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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067202 ID=TCONS_00067202|Name=TCONS_00067202|organism=Clytia hemisphaerica|type=transcript|length=1369bp
gtCGAGAGCTCCTTCCAAATTATCCATAAGATCAACTCGACGATGTATTA
CTGGAAGTTTACTTATACTGATTGGATTCGGtattcttttcttattttca
caacaATCTCTACGTCTTGAAAATATTCACGATCGATCAAATCACCACAA
ATTATCTGACGTGGCGCAGGTGAAAAGAGGTAATGAGCGCCATTCAGAAT
CGAATGTGGATGTACATCAGAGAGccttagaaaaaatcaaaataaatcaa
gTTGAATCCGTTATCAAAGTTGGTGCAgcagaaaatgagaaaaaattcgA
ATCGCTAAAGAAAGAATCTATTTCAAACAAAGTTATTGAAGAAATAGATG
AAAATCCACCATTGAATAAACAACCTGAGATTGTTTACGAAAAATTACCC
GTTGTAAAAGACATGCAGAATGATTTAAAAATTCACGAAGTTAACAGACA
TGACACTGGAATCAAACTGTATAAAGAAGAACCACTTGTCAGCGTTAAAG
ATGATACTTTACAGACCACagaaaaaccttttaaaaaagCTGAATACAAG
ATCACATCTGGGTTTGTAGAATATATACCAGGTGAAAAAGGTGCGTTCCA
TATAGTGCAGAATTTTCTTTTGTATATAGATCCAGATTTTACCGAACCAG
TAAATGCATCTCAAAGCAAGAGAGCTAAAAAACAGAACGAGCTGGAACAA
ACATTGCAATCGAATCTCAACCACCCCGTTATAAATCGTATACATATCAT
GTACTCTCATAAACCTTTATTTCAGTATCTCCAAAAACTAAACCTAACAA
ACCGCCATAAATTAATAACAGTCTATTTTGAAGATACACCAAAAATTAGT
GATTTTCTGCAATATATCGAAGATAAACTACAAAACAGATACGTCATTGT
TAATAATCAAGATATTGAAATAGGTGAAGAATGGGACGCAATAGATCTCG
GCAAATTCCGTGAACAACGAATCATGTATGCGATATCGCGTAATGTCAAG
GCTCACCATATGGCAGATAAGAACTGTTATGCGTCTTATACTGCTAATTG
TAACCCGGGGCAGCCTGATTACGGGTCAGCCGATTTATTCGCATTTTATA
ATGAGGGGAAAGTTCCTCCTGCTATGATGAAAGAGATGTCATACACTCAA
GCGAAATATGGTATGGAAAATGTCTTCATGTGGTATGCTAAATTTGAATG
GCATTATAATTTGTTTAACCCTTGTAAGGTATTGAAAATCTACCATGTTG
ATTGCTaccatattgataaaaaaggcCGTGACCGACAGAAACGAAATGAT
CACGTGTTAACGGTACCATTTACGAACCAATTGTATTTaaatttttaggg
ttttttctttttgaattat Run BLAST on NCBI protein sequence of TCONS_00067202-protein >TCONS_00067202-protein ID=TCONS_00067202-protein|Name=TCONS_00067202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
SRAPSKLSIRSTRRCITGSLLILIGFGILFLFSQQSLRLENIHDRSNHHK
LSDVAQVKRGNERHSESNVDVHQRALEKIKINQVESVIKVGAAENEKKFE
SLKKESISNKVIEEIDENPPLNKQPEIVYEKLPVVKDMQNDLKIHEVNRH
DTGIKLYKEEPLVSVKDDTLQTTEKPFKKAEYKITSGFVEYIPGEKGAFH
IVQNFLLYIDPDFTEPVNASQSKRAKKQNELEQTLQSNLNHPVINRIHIM
YSHKPLFQYLQKLNLTNRHKLITVYFEDTPKISDFLQYIEDKLQNRYVIV
NNQDIEIGEEWDAIDLGKFREQRIMYAISRNVKAHHMADKNCYASYTANC
NPGQPDYGSADLFAFYNEGKVPPAMMKEMSYTQAKYGMENVFMWYAKFEW
HYNLFNPCKVLKIYHVDCYHIDKKGRDRQKRNDHVLTVPFTNQLYLNF Run BLAST on NCBI transcript from alignment at scaffold_466:352403..354084+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067202 ID=TCONS_00067202|Name=TCONS_00067202|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at scaffold_466:352403..354084+ (Clytia hemisphaerica)
gtCGAGAGCTCCTTCCAAATTATCCATAGTATGTTCAGTGTTCATATTCG
CGATTACTTATTGGCCTTCAAGTAGACAGCCAAAAAACGTATATGCTATA
GATCTAGTAGCAAAGACAAGCGACGCAAAATTATAGCAAAGTACAGCAGA
GCAGATTTTATGACACGgtaattttgattttgtattaTGAATAATttcag
tgtcataaaaatctgacACAAATTTTATTTGCGCCCCTTTTGTTTTGTCT
