TCONS_00067214 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067214
Unique Name	TCONS_00067214
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1123

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_466:149601..152203-

transcript sequence

>TCONS_00067214 ID=TCONS_00067214|Name=TCONS_00067214|organism=Clytia hemisphaerica|type=transcript|length=1123bp
ANTGAGCCCATCTTCTCATGGAGCAAGTCCTGCTGCATCTAGTGAAGCTA
AAGGTGATATTGATAGTCGATCGGTGTATGTTGGCAATGTTGATTACTCA
GCAACTGCGACAGAATTAGAACAACACTTTCACGGATGTGGATCTGTAAA
CCGAGTGACCATTCTTTGTGATAAGTTCAGTGGTCACCCAAAAGGATTTG
CTTTTGTGGAGTTTGCAGACAAAGAGAGTGTGGAAAATTCAGTAACGCTA
TCCGACACTCTTTTCAAAGGAAGACAAATCaagGTGACACCAAAACGAAC
CAATATCCCAGGTATTTCAACGACAAATCGAGGGTTCAGAGCACGAGGAC
GCGGGCGTGGTAGAGGAGGCTTTGGATACAGCCCAAGAAGAGGACGAGGA
GCATACAGATCTAGACGTGCATCTCATTTTTCACCATACTGAGAGAAAAA
ATGAAGACCcccagaaaaaaaagaaaacaaaagatgagaaaaaagagcga
aaagatgataaaaagaacaaaaaaaagaacaaaaaaaagaactcacaaaa
gagaaaagaataaaaagaatgaaaattaattgGGGCATTTAAGAAAAAGA
GGGTATACCACTATGCCTTGCGAAATTAAGTGAAATAGAGAATTACAGGA
AATTTGGTAGGCTCCTTATTAAGTCAACGATAAGTTGGATTGATGTTGAT
TGATTGCGGCTATTGATTGGACTGGATTCGGACTGGTTGCTTCAATATTC
CTTGTTGGTTGAGCTTCGCTAGCCATGATTCACTTGCTGATTTTAGtggg
tttgttttgattcagCAACAATTGTATGTCAAGTGTTTACAGAGGCAATT
ATATGGctactttaaaaaatatttttttaatgacttagttatttttattc
aaaagaattTTAACGGTTGTACTTTTCTCTTAATTTCCTttgaatttgaa
cttttttcatgtgaagatttttaaacaaaGTGACTTTTTAGTAGCTTTAT
GTGTAAGGGTATTTTATTATGTCCGTTTTGGAATTCGGTTATTTTTCTTG
TGTATAAGTTTATTTTACTAATAACCATTTTTCTTGCTAGAtagtttaaa
acaaaagatttctttgaattaac

