TCONS_00067230 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067230
Unique Name	TCONS_00067230
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1680

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_466:437754..440900-
coding sequence from alignment at scaffold_466:437754..440900-

transcript sequence

>TCONS_00067230 ID=TCONS_00067230|Name=TCONS_00067230|organism=Clytia hemisphaerica|type=transcript|length=1680bp
GTAAAATCGTCAATAATGAGAAGGAAATTATCCCCAGTGAAGATTTTCTT
GTTCAGCAAGGCCAGCACGACGCTCATCACGTTAACGACCAATTGGAAAT
CGCTGATCATCGCAAATTCGAGGAAAAATACAGGATTGAAGGATACCAGG
TACTAATTCAAAAACTCAGGGAAATGAAAGATAAGATTAGTAGAATCTCC
CGCCGACGTCGAACACGTGACGAAAATGAACGTATGAACGAGGAAGATTA
TAAACTTAACCAATTCTTCCAAACATCTGAAGAAGAATGGTATTCGAAAA
ATGTCTTTGAATATCAATATCGATCAACAATCGTAGAAGAAGACCCTGAC
GAAAATATGTGGTGCGAAGAATTATACCGTTTAGTGCACGGTTTTGAACT
CGATACTGACTCTATTGACTATGATTATGAGGAATCTGAAGTCGATGACC
ACGAATATGAAGTCGATGACGACGAATATGAAGTCGATGACGACGAATAT
GAGGAATTCGACGTCGATTCCGATGACGGTGAAGATGTCGGCGACTTGGA
TGATGACGAGGAGGATGACGATGAAGAAGAATTTCAACCATTTGGAATGG
GATCGTTCTTGATCGGGGATGACAAAGTGATCAAAATGGTCTTTGTCTTC
AACTTCTCCTTACTCTTATTCATCATCCAACCTCGAAAAGAGAAGAACGA
AAGCGAtaatatcttcattttcaaacaaaactcTTCTCCCTCGTGTCCCT
TGTTGCTCAGTAAGCCTACAGTGGGGTCCACGTTACTTCACACCAGCGTG
AGCACGGGACATGAAAACCTTGATAAAAAAGAGCCACATCGATAGTAATA
CCATTTCGAACGGTCGAAAAATACACAAGTTGAAATGAACGAATAGAAAG
CAGCAGAATATGACAATAAATGGGTCGACATGTATCATCAACAATAACAT
CGAATAAAACCATCCTTTTGAGATTCCGAGCAGCAGGCGAACTAAAATAA
ACGAGGTTTTGGGGGCTAAACTTCGTTCCTGTGACGGAGGAAAAAGATGA
ACTTGGCTGCAATGTTAATTGTAATACCTACGTTGTCATATCAATAGAAA
GATTTTCATCATGATACCTTCCTTTTGAGATTTCGAGCGGGTATCGGTAC
TAAATTAAGCTAAACGTGATTCAATCAATGTACTACATTATCATATCAAG
AGAGGATTaccagcaaaacttgttttttaaataacttcagTTTGGCTGAT
GGTAGAAAAAATTGGTCTAATTTGCACATCataaaaaggatcattttgca
aaaaaaaaattaaaaattttgttgttgtcAGGAGAAATCAGCAAAGTTTT
GTGCAAAAGTGCAAGAGACcagaaacataaaaatcaatagTTCATAAAAC
CCAGGTTAGATGACAGTTGATGTCTTCAATGACAGCGCTTGGACTGAATG
AGTTTATAACAATGCATCTTTCGCGTAATGTTTCAGACCATATCGAACCC
AGATTCCcaataaaattgatgaaattgTCATAGTAGGTACCATGATTTGT
CTGACCACGGTTAAACATTTGTGATTTGTTGTCTCGTTTAGTATAGAATT
TGAAGTGAAGTTGACGTCTCTCTTAGTTTGGGTGATCGAGGTAATATCAC
TTTCGGATCTTGTATCTCCACAAAAATGGG

