TCONS_00067208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067208
Unique NameTCONS_00067208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067208 ID=TCONS_00067208|Name=TCONS_00067208|organism=Clytia hemisphaerica|type=transcript|length=666bp
ttgcCGTAGATCACGATAAAGTTGTACTTGAATGGAAAGAATCAATTGAG
AAATATTATTTACAAATGAAAATCAGGGATAGATATTTGTGATAAAGAAC
AGGTTGCAAGATATGCCTCAACTGTTCCGAGACCCTTTTGCTACCAGatc
ATTATGGACAACTTAGACTTTGAACAAAAGACAAGACACCAAGGGAAAGA
CAATCATAACAACTCCATCCACTGGGTACAATTTATGGCAGTCAAAGATC
GAATTGCTCCTGCGGATGTGAAGCAAACCCTGgaagaattttcaaattct
gatgttTTACCTGGTGAGCAGACTCacgatattttgaccaagaCGTTCAC
AATACTGATAGCTCGCACTCTCGTCAAATTCCTACCAGCtttcaaaatgt
ttgaaaaaaatgtaccAGACCATATCAAACACATTTACACTGAAGAAATG
TCCAAAAAATCAGAGCGTGTTGGATTAGGATTGATCTTCAGACCAGAGAC
AACGACCAGTGACATGGTGGCTATTATGAGAGAGATACAAGAGAAGTATG
TTCCACAAGTTAAAGATGAAAATGGGGTTATTGAAaCAAAAGACAAGATA
TTTAGAAAATCAACAACAGGGGCACAGCACGGTACAACTGAGTGGTCAAT
GAACGTTAGCCATATG
Run BLAST on NCBI

protein sequence of TCONS_00067208-protein

>TCONS_00067208-protein ID=TCONS_00067208-protein|Name=TCONS_00067208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MDNLDFEQKTRHQGKDNHNNSIHWVQFMAVKDRIAPADVKQTLEEFSNSD
VLPGEQTHDILTKTFTILIARTLVKFLPAFKMFEKNVPDHIKHIYTEEMS
KKSERVGLGLIFRPETTTSDMVAIMREIQEKYVPQVKDENGVIETKDKIF
RKSTTGAQHGTTEWSMNVSHM
Run BLAST on NCBI

