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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067213 ID=TCONS_00067213|Name=TCONS_00067213|organism=Clytia hemisphaerica|type=transcript|length=2652bpRun BLAST on NCBI protein sequence of TCONS_00067213-protein >TCONS_00067213-protein ID=TCONS_00067213-protein|Name=TCONS_00067213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MLSLAKFFHLQTYWAKDIVFLLTEHNVYGMKAWLQGYFEDEQTDVRSERLRun BLAST on NCBI transcript from alignment at scaffold_466:122449..148281- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067213 ID=TCONS_00067213|Name=TCONS_00067213|organism=Clytia hemisphaerica|type=transcript|length=25833bp|location=Sequence derived from alignment at scaffold_466:122449..148281- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_466:122449..148281- >TCONS_00067213 ID=TCONS_00067213|Name=TCONS_00067213|organism=Clytia hemisphaerica|type=CDS|length=9702bp|location=Sequence derived from alignment at scaffold_466:122449..148281- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067213 vs. Swiss-Prot (Human)
Match: GPAA1 (Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3) HSP 1 Score: 224.942 bits (572), Expect = 9.163e-63 Identity = 115/261 (44.06%), Postives = 172/261 (65.90%), Query Frame = 2
Query: 551 LNGTNIYGIYRSPRASGVESIVLNIPNHGGCNSTAGISLMLSLAKFFHLQTYWAKDIVFLLTEHNVYGMKAWLQGYFEDEQTDVRSERLEGHAGSIQAALTVDLESENVLYFDISIHGMNGMQPNLDLVHLLVRIANYESVPVKLQFQNSLYVAPHDFK------QSLDTLMRTMSWQISGIPYGNHGLFYKYRIEAYTLKGISSNPNIGRNYPVDFESIGRYIEGVFRSINNLLEHIHQSFFMYLLPNTNRYISIGLYIP 1315
++GTN+YGI R+PRA+ ES+VL +P ++ + L+L+LA F Q YWAKDIVFL+TEH++ G +AWL+ Y + T ++S L+G AG+IQAA+ ++L S+ V D+++ G+NG PNLDL++L + LQ + + P D+ Q L TL+ + Q SG P+G+HGLF +YR+EA TL+GI+S R Y D ++G+ +EG+FR +N+LLE +HQSFF+YLLP +R++SIGLY+P
Sbjct: 124 VSGTNVYGILRAPRAASTESLVLTVPCGSDSTNSQAVGLLLALAAHFRGQIYWAKDIVFLVTEHDLLGTEAWLEAYHDVNVTGMQSSPLQGRAGAIQAAVALELSSDVVTSLDVAVEGLNGQLPNLDLLNLFQTFCQKGGLLCTLQGK----LQPEDWTSLDGPLQGLQTLLLMVLRQASGRPHGSHGLFLRYRVEALTLRGINSF----RQYKYDLVAVGKALEGMFRKLNHLLERLHQSFFLYLLPGLSRFVSIGLYMP 376 The following BLAST results are available for this feature:
BLAST of TCONS_00067213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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