TTGCTGCTGGATATAATCTAAGGACACTTTAGTCTAAATATTATTTTAGA
CTTAGTAACTTCTTAAAGctttaaattcattttctttaCAGAGATCAACT
CGACGATGTATTACTGGAAGTTTACTTATACTGATTGGATTCGGtattct
tttcttattttcacaacaATCTCTACGTCTTGAAAATATTCACGATCGAT
CAAATCACCACAAATTATCTGACGTGGCGCAGGTGAAAAGAGGTAATGAG
CGCCATTCAGAATCGAATGTGGATGTACATCAGAGAGccttagaaaaaat
caaaataaatcaagTTGAATCCGTTATCAAAGTTGGTGCAgcagaaaatg
agaaaaaattcgAATCGCTAAAGAAAGAATCTATTTCAAACAAAGTTATT
GAAGAAATAGATGAAAATCCACCATTGAATAAACAACCTGAGATTGTTTA
CGAAAAATTACCCGTTGTAAAAGACATGCAGAATGATTTAAAAATTCACG
AAGTTAACAGACATGACACTGGAATCAAACTGTATAAAGAAGAACCACTT
GTCAGCGTTAAAGATGATACTTTACAGACCACagaaaaaccttttaaaaa
agCTGAATACAAGATCACATCTGGGTTTGTAGAATATATACCAGGTGAAA
AAGGTGCGTTCCATATAGTGCAGAATTTTCTTTTGTATATAGATCCAGAT
TTTACCGAACCAGTAAATGCATCTCAAAGCAAGAGAGCTAAAAAACAGAA
CGAGCTGGAACAAACATTGCAATCGAATCTCAACCACCCCGTTATAAATC
GTATACATATCATGTACTCTCATAAACCTTTATTTCAGTATCTCCAAAAA
CTAAACCTAACAAACCGCCATAAATTAATAACAGTCTATTTTGAAGATAC
ACCAAAAATTAGTGATTTTCTGCAATATATCGAAGATAAACTACAAAACA
GATACGTCATTGTTAATAATCAAGATATTGAAATAGGTGAAGAATGGGAC
GCAATAGATCTCGGCAAATTCCGTGAACAACGAATCATGTATGCGATATC
GCGTAATGTCAAGGCTCACCATATGGCAGATAAGAACTGTTATGCGTCTT
ATACTGCTAATTGTAACCCGGGGCAGCCTGATTACGGGTCAGCCGATTTA
TTCGCATTTTATAATGAGGGGAAAGTTCCTCCTGCTATGATGAAAGAGAT
GTCATACACTCAAGCGAAATATGGTATGGAAAATGTCTTCATGTGGTATG
CTAAATTTGAATGGCATTATAATTTGTTTAACCCTTGTAAGGTATTGAAA
ATCTACCATGTTGATTGCTaccatattgataaaaaaggcCGTGACCGACA
GAAACGAAATGATCACGTGTTAACGGTACCATTTACGAACCAATTGTATT
Taaatttttagggttttttctttttgaattat Coding sequence (CDS) from alignment at scaffold_466:352403..354084+ >TCONS_00067202 ID=TCONS_00067202|Name=TCONS_00067202|organism=Clytia hemisphaerica|type=CDS|length=2694bp|location=Sequence derived from alignment at scaffold_466:352403..354084+ (Clytia hemisphaerica)
tCGAGAGCTCCTTCCAAATTATCCATAAGATCAACTCGACGATGTATTAC
TGGAAGTTTACTTATACTGATTGGATTCGGtattcttttcttattttcac
aacaATCTCTACGTCTTGAAAATATTCACGATCGATCAAATCACCACAAA
TTATCTGACGTGGCGCAGGTGAAAAGAGGTAATGAGCGCCATTCAGAATC
GAATGTGGATGTACATCAGAGAGccttagaaaaaatcaaaataaatcaag
TTGAATCCGTTATCAAAGTTGGTGCAgcagaaaatgagaaaaaattcgAA
TCGCTAAAGAAAGAATCTATTTCAAACAAAGTTATTGAAGAAATAGATGA
AAATCCACCATTGAATAAACAACCTGAGATTGTTTACGAAAAATTACCCG
TTGTAAAAGACATGCAGAATGATTTAAAAATTCACGAAGTTAACAGACAT
GACACTGGAATCAAACTGTATAAAGAAGAACCACTTGTCAGCGTTAAAGA
TGATACTTTACAGACCACagaaaaaccttttaaaaaagCTGAATACAAGA
TCACATCTGGGTTTGTAGAATATATACCAGGTGAAAAAGGTGCGTTCCAT
ATAGTGCAGAATTTTCTTTTGTATATAGATCCAGATTTTACCGAACCAGT
AAATGCATCTCAAAGCAAGAGAGCTAAAAAACAGAACGAGCTGGAACAAA
CATTGCAATCGAATCTCAACCACCCCGTTATAAATCGTATACATATCATG
TACTCTCATAAACCTTTATTTCAGTATCTCCAAAAACTAAACCTAACAAA
CCGCCATAAATTAATAACAGTCTATTTTGAAGATACACCAAAAATTAGTG
ATTTTCTGCAATATATCGAAGATAAACTACAAAACAGATACGTCATTGTT
AATAATCAAGATATTGAAATAGGTGAAGAATGGGACGCAATAGATCTCGG
CAAATTCCGTGAACAACGAATCATGTATGCGATATCGCGTAATGTCAAGG
CTCACCATATGGCAGATAAGAACTGTTATGCGTCTTATACTGCTAATTGT
