TCONS_00067214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067214
Unique NameTCONS_00067214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067214 ID=TCONS_00067214|Name=TCONS_00067214|organism=Clytia hemisphaerica|type=transcript|length=1123bp
ANTGAGCCCATCTTCTCATGGAGCAAGTCCTGCTGCATCTAGTGAAGCTA
AAGGTGATATTGATAGTCGATCGGTGTATGTTGGCAATGTTGATTACTCA
GCAACTGCGACAGAATTAGAACAACACTTTCACGGATGTGGATCTGTAAA
CCGAGTGACCATTCTTTGTGATAAGTTCAGTGGTCACCCAAAAGGATTTG
CTTTTGTGGAGTTTGCAGACAAAGAGAGTGTGGAAAATTCAGTAACGCTA
TCCGACACTCTTTTCAAAGGAAGACAAATCaagGTGACACCAAAACGAAC
CAATATCCCAGGTATTTCAACGACAAATCGAGGGTTCAGAGCACGAGGAC
GCGGGCGTGGTAGAGGAGGCTTTGGATACAGCCCAAGAAGAGGACGAGGA
GCATACAGATCTAGACGTGCATCTCATTTTTCACCATACTGAGAGAAAAA
ATGAAGACCcccagaaaaaaaagaaaacaaaagatgagaaaaaagagcga
aaagatgataaaaagaacaaaaaaaagaacaaaaaaaagaactcacaaaa
gagaaaagaataaaaagaatgaaaattaattgGGGCATTTAAGAAAAAGA
GGGTATACCACTATGCCTTGCGAAATTAAGTGAAATAGAGAATTACAGGA
AATTTGGTAGGCTCCTTATTAAGTCAACGATAAGTTGGATTGATGTTGAT
TGATTGCGGCTATTGATTGGACTGGATTCGGACTGGTTGCTTCAATATTC
CTTGTTGGTTGAGCTTCGCTAGCCATGATTCACTTGCTGATTTTAGtggg
tttgttttgattcagCAACAATTGTATGTCAAGTGTTTACAGAGGCAATT
ATATGGctactttaaaaaatatttttttaatgacttagttatttttattc
aaaagaattTTAACGGTTGTACTTTTCTCTTAATTTCCTttgaatttgaa
cttttttcatgtgaagatttttaaacaaaGTGACTTTTTAGTAGCTTTAT
GTGTAAGGGTATTTTATTATGTCCGTTTTGGAATTCGGTTATTTTTCTTG
TGTATAAGTTTATTTTACTAATAACCATTTTTCTTGCTAGAtagtttaaa
acaaaagatttctttgaattaac
Run BLAST on NCBI

transcript from alignment at scaffold_466:149601..152203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067214 ID=TCONS_00067214|Name=TCONS_00067214|organism=Clytia hemisphaerica|type=transcript|length=2603bp|location=Sequence derived from alignment at scaffold_466:149601..152203- (Clytia hemisphaerica)
ANTGAGCCCATCTTCTCATGGTAGTCAAGGCAACACTTTTTCTTAAATCC
TTGAATTATACGCAATTTAAAAATCTTGAAGTTAGTCTTCTACTGGGTTT
TTACCAACATGAGGTTCTACAGGGTTCTGGTAGAAATCAAAATTTTATCC
ATCTGAACTTTTCATCATCATTGGAGAGAAAAATTGCTAACTTAAATTTT
GAGCTATCACGCACATTAAATTTTGGTGTCCTGGCTCAAAATTAAATTAA
GAAAAAAGAAAAGAAATTCTTTAAAAATGAAAGAACTTCATGTTTGAGTA
AAAGTGTGTACCTTAATCTTATTAATGTTCTCGTCATTTATTTATGCGCC
TGTAATTTTCACGCACTTCATGAAATAGGATATTTGCGCACGCTTTAATT
TTTAGGCATCTTGTAATTTGTGAGAATTTTTGGTAACAACTAACGTAAAG
AGGGCAAAAATACAAAGAAGTTTTAATTCCTAAATCTATTCATCATTACT
CTAGGCTATGATCTTTAAATATAAATATTGTATACTAGGAGCAAGTCCTG
CTGCATCTAGTGAAGCTAAAGGTGATATTGATAGTCGATCGGTGTATGTT
GGCAATGTAAGTTAAATTATTTCAACAAATTATTTCAATGACAAATCTAT
TTGACAACGTTTCTCATTATTTTTTCAATTTATTAATTAACCCATTACAG
CCTTGAATAGAATTAGAATTGAATAGACATCCTCCTCAAATTGAACATTC
GCTCTAACATTCTCTAGCCAAAGTGTGTATCATTTCAGGTTGATTACTCA
GCAACTGCGACAGAATTAGAACAACACTTTCACGGATGTGGATCTGTAAA
CCGAGTGACCATTCTTTGTGATAAGTTCAGTGGTCACCCAAAAGGGTAAG
