Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067203 ID=TCONS_00067203|Name=TCONS_00067203|organism=Clytia hemisphaerica|type=transcript|length=580bp
CCCGGAAGTTGAGACGAATAAAATGTGAGGCTGGGAGGAAGCTTTCTACC
TAGATAATCACTAGATAATTTATTTCTAGTTATTTGAACAGCTAAATACT
TACCTGCATAATCGTCAACTACCATATCTGTCACCTCTTCTGCACCATTT
TGATATTGCTGCTGCGTTGTTGTGTTGTTAGAAACGCCATTGGTTGCTAA
GGGAGGGGCTGAGCCACCCGCATTTTCACTACTAGTAGATGGCGTTATGT
CCATATTCGAATTATTTTGTTGTGAGTTCCGCACAAGAGAGGATGGTGGA
TTAGAGTTGGTAGACAGGCTACGCGAAGGACTAGCACACGGGCTGTTACG
TAGGCTACGTGAAGGGCTGTGCGCGTACGTTTTGACTTCTCCGTCGCAAC
CGTTGACCATTTCAATGAATTGACGacatttcaatttgaaaaatagatCA
GAGTTTTGGTCCAATAGGCCAGGGTATAGGGTTTGAATAGCATCAATTGC
TTCACTGATTCTTCCAGACAGAATGAGGCGTTGAATACCTGTTCAATAAA
TAGTTCATTTAGGTATTCtcgatatgcgta Run BLAST on NCBI transcript from alignment at scaffold_466:408368..409008+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067203 ID=TCONS_00067203|Name=TCONS_00067203|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at scaffold_466:408368..409008+ (Clytia hemisphaerica)
CCCGGAAGTTGAGACGAATAAAATGTGAGGCTGGGAGGAAGCTTTCTACC
TAGATAATCACTAGATAATTTATTTCTAGTTATTTGAACAGCTAAATACT
TACCTGCATAATCGTCAACTACCATATCTGTCACCTCTTCTGCACCATTT
TGATATTGCTGCTGCGTTGTTGTGTTGTTAGAAACGCCATTGGTTGCTAA
GGTAGGAGCTGAACCACCGGCACTTTCACTACTAGTAGANGGAAACGCCA
TTGGTTGCTAAGGGAGGGGCTGAGCCACCCGCATTTTCACTACTAGTAGA
TGGCGTTATGTCCATATTCGAATTATTTTGTTGTGAGTTCCGCACAAGAG
AGGATGGTGGATTAGAGTTGGTAGACAGGCTACGCGAAGGACTAGCACAC
GGGCTGTTACGTAGGCTACGTGAAGGGCTGTGCGCGTACGTTTTGACTTC
TCCGTCGCAACCGTTGACCATTTCAATGAATTGACGacatttcaatttga
aaaatagatCAGAGTTTTGGTCCAATAGGCCAGGGTATAGGGTTTGAATA
GCATCAATTGCTTCACTGATTCTTCCAGACAGAATGAGGCGTTGAATACC
TGTTCAATAAATAGTTCATTTAGGTATTCtcgatatgcgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067203-exon-scaffold_466-1491911889:408368..408568 | TCONS_00067203-exon-scaffold_466-1491911889:408368..408568 | Clytia hemisphaerica | exon |
| TCONS_00067203-exon-scaffold_466-1510915933:408368..408568 | TCONS_00067203-exon-scaffold_466-1510915933:408368..408568 | Clytia hemisphaerica | exon |
| TCONS_00067203-exon-scaffold_466-1575043694:408368..408568 | TCONS_00067203-exon-scaffold_466-1575043694:408368..408568 | Clytia hemisphaerica | exon |
| TCONS_00067203-exon-scaffold_466-1491911889:408630..409008 | TCONS_00067203-exon-scaffold_466-1491911889:408630..409008 | Clytia hemisphaerica | exon |
| TCONS_00067203-exon-scaffold_466-1510915933:408630..409008 | TCONS_00067203-exon-scaffold_466-1510915933:408630..409008 | Clytia hemisphaerica | exon |
| TCONS_00067203-exon-scaffold_466-1575043694:408630..409008 | TCONS_00067203-exon-scaffold_466-1575043694:408630..409008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:408368..409008 + |
Blast
BLAST of TCONS_00067203 vs. Swiss-Prot (Human)
Match: RBP10 (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.946e-18 Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = -3 Query: 339 IQRLILSGRISEAIDAIQTLYPGLLDQNSDLFFKLKCRQFIEMVNGCDGEVK-----------TYAHSPSRSLRNSP 536
IQ+L+L GR+ EAI+ Q YPGLL+ N +L F LKCRQF+EMVNG D EV+ +Y SPS S R+ P
Sbjct: 298 IQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGP 374
The following BLAST results are available for this feature:
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