AACCCGGGGCAGCCTGATTACGGGTCAGCCGATTTATTCGCATTTTATAA
TGAGGGGAAAGTTCCTCCTGCTATGATGAAAGAGATGTCATACACTCAAG
CGAAATATGGTATGGAAAATGTCTTCATGTGGTATGCTAAATTTGAATGG
CATTATAATTTGTTTAACCCTTGTAAGGTATTGAAAATCTACCATGTTGA
TTGCTaccatattgataaaaaaggcCGTGACCGACAGAAACGAAATGATC
ACGTGTTAACGGTACCATTTACGAACCAATTGTATTTaaatttttagtCG
AGAGCTCCTTCCAAATTATCCATAAGATCAACTCGACGATGTATTACTGG
AAGTTTACTTATACTGATTGGATTCGGtattcttttcttattttcacaac
aATCTCTACGTCTTGAAAATATTCACGATCGATCAAATCACCACAAATTA
TCTGACGTGGCGCAGGTGAAAAGAGGTAATGAGCGCCATTCAGAATCGAA
TGTGGATGTACATCAGAGAGccttagaaaaaatcaaaataaatcaagTTG
AATCCGTTATCAAAGTTGGTGCAgcagaaaatgagaaaaaattcgAATCG
CTAAAGAAAGAATCTATTTCAAACAAAGTTATTGAAGAAATAGATGAAAA
TCCACCATTGAATAAACAACCTGAGATTGTTTACGAAAAATTACCCGTTG
TAAAAGACATGCAGAATGATTTAAAAATTCACGAAGTTAACAGACATGAC
ACTGGAATCAAACTGTATAAAGAAGAACCACTTGTCAGCGTTAAAGATGA
TACTTTACAGACCACagaaaaaccttttaaaaaagCTGAATACAAGATCA
CATCTGGGTTTGTAGAATATATACCAGGTGAAAAAGGTGCGTTCCATATA
GTGCAGAATTTTCTTTTGTATATAGATCCAGATTTTACCGAACCAGTAAA
TGCATCTCAAAGCAAGAGAGCTAAAAAACAGAACGAGCTGGAACAAACAT
TGCAATCGAATCTCAACCACCCCGTTATAAATCGTATACATATCATGTAC
TCTCATAAACCTTTATTTCAGTATCTCCAAAAACTAAACCTAACAAACCG
CCATAAATTAATAACAGTCTATTTTGAAGATACACCAAAAATTAGTGATT
TTCTGCAATATATCGAAGATAAACTACAAAACAGATACGTCATTGTTAAT
AATCAAGATATTGAAATAGGTGAAGAATGGGACGCAATAGATCTCGGCAA
ATTCCGTGAACAACGAATCATGTATGCGATATCGCGTAATGTCAAGGCTC
ACCATATGGCAGATAAGAACTGTTATGCGTCTTATACTGCTAATTGTAAC
CCGGGGCAGCCTGATTACGGGTCAGCCGATTTATTCGCATTTTATAATGA
GGGGAAAGTTCCTCCTGCTATGATGAAAGAGATGTCATACACTCAAGCGA
AATATGGTATGGAAAATGTCTTCATGTGGTATGCTAAATTTGAATGGCAT
TATAATTTGTTTAACCCTTGTAAGGTATTGAAAATCTACCATGTTGATTG
CTaccatattgataaaaaaggcCGTGACCGACAGAAACGAAATGATCACG
TGTTAACGGTACCATTTACGAACCAATTGTATTTaaatttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067202-exon-scaffold_466-1491911889:352403..352430 | TCONS_00067202-exon-scaffold_466-1491911889:352403..352430 | Clytia hemisphaerica | exon |
| TCONS_00067202-exon-scaffold_466-1510915933:352403..352430 | TCONS_00067202-exon-scaffold_466-1510915933:352403..352430 | Clytia hemisphaerica | exon |
| TCONS_00067202-exon-scaffold_466-1575043694:352403..352430 | TCONS_00067202-exon-scaffold_466-1575043694:352403..352430 | Clytia hemisphaerica | exon |
| TCONS_00067202-exon-scaffold_466-1491911889:352744..354084 | TCONS_00067202-exon-scaffold_466-1491911889:352744..354084 | Clytia hemisphaerica | exon |
| TCONS_00067202-exon-scaffold_466-1510915933:352744..354084 | TCONS_00067202-exon-scaffold_466-1510915933:352744..354084 | Clytia hemisphaerica | exon |
| TCONS_00067202-exon-scaffold_466-1575043694:352744..354084 | TCONS_00067202-exon-scaffold_466-1575043694:352744..354084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:352403..354084 + |
Blast
The following BLAST results are available for this feature:
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