Run BLAST on NCBI

protein sequence of TCONS_00067230-protein

>TCONS_00067230-protein ID=TCONS_00067230-protein|Name=TCONS_00067230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
KIVNNEKEIIPSEDFLVQQGQHDAHHVNDQLEIADHRKFEEKYRIEGYQV
LIQKLREMKDKISRISRRRRTRDENERMNEEDYKLNQFFQTSEEEWYSKN
VFEYQYRSTIVEEDPDENMWCEELYRLVHGFELDTDSIDYDYEESEVDDH
EYEVDDDEYEVDDDEYEEFDVDSDDGEDVGDLDDDEEDDDEEEFQPFGMG
SFLIGDDKVIKMVFVFNFSLLLFIIQPRKEKNESDNIFIFKQNSSPSCPL
LLSKPTVGSTLLHTSVSTGHENLDKKEPHR

Run BLAST on NCBI

transcript from alignment at scaffold_466:437754..440900-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067230 ID=TCONS_00067230|Name=TCONS_00067230|organism=Clytia hemisphaerica|type=transcript|length=3147bp|location=Sequence derived from alignment at scaffold_466:437754..440900- (Clytia hemisphaerica)
GTAAAATCGTCAATAATGAGAAGGAAATTATCCCCAGTGAAGATTTTCTT
GTTCAGCAAGGTATATTATTAATTTGAATCCTAGATTAGTGTTACTCAGG
AAGTCATTATTGAAAAATTAGTACGGCGGACTTAAAGGCCCCCTTCATAG
CTATGTATCTTCAGAGTGAATTTTATTTTATCAAAAAAACTTTGGTTCCA
CTCATGGATAAAATTCTTTGTTATGCAAAAGTTTTATTTTGACTAAATCT
ATACAATGAAACAATACACCGCTATTTTATAGGCCAGCACGNCGAAGCAT
TTTTATTACATTTCTTATCGAAAATCACTCATCCAATTCCCAAAAGAGAC
TTAAAACTGTCCTTTGAGAGTCAGATTCTTCCACCTTATTGATAATTATA
AGTCGTTATGACGTTTCAAGCTGTGAGAAAGATGCAAAAGACGTGTTGTG
TATAAGAAATTTAATGTTTACACCGGAAATTTTCAAACTTCAACCTCAAA
AAAACCACCTTGCCACCACGTGCCTCCAAAGGATTTTCATACCACAGTGG
AGCCAAGAGACTCAAGTCTTATTATTTATGTTAATTTCAGCTCTTCTGGA
GACAGTCTTGTAAAGATATTTCCAATTGAAAATTTTGTTACATTATAAGC
ATTTTGTCTGAATTTCTTGTCTAATGATGGTTTTCTCACATTAGATTTCA
CAAATGTATCCAGCTTGGTATGCTAGCCTTACTTTCAAACTTTTATTCTG
CAAATGTACAAAAAGAAAGAGCTAGAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGCAAAAGTTTTATTTTGACTAAATCTGTACA