Run BLAST on NCBI

transcript from alignment at scaffold_466:149601..152203-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067214 ID=TCONS_00067214|Name=TCONS_00067214|organism=Clytia hemisphaerica|type=transcript|length=2603bp|location=Sequence derived from alignment at scaffold_466:149601..152203- (Clytia hemisphaerica)
ANTGAGCCCATCTTCTCATGGTAGTCAAGGCAACACTTTTTCTTAAATCC
TTGAATTATACGCAATTTAAAAATCTTGAAGTTAGTCTTCTACTGGGTTT
TTACCAACATGAGGTTCTACAGGGTTCTGGTAGAAATCAAAATTTTATCC
ATCTGAACTTTTCATCATCATTGGAGAGAAAAATTGCTAACTTAAATTTT
GAGCTATCACGCACATTAAATTTTGGTGTCCTGGCTCAAAATTAAATTAA
GAAAAAAGAAAAGAAATTCTTTAAAAATGAAAGAACTTCATGTTTGAGTA
AAAGTGTGTACCTTAATCTTATTAATGTTCTCGTCATTTATTTATGCGCC
TGTAATTTTCACGCACTTCATGAAATAGGATATTTGCGCACGCTTTAATT
TTTAGGCATCTTGTAATTTGTGAGAATTTTTGGTAACAACTAACGTAAAG
AGGGCAAAAATACAAAGAAGTTTTAATTCCTAAATCTATTCATCATTACT
CTAGGCTATGATCTTTAAATATAAATATTGTATACTAGGAGCAAGTCCTG
CTGCATCTAGTGAAGCTAAAGGTGATATTGATAGTCGATCGGTGTATGTT
GGCAATGTAAGTTAAATTATTTCAACAAATTATTTCAATGACAAATCTAT
TTGACAACGTTTCTCATTATTTTTTCAATTTATTAATTAACCCATTACAG
CCTTGAATAGAATTAGAATTGAATAGACATCCTCCTCAAATTGAACATTC
GCTCTAACATTCTCTAGCCAAAGTGTGTATCATTTCAGGTTGATTACTCA
GCAACTGCGACAGAATTAGAACAACACTTTCACGGATGTGGATCTGTAAA
CCGAGTGACCATTCTTTGTGATAAGTTCAGTGGTCACCCAAAAGGGTAAG
AAGTATACTTTCTAAGGATACAGGGAATGGTTTGATGGGGATATTAAATC
ACTCTGATTCTAAGCTGCTGATGGCCTATCAAACTTTCTTTTAACTATAT
GGTACCTATATTTACCTCTTAGTTGCTTTTTACAAATCATCTTAAAGAAT
TACTTTAGAAATAACTTTGTTCTTCCTTTTCATATTCATTGAGTTTACTT
AGTCCTCTTCAGTCAGTGATAATCAATTAAAGATGTATTGTTTAATTAGG
CTTGCTATGTCAACAACCTGTCAGCTATCCAAATCCTTTTAATTTAGATT
TGCTTTTGTGGAGTTTGCAGACAAAGAGAGTGTGGAAAATTCAGTAACGC
TATCCGACACTCTTTTCAAAGGAAGACAAATCAAGGTAAAAAAATTGAAT
AAATTGAGTGATTTAGAAACTGTCCCATATAGTCCTTTAAATTTGGTTCA
TCATAAAAAATGATACAAATGATTTCAAAATAAGTAACATTGTTTGTTCA
TTTTAAAAGGTGACACCAAAACGAACCAATATCCCAGGTATTTCAACGAC
AAATCGAGGGTTCAGAGCACGAGGACGCGGGCGTGGTAGAGGAGGCTTTG
GATACAGCCCAAGAAGAGGACGAGGAGCATACAGGTAAACTTTCTTAACT
CTAATACTATATTTTGTACTCTATAAGATTTTTAGGGGGAAAAAAATGCA
CTAAAAAAGAGCCTTTTAGGGGTCCTTAAAACCTACTGTTTACTTCTTCA
TCCTCTGTAAAACTCGATTTCCAAAGGAAATAGGTGGCTTGGGAAAAGTG
CTTGGAGGAATCACTGGGCATAAGTTTGGCCAGAAACCATTGAACATTTT
TACCTTGGCTTATTATGTTAATTCTACCCTTTTTTCAAATCTTAGATCTA
GACGTGCATCTCATTTTTCACCATACTGAGAGGTAAGTTACCATTTCTTT
ATTCCTTTAAATATTATTTCTAATCTACTATGGAATCCTGCTATTGCATC
TATTTTTCTCATTATTACGCCTTAGAAAAAATGAAGACCCCCAGAAAAAA
AAGAAAACAAAAGATGAGAAAAAAGAGCGAAAAGATGATAAAAAGAACAA
AAAAAAGAACAAAAAAAAGAACTCACAAAAGAGAAAAGAATAAAAAGAAT
GAAAATTAATTGGGGCATTTAAGAAAAAGAGGGTATACCACTATGCCTTG
CGAAATTAAGTGAAATAGAGAATTACAGGAAATTTGGTAGGCTCCTTATT
AAGTCAACGATAAGTTGGATTGATGTTGATTGATTGCGGCTATTGATTGG
ACTGGATTCGGACTGGTTGCTTCAATATTCCTTGTTGGTTGAGCTTCGCT
AGCCATGATTCACTTGCTGATTTTAGTGGGTTTGTTTTGATTCAGCAACA
ATTGTATGTCAAGTGTTTACAGAGGCAATTATATGGCTACTTTAAAAAAT
ATTTTTTTAATGACTTAGTTATTTTTATTCAAAAGAATTTTAACGGTTGT
ACTTTTCTCTTAATTTCCTTTGAATTTGAACTTTTTTCATGTGAAGATTT
TTAAACAAAGTGACTTTTTAGTAGCTTTATGTGTAAGGGTATTTTATTAT
GTCCGTTTTGGAATTCGGTTATTTTTCTTGTGTATAAGTTTATTTTACTA
ATAACCATTTTTCTTGCTAGATAGTTTAAAACAAAAGATTTCTTTGAATT
AAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041991	XLOC_041991	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_466	supercontig	scaffold_466:149601..152203 -

Expression

No biomaterial libraries express this feature.

Blast

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BLAST of TCONS_00067214 vs. Swiss-Prot (Human)
Match: PABP2 (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.139e-44
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 2

Query:   50 KGDIDSRSVYVGNVDYSATATELEQHFHGCGSVNRVTILCDKFSGHPKGFAFVEFADKESVENSVTLSDTLFKGRQIKVTPKRTNIPGISTTN 328
            K + D+RS+YVGNVDY ATA ELE HFHGCGSVNRVTILCDKFSGHPKGFA++EF+DKESV  S+ L ++LF+GRQIKV PKRTN PGISTT+
Sbjct:  166 KMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258

The following BLAST results are available for this feature:

BLAST of TCONS_00067214 vs. Swiss-Prot (Human)

BLAST of TCONS_00067214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
PABP2	1.139e-44	76.34	Polyadenylate-binding protein 2 OS=Homo sapiens GN...	[more]

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TCONS_00067214 (transcript) - C. hemisphaerica

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