transcript from alignment at scaffold_466:63228..65285-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067208 ID=TCONS_00067208|Name=TCONS_00067208|organism=Clytia hemisphaerica|type=transcript|length=2058bp|location=Sequence derived from alignment at scaffold_466:63228..65285- (Clytia hemisphaerica)
TTGCCGTAGATCACGATAAAGTTGTACTTGAATGGAAAGAATCAATTGAG
AAATATTATTTACAAATGAAAATCAGGGATAGATATTTGTGATAAAGAAC
AGGTTGCAAGATATGCCTCAACTGTTCCGAGACCCTTTTGCTACCAGGTG
AGTATGGAATCGATGAAATTTTATTTCATTTTGAAATATTTTAAGAATGA
TATTCAAGGTTTTCCGAGGAATCCTAAAAAATAAGTTAGAAGTTGTTTTC
GTTGGTAGAATGATCCTCTGAATACCTTTTCAATCTTGAGGTCTGAATAA
GTAAGGCGAATTATATTTTTCAGATCATTATGGACAACTTAGACTTTGAA
CAAAAGACAAGACACCAAGGGAAAGACAATCATAACAACTCCATCCACTG
GGTACAATTTATGGCAGTCAAAGATCGAATTGCTCCTGCGGATGGTAAGT
CAAACTTAGGACATTCTTATTCCACTAATTAGGTTTTCAATTTTTCTCAA
CCCCCTGGCTTTATTAAAGACCTTAGTTTTAAAAGTTTTGAAGAATTTTA
GTAGTGAGGTGAATGTAGTAATTGAGGTGAATCTCAGAAATTTTTGTGTT
ACATCTTAATTATAGGCAGATGATTTTCGGGAGAGTGGTTCAGTTATCTT
AGGGATATTTCAGAATCTCAGAAGCAAACTCAATATTATGCTTATCATAC
TGTATGGTTATTTTTCAAAATCATCAAGATTGGGATTTTATCATAAGATA
TTGATGTAGTCTTAGTTCTGTATCTACGTATAGTATGTTCAATCAATTAT
TTTTCATAGTGAAGCAAACCCTGGAAGAATTTTCAAATTCTGATGTTTTA
CCTGGTGAGCAGACTCACGATATTTTGACCAAGACGTTCACAATACTGAT
AGCTCGCACTCTCGTCAAATTCCTACCAGCTTTCAAAATGTTTGAAAAAA
ATGTACCAGACCATATCAAACACATTTACACTGAAGAAATGTCCAAAAAA
TCAGAGCGTGTAAGTTGGATTTTTAGATATATAACTCTTCTAGGTATAAT
TGAAAAGAAGAAAAATTTCACAATTTAGGTGAAAAAAAGAAATATTGGAG
GATATTGGAGCTATTTTATTTGCCTGTTGTAAACTTTTTCGATCAATTTT
TCAACACCTCCAGGTTGGATTAGGATTGATCTTCAGACCAGAGACAACGA
CCAGTGACATGGTGGCTATTATGAGAGAGATACAAGAGAAGTATGTTCCA
CAAGTTAAAGATGAAAATGGGGTTATTGAAGTGAGTTACAATTTTATATG
AAAATTTTTCTTTTTTCTTTTTATAAAAAAAATGTTATTTTTAAATTTTT
TTCGAATTCCTTTAGGTGAAATTTCCTATCTCGAACCCTCAAGGGGAAAG
AAACATCGTTCGAATTATGGAGGGTAAAAAAAGCCTAATTTTTCAAAAGA
AACTTTCGAGTTATGGAAGCTCTATTGTAATAGAGTACAGCACAGATAGA
ACTGTGTAAAAAATAAAATTTAGAAACCATTTAAAATTCTTTTAACAGAT
TATCGCTACAATTCTTCTTGGGGGTGATCGGCTTTCTGAGGAGAGAGCAG
CTAACTCTCAGAACGTTTTTCTTGATGGAAAAAATCTTTATGAGAAGCTC
AAAGGATTATGCCCTAAATTCGAAGATTGGCACCTATGGAGGACACTTTA
CGGGGTAAGCAGGAGTATTAAATTCTTTTATGATAACTTACTTTAGATTC
TATAGCTCTCATTTCTAACACTTTTAGAAAAATCATCACATCTTTGTATA
TCGTATCCACAAAACGAGGAAAGGAGGGTCAATAAAGTGTCTTTGTCCTA
CTTTAATAATTTTCATTGAAGAAGTGAAGGTTTGTGACACCTAGGAAATT
TTAAGGCAAAAAATCATAAAATGGGAAGGGTCGTGATAAACATGAGAGTA
ATGTTATGTTTTTATTTTCATTATTAGACAAAAGACAAGATATTTAGAAA
ATCAACAACAGGGGCACAGCACGGTACAACTGAGTGGTCAATGAACGTTA
GCCATATG