ATGAAACAATACACCGCTATTTTATAGGCCAGCACGACGCTCATCACGTT
AACGACCAATTGGAAATCGCTGATCATCGCAAATTCGAGGAAAAATACAG
GATTGAAGGATACCAGGTACTAATTCAAAAACTCAGGGAAATGAAAGATA
AGATTAGTAGAATCTCCCGCCGACGTCGAACACGTGACGAAAATGAACGT
ATGAACGAGGAAGATTATAAACTTAACCAATTCTTCCAAACATCTGAAGA
AGAATGGTATTCGAAAAATGTCTTTGAATATCAATATCGATCAACAATCG
TAGAAGAAGACCCTGACGAAAATATGTGGTGCGAAGAATTATACCGTTTA
GTGCACGGTTTTGAACTCGATACTGACTCTATTGACTATGATTATGAGGA
ATCTGAAGTCGATGACCACGAATATGAAGTCGATGACGACGAATATGAAG
TCGATGACGACGAATATGAGGAATTCGACGTCGATTCCGATGACGGTGAA
GATGTCGGCGACTTGGATGATGACGAGGAGGATGACGATGAAGAAGAATT
TCAACCATTTGGAATGGGATCGTTCTTGATCGGGGATGACAAAGTGATCA
AAATGGTCTTTGTCTTCAACTTCTCCTTACTCTTATTCATCATCCAACCT
CGAAAAGAGAAGAACGAAAGCGATAATATCTTCATTTTCAAACAAAACTC
TTCTCCCTCGTGTCCCTTGTTGCTCAGTAAGCCTACAGTGGGGTCCACGT
TACTTCACACCAGCGTGAGCACGGGACATGAAAACCTTGATAAAAAAGAG
CCACATCGATAGTAATACCATTTCGAACGGTCGAAAAATACACAAGTTGA
AATGAACGAATAGAAAGCAGCAGAATATGACAATAAATGGGTCGACATGT
ATCATCAACAATAACATCGAATAAAACCATCCTTTTGAGATTCCGAGCAG
CAGGCGAACTAAAATAAACGAGGTTTTGGGGGCTAAACTTCGTTCCTGTG
ACGGAGGAAAAAGATGAACTTGGCTGCAATGTTAATTGTAATACCTACGT
TGTCATATCAATAGAAAGATTTTCATCATGATACCTTCCTTTTGAGATTT
CGAGCGGGTATCGGTACTAAATTAAGCTAAACGTGATTCAATCAATGTAC
TACATTATCATATCAAGAGAGGATTACCAGCAAAACTTGTTTTTTAAATA
ACTTCAGTTTGGCTGATGGTAGAAAAAATTGGTCTAATTTGCACATCATA
AAAAGGATCATTTTGCAAAAAAAAAATTAAAAATTTTGTTGTTGTCAGGA
GAAATCAGCAAAGTTTTGTGCAAAAGTGCAAGAGACCAGAAACATAAAAA
TCAATAGTTCATAAAACCCAGGTTAGATGACAGTTGATGTCTTCAATGAC
AGCGCTTGGACTGAATGAGTTTATAACAATGCATCTTTCGCGTAATGTTT
CAGACCATATCGAACCCAGATTCCCAATAAAATTGATGAAATTGTCATAG
TAGGTACCATGATTTGTCTGACCACGGTTAAACATTTGTGATTTGTTGTC
TCGTTTAGTATAGAATTTGAAGTGAAGTTGACGTCTCTCTTAGTTTGGGT
GATCGAGGTAATATCACTTTCGGATCTTGTATCTCCACAAAAATGGG