AAGTATACTTTCTAAGGATACAGGGAATGGTTTGATGGGGATATTAAATC
ACTCTGATTCTAAGCTGCTGATGGCCTATCAAACTTTCTTTTAACTATAT
GGTACCTATATTTACCTCTTAGTTGCTTTTTACAAATCATCTTAAAGAAT
TACTTTAGAAATAACTTTGTTCTTCCTTTTCATATTCATTGAGTTTACTT
AGTCCTCTTCAGTCAGTGATAATCAATTAAAGATGTATTGTTTAATTAGG
CTTGCTATGTCAACAACCTGTCAGCTATCCAAATCCTTTTAATTTAGATT
TGCTTTTGTGGAGTTTGCAGACAAAGAGAGTGTGGAAAATTCAGTAACGC
TATCCGACACTCTTTTCAAAGGAAGACAAATCAAGGTAAAAAAATTGAAT
AAATTGAGTGATTTAGAAACTGTCCCATATAGTCCTTTAAATTTGGTTCA
TCATAAAAAATGATACAAATGATTTCAAAATAAGTAACATTGTTTGTTCA
TTTTAAAAGGTGACACCAAAACGAACCAATATCCCAGGTATTTCAACGAC
AAATCGAGGGTTCAGAGCACGAGGACGCGGGCGTGGTAGAGGAGGCTTTG
GATACAGCCCAAGAAGAGGACGAGGAGCATACAGGTAAACTTTCTTAACT
CTAATACTATATTTTGTACTCTATAAGATTTTTAGGGGGAAAAAAATGCA
CTAAAAAAGAGCCTTTTAGGGGTCCTTAAAACCTACTGTTTACTTCTTCA
TCCTCTGTAAAACTCGATTTCCAAAGGAAATAGGTGGCTTGGGAAAAGTG
CTTGGAGGAATCACTGGGCATAAGTTTGGCCAGAAACCATTGAACATTTT
TACCTTGGCTTATTATGTTAATTCTACCCTTTTTTCAAATCTTAGATCTA
GACGTGCATCTCATTTTTCACCATACTGAGAGGTAAGTTACCATTTCTTT
ATTCCTTTAAATATTATTTCTAATCTACTATGGAATCCTGCTATTGCATC
TATTTTTCTCATTATTACGCCTTAGAAAAAATGAAGACCCCCAGAAAAAA
AAGAAAACAAAAGATGAGAAAAAAGAGCGAAAAGATGATAAAAAGAACAA
AAAAAAGAACAAAAAAAAGAACTCACAAAAGAGAAAAGAATAAAAAGAAT
GAAAATTAATTGGGGCATTTAAGAAAAAGAGGGTATACCACTATGCCTTG
CGAAATTAAGTGAAATAGAGAATTACAGGAAATTTGGTAGGCTCCTTATT
AAGTCAACGATAAGTTGGATTGATGTTGATTGATTGCGGCTATTGATTGG
ACTGGATTCGGACTGGTTGCTTCAATATTCCTTGTTGGTTGAGCTTCGCT
AGCCATGATTCACTTGCTGATTTTAGTGGGTTTGTTTTGATTCAGCAACA
ATTGTATGTCAAGTGTTTACAGAGGCAATTATATGGCTACTTTAAAAAAT
ATTTTTTTAATGACTTAGTTATTTTTATTCAAAAGAATTTTAACGGTTGT
ACTTTTCTCTTAATTTCCTTTGAATTTGAACTTTTTTCATGTGAAGATTT
TTAAACAAAGTGACTTTTTAGTAGCTTTATGTGTAAGGGTATTTTATTAT
GTCCGTTTTGGAATTCGGTTATTTTTCTTGTGTATAAGTTTATTTTACTA
ATAACCATTTTTCTTGCTAGATAGTTTAAAACAAAAGATTTCTTTGAATT
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041991XLOC_041991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067214-exon-scaffold_466-1575043694:152184..152203TCONS_00067214-exon-scaffold_466-1575043694:152184..152203Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1575043694:151598..151665TCONS_00067214-exon-scaffold_466-1575043694:151598..151665Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1575043694:151309..151415TCONS_00067214-exon-scaffold_466-1575043694:151309..151415Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1575043694:150919..151006TCONS_00067214-exon-scaffold_466-1575043694:150919..151006Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1575043694:150670..150794TCONS_00067214-exon-scaffold_466-1575043694:150670..150794Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1575043694:150372..150408TCONS_00067214-exon-scaffold_466-1575043694:150372..150408Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