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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067228 ID=TCONS_00067228|Name=TCONS_00067228|organism=Clytia hemisphaerica|type=transcript|length=4032bpRun BLAST on NCBI transcript from alignment at scaffold_466:325054..338486- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067228 ID=TCONS_00067228|Name=TCONS_00067228|organism=Clytia hemisphaerica|type=transcript|length=13433bp|location=Sequence derived from alignment at scaffold_466:325054..338486- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067228 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4) HSP 1 Score: 374.4 bits (960), Expect = 4.708e-114 Identity = 200/546 (36.63%), Postives = 310/546 (56.78%), Query Frame = 2
Query: 2225 HFEENHLRDVLKRVDELRQAGQLGFCDVILRVSSQEFHAHKLILASCSDYFYAMFNGNMKESKERIVDINGVDVEVMKLVLNFIYTGGIPLSNDNVEDILQAANLMLIKSLKDVCCRFLETLLTVNNCLGMQKFAESYSCEGLFESTTNFICDNFGYITESDEFLQLQAVQLVPIISSDELRVLNEEKVYEALIRWTKYSLSERKKYFPELVQHIRLPMLPPDYLVDQVESESLFVEFPKCKELLVEAHHYLLLPNRRGVMAQTARTRPRKYENNNEILIACGGNGESSMNTTIFSYNMAKSSWNELPRLIPERGYHGLATIDGEMYLVGGITTSRAEGREGQTELLDTVKKFDTEQNAW-VNLAALHVKRSKMSVIACSGLIFVVGGFDGSQTLNSVECYNPVNNRWKFVAPMLTHRRCTTSVSNGNFVFIIGGHDGAQILNTIETYDVERDQWSVSDIAPMSDRRSFPCAVTINDDIYVMGGYDGHDTLRTCEIYNMTRNEWTSIEPMNTARSNAGAAHINRKIFVVGGWDGVS-LNSVEXQKP 3856
+ + H R L+ ++ LR+ +L CDV+L V +++ +AH++IL++CS YF AMF G + ES++ V I +D M+L+++F YT I + NV+ +L AA L+ + +++ CC FL+ L +NCLG++ FA+++SC L F NF + ES+EF+ L A QL+ IISSDEL V +EE+V+ A++ W KYS+ ER+ P+++QH+RLP+L P +LV V S+ L +C++L+ EA +YLLLP R +M Q RTRPRK E+L A GG +++ Y+ + W + + R G++ +D +Y VGG S L++V+++D + N W ++A R+ + V G ++ VGG DG LN VE Y+P N+W VA M T R G F++ +GG DG LNT+E Y+ + ++W IAPM RR D IY +GG D L + E YN N+W+ + M + RS G A +N ++ VGG+DG + L ++E P
Sbjct: 45 YISDKHPRQTLEVINLLRKHREL--CDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERPLM-QGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGS---------SYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHT--IAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDP 576 The following BLAST results are available for this feature:
BLAST of TCONS_00067228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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