCATCACGAGTTTTGATTCCGTTTGTCTGCTCAGTGAGCGTCG
AAGTAGCAATGTTATTATGTTTCAGGTCTTTTTGATCAGTGTTGTAAGCG
GTATTCCAAGGTTGTTGGACGTTCTTCACTCCAGTAATATCATCCCGATC
AAGAGGTTGTAAGTGAGATGCTGTAACTATGTCTCGAAATTCTTCATAAC
TCGCTACTTTTTGGTGGACCGCACGAAACTTGGCGTCATTTTCACGCGAA
TATTTTTGATCAGCTTTCTTCGCGTTGtagaattctttttgtaatttatc
GAAATTGATACCTTCTTCTGCCATATTATTTatgttttcttatttatttg
ttttttagactaaggagaaaagaaaaatgtattAATTAAACGGTAATCAG
AAATGGTGAAGTAAATCAAACGAACAGATTAAATTCTTGATGATAAT Run BLAST on NCBI protein sequence of TCONS_00067255-protein >TCONS_00067255-protein ID=TCONS_00067255-protein|Name=TCONS_00067255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MAEEGINFDKLQKEFYNAKKADQKYSRENDAKFRAVHQKVASYEEFRDIV
TASHLQPLDRDDITGVKNVQQPWNTAYNTDQKDLKHNNIATSTLTEQTNG
IKTRDDFLKTWSTVENKVEYILSFDMDFLRSVFKCDIPFNFLETYVKSIK
NDLSIDSLPKIINIFKVFTLCERFSLTLKFLGKKDKEELKSLLETIEKNG
HNIDEVKNLYGL Run BLAST on NCBI transcript from alignment at scaffold_466:218176..219422 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067255 ID=TCONS_00067255|Name=TCONS_00067255|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at scaffold_466:218176..219422 (Clytia hemisphaerica)
ATTATCATCAAGAATTTAATCTGTTCGTTTGATTTACTTCACCATTTCTG
ATTACCGTTTAATTaatacatttttcttttctccttagtctaaaaaacaa
ataaataagaaaacatAAATAATATGGCAGAAGAAGGTATCAATTTCgat
aaattacaaaaagaattctaCAACGCGAAGAAAGCTGATCAAAAATATTC
GCGTGAAAATGACGCCAAGTTTCGTGCGGTCCACCAAAAAGTAGCGAGTT
ATGAAGAATTTCGAGACATAGTTACAGCATCTCACTTACAACCTCTTGAT
CGGGATGATATTACTGGAGTGAAGAACGTCCAACAACCTTGGAATACCGC
TTACAACACTGATCAAAAAGACCTGAAACATAATAACATTGCTACTTCGA
CGCTCACTGAGCAGACAAACGGAATCAAAACTCGTGATGATTTTCTAAAA
ACTTGGTCTACTGTGGAAAACAAAGTAGAATATATCCTGTCGTTTGATAT
GGACTTCCTTCGATCAGTATTCAAATGTGATATACCGTTTAACTTCTTAG
AGACATATGTTAAATCTATCAAAAACGATCTATCTATTGACTCCTTACCT
AAaattataaacatttttaaagtgTTCACACTGTGCGAACGCTTTAGctt
gactttaaaatttcttgGTAAGAAGGACAAGGAAGAATTAAAATCACTTT
TAGAGACGATCGAGAAAAACGGACATAATATCGATGAAGTGAAAAATCTT
TACGGACTTTGAACGTCTTAAAAATTACTGGGTGAACCACGTAAAACTTA
GGTTGGTGTTCATATTTTATATTAAGAAAGAAAATGTCTCAagataactt
aaaatttgagatactcaaaaaaaaaattggcctaaaattgaaattttgac
gtAGCTTTTTGTACACGTACTTTGAAGGTTCAATATTATTGGTCTATTTG
GATCATTCACTGAAAGTTTTGTCAATATAACTAATTCTGAAGCTAACGAC
TTgctcatttttagaaaaaagaacttAGAATACACCAATATTCactaaaa
tcacaaatttttaaCTGCGTTGCCAATTTTGTATCGGTATTGTTAAAGTA
TGAGCTAAGAAAGCTTTTTTAATGGTTTGTAGATAAATTATggttaaata
ttttgtttgtgtAAATATATCGAGCCTTTATGATcatctatttttgaaaa