1575043694:149601..150278TCONS_00067214-exon-scaffold_466-1575043694:149601..150278Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:152184..152203TCONS_00067214-exon-scaffold_466-1510915933:152184..152203Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:151598..151665TCONS_00067214-exon-scaffold_466-1510915933:151598..151665Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:151309..151415TCONS_00067214-exon-scaffold_466-1510915933:151309..151415Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:150919..151006TCONS_00067214-exon-scaffold_466-1510915933:150919..151006Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:150670..150794TCONS_00067214-exon-scaffold_466-1510915933:150670..150794Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:150372..150408TCONS_00067214-exon-scaffold_466-1510915933:150372..150408Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1510915933:149601..150278TCONS_00067214-exon-scaffold_466-1510915933:149601..150278Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:152184..152203TCONS_00067214-exon-scaffold_466-1491911889:152184..152203Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:151598..151665TCONS_00067214-exon-scaffold_466-1491911889:151598..151665Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:151309..151415TCONS_00067214-exon-scaffold_466-1491911889:151309..151415Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:150919..151006TCONS_00067214-exon-scaffold_466-1491911889:150919..151006Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:150670..150794TCONS_00067214-exon-scaffold_466-1491911889:150670..150794Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:150372..150408TCONS_00067214-exon-scaffold_466-1491911889:150372..150408Clytia hemisphaericaexon
TCONS_00067214-exon-scaffold_466-1491911889:149601..150278TCONS_00067214-exon-scaffold_466-1491911889:149601..150278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:149601..152203 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00067214 vs. Swiss-Prot (Human)
Match: PABP2 (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.139e-44
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 2 
Query:   50 KGDIDSRSVYVGNVDYSATATELEQHFHGCGSVNRVTILCDKFSGHPKGFAFVEFADKESVENSVTLSDTLFKGRQIKVTPKRTNIPGISTTN 328
            K + D+RS+YVGNVDY ATA ELE HFHGCGSVNRVTILCDKFSGHPKGFA++EF+DKESV  S+ L ++LF+GRQIKV PKRTN PGISTT+
Sbjct:  166 KMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 258
The following BLAST results are available for this feature:
BLAST of TCONS_00067214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PABP21.139e-4476.34Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
back to top