TCONS_00067203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067203
Unique NameTCONS_00067203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067203 ID=TCONS_00067203|Name=TCONS_00067203|organism=Clytia hemisphaerica|type=transcript|length=580bp
CCCGGAAGTTGAGACGAATAAAATGTGAGGCTGGGAGGAAGCTTTCTACC
TAGATAATCACTAGATAATTTATTTCTAGTTATTTGAACAGCTAAATACT
TACCTGCATAATCGTCAACTACCATATCTGTCACCTCTTCTGCACCATTT
TGATATTGCTGCTGCGTTGTTGTGTTGTTAGAAACGCCATTGGTTGCTAA
GGGAGGGGCTGAGCCACCCGCATTTTCACTACTAGTAGATGGCGTTATGT
CCATATTCGAATTATTTTGTTGTGAGTTCCGCACAAGAGAGGATGGTGGA
TTAGAGTTGGTAGACAGGCTACGCGAAGGACTAGCACACGGGCTGTTACG
TAGGCTACGTGAAGGGCTGTGCGCGTACGTTTTGACTTCTCCGTCGCAAC
CGTTGACCATTTCAATGAATTGACGacatttcaatttgaaaaatagatCA
GAGTTTTGGTCCAATAGGCCAGGGTATAGGGTTTGAATAGCATCAATTGC
TTCACTGATTCTTCCAGACAGAATGAGGCGTTGAATACCTGTTCAATAAA
TAGTTCATTTAGGTATTCtcgatatgcgta
Run BLAST on NCBI

transcript from alignment at scaffold_466:408368..409008+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067203 ID=TCONS_00067203|Name=TCONS_00067203|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at scaffold_466:408368..409008+ (Clytia hemisphaerica)
CCCGGAAGTTGAGACGAATAAAATGTGAGGCTGGGAGGAAGCTTTCTACC
TAGATAATCACTAGATAATTTATTTCTAGTTATTTGAACAGCTAAATACT
TACCTGCATAATCGTCAACTACCATATCTGTCACCTCTTCTGCACCATTT
TGATATTGCTGCTGCGTTGTTGTGTTGTTAGAAACGCCATTGGTTGCTAA
GGTAGGAGCTGAACCACCGGCACTTTCACTACTAGTAGANGGAAACGCCA
TTGGTTGCTAAGGGAGGGGCTGAGCCACCCGCATTTTCACTACTAGTAGA
TGGCGTTATGTCCATATTCGAATTATTTTGTTGTGAGTTCCGCACAAGAG
AGGATGGTGGATTAGAGTTGGTAGACAGGCTACGCGAAGGACTAGCACAC
GGGCTGTTACGTAGGCTACGTGAAGGGCTGTGCGCGTACGTTTTGACTTC
TCCGTCGCAACCGTTGACCATTTCAATGAATTGACGacatttcaatttga
aaaatagatCAGAGTTTTGGTCCAATAGGCCAGGGTATAGGGTTTGAATA
GCATCAATTGCTTCACTGATTCTTCCAGACAGAATGAGGCGTTGAATACC
TGTTCAATAAATAGTTCATTTAGGTATTCtcgatatgcgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041982XLOC_041982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067203-exon-scaffold_466-1491911889:408368..408568TCONS_00067203-exon-scaffold_466-1491911889:408368..408568Clytia hemisphaericaexon
TCONS_00067203-exon-scaffold_466-1510915933:408368..408568TCONS_00067203-exon-scaffold_466-1510915933:408368..408568Clytia hemisphaericaexon
TCONS_00067203-exon-scaffold_466-1575043694:408368..408568TCONS_00067203-exon-scaffold_466-1575043694:408368..408568Clytia hemisphaericaexon
TCONS_00067203-exon-scaffold_466-1491911889:408630..409008TCONS_00067203-exon-scaffold_466-1491911889:408630..409008Clytia hemisphaericaexon
TCONS_00067203-exon-scaffold_466-1510915933:408630..409008TCONS_00067203-exon-scaffold_466-1510915933:408630..409008Clytia hemisphaericaexon
TCONS_00067203-exon-scaffold_466-1575043694:408630..409008TCONS_00067203-exon-scaffold_466-1575043694:408630..409008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:408368..409008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.472717	0.537433	0.835038	0	0	0	0.871723	0.869935	0	2.97288	0	3.14995	0	0	0	0	1.55345e-09	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00067203 vs. Swiss-Prot (Human)
Match: RBP10 (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.946e-18
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = -3 
Query:  339 IQRLILSGRISEAIDAIQTLYPGLLDQNSDLFFKLKCRQFIEMVNGCDGEVK-----------TYAHSPSRSLRNSP 536
            IQ+L+L GR+ EAI+  Q  YPGLL+ N +L F LKCRQF+EMVNG D EV+           +Y  SPS S R+ P
Sbjct:  298 IQKLVLEGRVGEAIETTQRFYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPGSPSLSPRHGP 374
The following BLAST results are available for this feature:
BLAST of TCONS_00067203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBP105.946e-1850.65Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
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