tatttgtaaatgattgattaatttaaataagaatgcctaaaaatgcc Coding sequence (CDS) from alignment at scaffold_466:218176..219422 >TCONS_00067255 ID=TCONS_00067255|Name=TCONS_00067255|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_466:218176..219422 (Clytia hemisphaerica)
ATGGCAGAAGAAGGTATCAATTTCgataaattacaaaaagaattctaCAA
CGCGAAGAAAGCTGATCAAAAATATTCGCGTGAAAATGACGCCAAGTTTC
GTGCGGTCCACCAAAAAGTAGCGAGTTATGAAGAATTTCGAGACATAGTT
ACAGCATCTCACTTACAACCTCTTGATCGGGATGATATTACTGGAGTGAA
GAACGTCCAACAACCTTGGAATACCGCTTACAACACTGATCAAAAAGACC
TGAAACATAATAACATTGCTACTTCGACGCTCACTGAGCAGACAAACGGA
ATCAAAACTCGTGATGATTTTCTAAAAACTTGGTCTACTGTGGAAAACAA
AGTAGAATATATCCTGTCGTTTGATATGGACTTCCTTCGATCAGTATTCA
AATGTGATATACCGTTTAACTTCTTAGAGACATATGTTAAATCTATCAAA
AACGATCTATCTATTGACTCCTTACCTAAaattataaacatttttaaagt
gTTCACACTGTGCGAACGCTTTAGcttgactttaaaatttcttgGTAAGA
AGGACAAGGAAGAATTAAAATCACTTTTAGAGACGATCGAGAAAAACGGA
CATAATATCGATGAAGTGAAAAATCTTTACGGACTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067255-exon-scaffold_466-1491911889:218176..219422 | TCONS_00067255-exon-scaffold_466-1491911889:218176..219422 | Clytia hemisphaerica | exon |
| TCONS_00067255-exon-scaffold_466-1510915933:218176..219422 | TCONS_00067255-exon-scaffold_466-1510915933:218176..219422 | Clytia hemisphaerica | exon |
| TCONS_00067255-exon-scaffold_466-1575043694:218176..219422 | TCONS_00067255-exon-scaffold_466-1575043694:218176..219422 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:218176..219422 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067255 vs. Swiss-Prot (Human)
Match: CC103 (Coiled-coil domain-containing protein 103 OS=Homo sapiens GN=CCDC103 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.805e-24 Identity = 63/180 (35.00%), Postives = 89/180 (49.44%), Query Frame = -1 Query: 585 INFDKLQKEFYNAKKADQKYSRENDAKFRAVHQKVASYEEFRDIVTASHLQPLDRDDITGVKNVQQPWNTAYNTDQKDLKHNNIATSTLTEQTN-GIKTRDDFLKTW----STVENKVEYILSFDMDFLRSVFKCDIPFNFLETYVKSIKNDLSIDSLPKIINIFKVFTLCERFSLTLKF 1109
INF L+KE A AD+KY REN AK RAV Q+VASYEEFR IV ASHL+PL+R D G K PWN +T Q ++AT E+ +T DF + W + + + +L L +F+ D+ F L + ++ + + ++ I RF+L L
Sbjct: 7 INFKALEKELQAALTADEKYKRENAAKLRAVEQRVASYEEFRGIVLASHLKPLERKDKMGGKRT-VPWNC--HTIQGR-TFQDVATEISPEKAPLQPETSADFYRDWRRHLPSGPERYQALLQLGGPRLGCLFQTDVGFGLLGELLVALADHVGPADRAAVLGILCSLASTGRFTLNLSL 182
The following BLAST results are available for this feature:
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