Coding sequence (CDS) from alignment at scaffold_466:437754..440900-

>TCONS_00067230 ID=TCONS_00067230|Name=TCONS_00067230|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at scaffold_466:437754..440900- (Clytia hemisphaerica)
GCCAGCACGACGCTCATCACGTTAACGACCAATTGGAAATCGCTGATCAT
CGCAAATTCGAGGAAAAATACAGGATTGAAGGATACCAGGTACTAATTCA
AAAACTCAGGGAAATGAAAGATAAGATTAGTAGAATCTCCCGCCGACGTC
GAACACGTGACGAAAATGAACGTATGAACGAGGAAGATTATAAACTTAAC
CAATTCTTCCAAACATCTGAAGAAGAATGGTATTCGAAAAATGTCTTTGA
ATATCAATATCGATCAACAATCGTAGAAGAAGACCCTGACGAAAATATGT
GGTGCGAAGAATTATACCGTTTAGTGCACGGTTTTGAACTCGATACTGAC
TCTATTGACTATGATTATGAGGAATCTGAAGTCGATGACCACGAATATGA
AGTCGATGACGACGAATATGAAGTCGATGACGACGAATATGAGGAATTCG
ACGTCGATTCCGATGACGGTGAAGATGTCGGCGACTTGGATGATGACGAG
GAGGATGACGATGAAGAAGAATTTCAACCATTTGGAATGGGATCGTTCTT
GATCGGGGATGACAAAGTGATCAAAATGGTCTTTGTCTTCAACTTCTCCT
TACTCTTATTCATCATCCAACCTCGAAAAGAGAAGAACGAAAGCGATAAT
ATCTTCATTTTCAAACAAAACTCTTCTCCCTCGTGTCCCTTGTTGCTCAG
TAAGCCTACAGTGGGGTCCACGTTACTTCACACCAGCGTGAGCACGGGAC
ATGAAAACCTTGATAAAAAAGAGCCACATCGATAGAAAATCGTCAATAAT
GAGAAGGAAATTATCCCCAGTGAAGATTTTCTTGTTCAGCAAGGCCAGCA
CGACGCTCATCACGTTAACGACCAATTGGAAATCGCTGATCATCGCAAAT
TCGAGGAAAAATACAGGATTGAAGGATACCAGGTACTAATTCAAAAACTC
AGGGAAATGAAAGATAAGATTAGTAGAATCTCCCGCCGACGTCGAACACG
TGACGAAAATGAACGTATGAACGAGGAAGATTATAAACTTAACCAATTCT
TCCAAACATCTGAAGAAGAATGGTATTCGAAAAATGTCTTTGAATATCAA
TATCGATCAACAATCGTAGAAGAAGACCCTGACGAAAATATGTGGTGCGA
AGAATTATACCGTTTAGTGCACGGTTTTGAACTCGATACTGACTCTATTG
ACTATGATTATGAGGAATCTGAAGTCGATGACCACGAATATGAAGTCGAT
GACGACGAATATGAAGTCGATGACGACGAATATGAGGAATTCGACGTCGA
TTCCGATGACGGTGAAGATGTCGGCGACTTGGATGATGACGAGGAGGATG
ACGATGAAGAAGAATTTCAACCATTTGGAATGGGATCGTTCTTGATCGGG
GATGACAAAGTGATCAAAATGGTCTTTGTCTTCAACTTCTCCTTACTCTT
ATTCATCATCCAACCTCGAAAAGAGAAGAACGAAAGCGATAATATCTTCA
TTTTCAAACAAAACTCTTCTCCCTCGTGTCCCTTGTTGCTCAGTAAGCCT
ACAGTGGGGTCCACGTTACTTCACACCAGCGTGAGCACGGGACATGAAAA
CCTTGATAAAAAAGAGCCACATCGATAGAAAATCGTCAATAATGAGAAGG
AAATTATCCCCAGTGAAGATTTTCTTGTTCAGCAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041998	XLOC_041998	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00067230-protein	TCONS_00067230-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00067230-exon-scaffold_466-1575043694:440841..440900	TCONS_00067230-exon-scaffold_466-1575043694:440841..440900	Clytia hemisphaerica	exon
TCONS_00067230-exon-scaffold_466-1575043694:437754..439373	TCONS_00067230-exon-scaffold_466-1575043694:437754..439373	Clytia hemisphaerica	exon
TCONS_00067230-exon-scaffold_466-1510915933:440841..440900	TCONS_00067230-exon-scaffold_466-1510915933:440841..440900	Clytia hemisphaerica	exon
TCONS_00067230-exon-scaffold_466-1510915933:437754..439373	TCONS_00067230-exon-scaffold_466-1510915933:437754..439373	Clytia hemisphaerica	exon
TCONS_00067230-exon-scaffold_466-1491911889:440841..440900	TCONS_00067230-exon-scaffold_466-1491911889:440841..440900	Clytia hemisphaerica	exon
TCONS_00067230-exon-scaffold_466-1491911889:437754..439373	TCONS_00067230-exon-scaffold_466-1491911889:437754..439373	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_466	supercontig	scaffold_466:437754..440900 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314086	0.441482	0.13137	0.130145	0	0	0.129552	0.0578641	0	0.164953	0	0.131089	0	0	0.0450496	0.0253595	0	0.0335657	0.0384435	0	0	0	0.243471	0.174248	0.0758462	0.0369868	0	0	0.0172694	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00067230 vs. Swiss-Prot (Human)

BLAST of TCONS_00067230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0

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POSITION

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Match Name	E-value	Identity	Description

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TCONS_00067230 (transcript) - C. hemisphaerica

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