Coding sequence (CDS) from alignment at scaffold_466:63228..65285-

>TCONS_00067208 ID=TCONS_00067208|Name=TCONS_00067208|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_466:63228..65285- (Clytia hemisphaerica)
ACAAAAGACAAGATATTTAGAAAATCAACAACAGGGGCACAGCACGGTAC
AACTGAGTGGTCAATGAACGTTAGCCATATGGTTGGATTAGGATTGATCT
TCAGACCAGAGACAACGACCAGTGACATGGTGGCTATTATGAGAGAGATA
CAAGAGAAGTATGTTCCACAAGTTAAAGATGAAAATGGGGTTATTGAATG
AAGCAAACCCTGGAAGAATTTTCAAATTCTGATGTTTTACCTGGTGAGCA
GACTCACGATATTTTGACCAAGACGTTCACAATACTGATAGCTCGCACTC
TCGTCAAATTCCTACCAGCTTTCAAAATGTTTGAAAAAAATGTACCAGAC
CATATCAAACACATTTACACTGAAGAAATGTCCAAAAAATCAGAGCGTAT
GGACAACTTAGACTTTGAACAAAAGACAAGACACCAAGGGAAAGACAATC
ATAACAACTCCATCCACTGGGTACAATTTATGGCAGTCAAAGATCGAATT
GCTCCTGCGGATGACAAAAGACAAGATATTTAGAAAATCAACAACAGGGG
CACAGCACGGTACAACTGAGTGGTCAATGAACGTTAGCCATATGGTTGGA
TTAGGATTGATCTTCAGACCAGAGACAACGACCAGTGACATGGTGGCTAT
TATGAGAGAGATACAAGAGAAGTATGTTCCACAAGTTAAAGATGAAAATG
GGGTTATTGAATGAAGCAAACCCTGGAAGAATTTTCAAATTCTGATGTTT
TACCTGGTGAGCAGACTCACGATATTTTGACCAAGACGTTCACAATACTG
ATAGCTCGCACTCTCGTCAAATTCCTACCAGCTTTCAAAATGTTTGAAAA
AAATGTACCAGACCATATCAAACACATTTACACTGAAGAAATGTCCAAAA
AATCAGAGCGTATGGACAACTTAGACTTTGAACAAAAGACAAGACACCAA
GGGAAAGACAATCATAACAACTCCATCCACTGGGTACAATTTATGGCAGT
CAAAGATCGAATTGCTCCTGCGGATGACAAAAGACAAGATATTTAGAAAA
TCAACAACAGGGGCACAGCACGGTACAACTGAGTGGTCAATGAACGTTAG
CCATATGGTTGGATTAGGATTGATCTTCAGACCAGAGACAACGACCAGTG
ACATGGTGGCTATTATGAGAGAGATACAAGAGAAGTATGTTCCACAAGTT
AAAGATGAAAATGGGGTTATTGAATGAAGCAAACCCTGGAAGAATTTTCA
AATTCTGATGTTTTACCTGGTGAGCAGACTCACGATATTTTGACCAAGAC
GTTCACAATACTGATAGCTCGCACTCTCGTCAAATTCCTACCAGCTTTCA
AAATGTTTGAAAAAAATGTACCAGACCATATCAAACACATTTACACTGAA
GAAATGTCCAAAAAATCAGAGCGTATGGACAACTTAGACTTTGAACAAAA
GACAAGACACCAAGGGAAAGACAATCATAACAACTCCATCCACTGGGTAC
AATTTATGGCAGTCAAAGATCGAATTGCTCCTGCGGATGACAAAAGACAA
GATATTTAGAAAATCAACAACAGGGGCACAGCACGGTACAACTGAGTGGT
CAATGAACGTTAGCCATATGGTTGGATTAGGATTGATCTTCAGACCAGAG
ACAACGACCAGTGACATGGTGGCTATTATGAGAGAGATACAAGAGAAGTA
TGTTCCACAAGTTAAAGATGAAAATGGGGTTATTGAATGAAGCAAACCCT
GGAAGAATTTTCAAATTCTGATGTTTTACCTGGTGAGCAGACTCACGATA
TTTTGACCAAGACGTTCACAATACTGATAGCTCGCACTCTCGTCAAATTC
CTACCAGCTTTCAAAATGTTTGAAAAAAATGTACCAGACCATATCAAACA
CATTTACACTGAAGAAATGTCCAAAAAATCAGAGCGTATGGACAACTTAG
ACTTTGAACAAAAGACAAGACACCAAGGGAAAGACAATCATAACAACTCC
ATCCACTGGGTACAATTTATGGCAGTCAAAGATCGAATTGCTCCTGCGGA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041987XLOC_041987Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067208-proteinTCONS_00067208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067208-exon-scaffold_466-1575043694:65139..65285TCONS_00067208-exon-scaffold_466-1575043694:65139..65285Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1575043694:64842..64962TCONS_00067208-exon-scaffold_466-1575043694:64842..64962Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1575043694:64277..64476TCONS_00067208-exon-scaffold_466-1575043694:64277..64476Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1575043694:64006..64122TCONS_00067208-exon-scaffold_466-1575043694:64006..64122Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1575043694:63228..63308TCONS_00067208-exon-scaffold_466-1575043694:63228..63308Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1510915933:65139..65285TCONS_00067208-exon-scaffold_466-1510915933:65139..65285Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1510915933:64842..64962TCONS_00067208-exon-scaffold_466-1510915933:64842..64962Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1510915933:64277..64476TCONS_00067208-exon-scaffold_466-1510915933:64277..64476Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1510915933:64006..64122TCONS_00067208-exon-scaffold_466-1510915933:64006..64122Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1510915933:63228..63308TCONS_00067208-exon-scaffold_466-1510915933:63228..63308Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1491911889:65139..65285TCONS_00067208-exon-scaffold_466-1491911889:65139..65285Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1491911889:64842..64962TCONS_00067208-exon-scaffold_466-1491911889:64842..64962Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1491911889:64277..64476TCONS_00067208-exon-scaffold_466-1491911889:64277..64476Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1491911889:64006..64122TCONS_00067208-exon-scaffold_466-1491911889:64006..64122Clytia hemisphaericaexon
TCONS_00067208-exon-scaffold_466-1491911889:63228..63308TCONS_00067208-exon-scaffold_466-1491911889:63228..63308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:63228..65285 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.310527	0.378516	0.791089	0.343981	0.837527	0.910009	0.698656	0.560634	0.327094	0.648254	0.393257	0.517024	0.619566	0.750663	0.793474	0.662293	0.641057	0.119466	0.0825243	0	0.150118	0.549166	0.267033	0.323696	0.416749	1.11582	0.425795	0	0.516992	0.175578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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