TCONS_00067207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067207
Unique NameTCONS_00067207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067207 ID=TCONS_00067207|Name=TCONS_00067207|organism=Clytia hemisphaerica|type=transcript|length=685bp
AAAAGAGTGACAAAGTGAGGCTAAATGGTGCAAAAGGCATGCAACATGTG
TCAATTTCTTGCCAGGCAAGTCGATTCTTCTACTCTGACCTTCTATGAAA
TGTGTTGAACTCAACATTGCTTTGAACACTGGAGAATTATTGGTAAGTAT
AAAAGAATTGACGTGAATCTCCTTTCCTCTACAACCAAAGTGATACAATT
TGGAGAATTTTTTGGACAAGTAATTGATTCTAAGTCAATGTCAATGTTGG
GACTTTTCAAAGGTTCAAGAAAGTCTTTTTTCACTGATAAATCAACAACT
CGATCCTCGTGTAAAATCAATTCgaagaaattgaaaatcatGCTGGCATC
AGTAAACCCGCTCTTGAATTTACTATGATAAACTTTGAGAACagaatttt
tgataatttccaTTTGTAGTTTTTTATCCAGAGTTTTAAAAGATGGTTTC
AGTGAATGGTTTAAAGTTTCCAAGATCATTTCTTTTATCATGATTTGACG
AACATACCCCTGGATGTCATACTTGTGAAAAACATTTAATATTACGAGCA
GATCCTCGTTGAAATTCTGACAACTTTCAATATACTTTACATCGATTTGC
TCCAACAAATAATcttgaaacattttcaaatggAGTGTTGTGCTGATTTT
GAATAAATCGTCAACTTCCGCTACATTGCAAActg
Run BLAST on NCBI

transcript from alignment at scaffold_466:446981..447757+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067207 ID=TCONS_00067207|Name=TCONS_00067207|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_466:446981..447757+ (Clytia hemisphaerica)
AAAAGAGTGACAAAGTGAGGCTAAATGGTGCAAAAGGCATGCAACATGTG TCAATTTCTTGCCAGGCAAGTCGATTCTTCTACTCTGACCTTCTATGAAA TGTGTTGAACTCAACATTGCTTTGAACACTGGAGAATTATTGGTAAGTAT AAAAGAATTGACGTGAATCTCCTTTCCTCTACAACCAAAGTGATACAATT TGGAGAATTTTTTGGACAAGTAATTGATTCTAAGTCAATGTCAATGTTGG GACTTTTCAAAGGTTCAAGAAAGTCTTTTTTCACTGATAAATCAACAACT CGATCCTCGTGTAAAATCAATTCgaagaaattgaaaatcatGNACTTTTC AAAGGTTCAAGAAAGTCTTTTTTCACTGATAAATCAACAACTCGATCCTC GTGTAAAATCAATTCgaagaaattgaaaatcatGCTGGCATCAGTAAACC CGCTCTTGAATTTACTATGATAAACTTTGAGAACagaatttttgataatt tccaTTTGTAGTTTTTTATCCAGAGTTTTAAAAGATGGTTTCAGTGAATG GTTTAAAGTTTCCAAGATCATTTCTTTTATCATGATTTGACGAACATACC CCTGGATGTCATACTTGTGAAAAACATTTAATATTACGAGCAGATCCTCG TTGAAATTCTGACAACTTTCAATATACTTTACATCGATTTGCTCCAACAA ATAATcttgaaacattttcaaatggAGTGTTGTGCTGATTTTGAATAAAT CGTCAACTTCCGCTACATTGCAAActg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041986XLOC_041986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067207-exon-scaffold_466-1491911889:446981..447242TCONS_00067207-exon-scaffold_466-1491911889:446981..447242Clytia hemisphaericaexon
TCONS_00067207-exon-scaffold_466-1510915933:446981..447242TCONS_00067207-exon-scaffold_466-1510915933:446981..447242Clytia hemisphaericaexon
TCONS_00067207-exon-scaffold_466-1575043694:446981..447242TCONS_00067207-exon-scaffold_466-1575043694:446981..447242Clytia hemisphaericaexon
TCONS_00067207-exon-scaffold_466-1491911889:447335..447757TCONS_00067207-exon-scaffold_466-1491911889:447335..447757Clytia hemisphaericaexon
TCONS_00067207-exon-scaffold_466-1510915933:447335..447757TCONS_00067207-exon-scaffold_466-1510915933:447335..447757Clytia hemisphaericaexon
TCONS_00067207-exon-scaffold_466-1575043694:447335..447757TCONS_00067207-exon-scaffold_466-1575043694:447335..447757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:446981..447757 +
Expression

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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 2.52348e-06 1.39005 0.0704889 0.283105 0.186718 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.0488653 0.405959 0.965758 0 0 0 0.020178 0.701889 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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