TCONS_00067252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067252
Unique NameTCONS_00067252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067252 ID=TCONS_00067252|Name=TCONS_00067252|organism=Clytia hemisphaerica|type=transcript|length=448bp
GGAAGCTGGGACGTTACGGGGAGAAAGACTGTATATCATACAGCAGTTTG
TTGTACCAAATTGAAAGTGGCATTAAGAAGGGATATGGGGAGTCTGACAT
AATTAATGCTGTAATCAAAGCTGCGACACCAGATAATTATTTGAGGTCAT
ACCTTGAATCTCGGCCAACAATGAAGATTAATGATCTTTATATTGTACTG
CGGTCACATTTCCGGGAACAGGATGCCAGTTCTTTGTTCTCTGCGTTGGG
GtctgaaaaacaaaaagtagGGGAATCTGCTTACGAATTTGTTATGAGAC
TGATGGCCATGCGACAAAAAGTCAAGTCTGTGTCACACTCCCATTgccca
tcattggacattgatgaatttcacattgctacgtttcgagagattcttct
cccatcattggacattgatgaatttcacatggaaaaaaagctagCTAG
Run BLAST on NCBI

protein sequence of TCONS_00067252-protein

>TCONS_00067252-protein ID=TCONS_00067252-protein|Name=TCONS_00067252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
KLGRYGEKDCISYSSLLYQIESGIKKGYGESDIINAVIKAATPDNYLRSY
LESRPTMKINDLYIVLRSHFREQDASSLFSALGSEKQKVGESAYEFVMRL
MAMRQKVKSVSHSHCPSLDIDEFHIATFREILLPSLDIDEFHMEKKLA
Run BLAST on NCBI

transcript from alignment at scaffold_466:116526..116973

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067252 ID=TCONS_00067252|Name=TCONS_00067252|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_466:116526..116973 (Clytia hemisphaerica)
CTAGctagctttttttccatgtgaaattcatcaatgtccaatgatgggag
aagaatctctcgaaacgtagcaatgtgaaattcatcaatgtccaatgatg
ggcAATGGGAGTGTGACACAGACTTGACTTTTTGTCGCATGGCCATCAGT
CTCATAACAAATTCGTAAGCAGATTCCCctactttttgtttttcagaCCC
CAACGCAGAGAACAAAGAACTGGCATCCTGTTCCCGGAAATGTGACCGCA
GTACAATATAAAGATCATTAATCTTCATTGTTGGCCGAGATTCAAGGTAT
GACCTCAAATAATTATCTGGTGTCGCAGCTTTGATTACAGCATTAATTAT
GTCAGACTCCCCATATCCCTTCTTAATGCCACTTTCAATTTGGTACAACA
AACTGCTGTATGATATACAGTCTTTCTCCCCGTAACGTCCCAGCTTCC

Coding sequence (CDS) from alignment at scaffold_466:116526..116973

>TCONS_00067252 ID=TCONS_00067252|Name=TCONS_00067252|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_466:116526..116973 (Clytia hemisphaerica)
AGctagctttttttccatgtgaaattcatcaatgtccaatgatgggagaa
gaatctctcgaaacgtagcaatgtgaaattcatcaatgtccaatgatggg
cAATGGGAGTGTGACACAGACTTGACTTTTTGTCGCATGGCCATCAGTCT
CATAACAAATTCGTAAGCAGATTCCCctactttttgtttttcagaCCCCA
ACGCAGAGAACAAAGAACTGGCATCCTGTTCCCGGAAATGTGACCGCAGT
ACAATATAAAGATCATTAATCTTCATTGTTGGCCGAGATTCAAGGTATGA
CCTCAAATAATTATCTGGTGTCGCAGCTTTGATTACAGCATTAATTATGT
CAGACTCCCCATATCCCTTCTTAATGCCACTTTCAATTTGGTACAACAAA
CTGCTGTATGATATACAGTCTTTCTCCCCGTAACGTCCCAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042011XLOC_042011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067252-proteinTCONS_00067252-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067252-exon-scaffold_466-1491911889:116526..116973TCONS_00067252-exon-scaffold_466-1491911889:116526..116973Clytia hemisphaericaexon
TCONS_00067252-exon-scaffold_466-1510915933:116526..116973TCONS_00067252-exon-scaffold_466-1510915933:116526..116973Clytia hemisphaericaexon
TCONS_00067252-exon-scaffold_466-1575043694:116526..116973TCONS_00067252-exon-scaffold_466-1575043694:116526..116973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:116526..116973 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.58996	6.13863	5.12825	5.0837	29.7019	24.0889	9.73316	12.6379	7.25218	7.98774	15.3422	8.75626	8.70077	9.70205	6.60771	8.70509	6.7539	7.0181	20.5621	16.5175	13.3957	12.7873	9.21669	8.439	4.83303	9.51003	18.8095	19.5112	15.3865	13.9757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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