TCONS_00067193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067193
Unique NameTCONS_00067193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067193 ID=TCONS_00067193|Name=TCONS_00067193|organism=Clytia hemisphaerica|type=transcript|length=1651bp
ATGCAATTTATCGAATACatataaaaagaaacatgtTGCATTTCACAATA
AAAGTTTGTTCGTTGATGCTAATAATAGTATCGATTTGTCATACAGCACC
AACTATGAACCCTTCAACAACACATGAAGAAGccacaaccacaacaacaa
cgacaataCCGCCTACAACAGCTGAATTAACGACCAAACACAAGAAAGAG
CCAGAACAGTCAACACCTACAACAACTACAACTATACCACCAACTATGAC
TGAGACGTCAACAAAACACAACGAACAGCCAGAACGACCAACATCTACAA
AAGCTACAACCACAACAACTACAACACCCACAACAACCACACCGCATACT
GCTGAGGCATCAACAAAACATAAGAAAGAAACAGAACAACCAACAACTGT
GACCACACCAAATATGACTGAGACATCAACAAAACCCAACAAAGCGCCAG
AACAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTGCTGAGACA
TCAACCAAACACAACGAAGGACCAGAACAGTCAACACCCTCAAAAGCAAC
AACCACACCACCTACTGCTGAGATATCAACCAAACACAACGAAGGACCAG
AACAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTGCTGAGACA
TCAACAAAACACAACGAAGGACCAGAACAGTCAACACCCTCAAAAGCAAC
AACCACAACGCCAACTGCTGAGACATCAACAAAACACAAGAAAGAACCGA
AACAATCAACAACCACAACAACTGCAACGCAATCTACTACCAAAACAACA
ACATCTTCCCCAAGTTTTGAAATAGATTGTCAATTCCAAGATGGTTCATC
TTTCAAATCTGGTGATATCATATCTCAACATTATCATCCTGTTACCAAAA
AACTATGCTTCAAAGTTTATTGTGGTAACTTGGGCTCTATCAAATCCCAA
AACTTCGATTGTGAAGATGAGAAAATAACAGAAACGACCCCAACAACGAC
CACCAAAGGTTCGGATGTCCAAGGCTCTGGCAAGAGAGGATCATCTTCAT
CAAAAACAACTGAAAATCCTTTACGTAGGAAACATACTGCATCAATCACA
TTCAATATTTTGTTAGCCCTCCTGATTATCATCCTACTTGTTGCTTTCAT
ATCAACTTATCGTAAATATAAAAAGACATTTCATTTGAATGCTTTTCACA
CTAAACGGGACACAGATATTCAGCTTGAAAGTGCTTACTCAAATTCGATG
GACGATTTATGATAAAGTGACCTATCTCCTACTACAATTCTCGACACATG
TGCAGGTTGAAGCTTTGGGATCCAAATTTTAGGATGACTTagaatgaaat
tttctaatcattaaaagttttttttgacttttcttttCTAATTTCTGATT
TTCTATTTCATGATTTTATCAAGATCTTAAAGTTTTTGCGACTTAGTTTT
AGTTATCTTAACTTGAGTCATCTTTGCTGGTATTTTAGCGATCAAGAATT
GTTAAAGCAAAGAATATTTACAATATTTAAATTCtaaatataattttata
aattattatcaaaatgaaattttttatataaacttACTTTATTGAGcttc
attttaaatattattaGTTCCTACTAAAACACAATAAAgcttaatttaaa
a
Run BLAST on NCBI

protein sequence of TCONS_00067193-protein

>TCONS_00067193-protein ID=TCONS_00067193-protein|Name=TCONS_00067193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
AIYRIHIKRNMLHFTIKVCSLMLIIVSICHTAPTMNPSTTHEEATTTTTT
TIPPTTAELTTKHKKEPEQSTPTTTTTIPPTMTETSTKHNEQPERPTSTK
ATTTTTTTPTTTTPHTAEASTKHKKETEQPTTVTTPNMTETSTKPNKAPE
QSTPSKATTTTPTAETSTKHNEGPEQSTPSKATTTPPTAEISTKHNEGPE
QSTPSKATTTTPTAETSTKHNEGPEQSTPSKATTTTPTAETSTKHKKEPK
QSTTTTTATQSTTKTTTSSPSFEIDCQFQDGSSFKSGDIISQHYHPVTKK
LCFKVYCGNLGSIKSQNFDCEDEKITETTPTTTTKGSDVQGSGKRGSSSS
KTTENPLRRKHTASITFNILLALLIIILLVAFISTYRKYKKTFHLNAFHT
KRDTDIQLESAYSNSMDDL
Run BLAST on NCBI

transcript from alignment at scaffold_466:269530..271339+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067193 ID=TCONS_00067193|Name=TCONS_00067193|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_466:269530..271339+ (Clytia hemisphaerica)
ATGCAATTTATCGAATACatataaaaagaaacatgtTGCATTTCACAATA
AAAGTTTGTTCGTTGATGCTAATAATAGTATCGATTTGTCATACAGCACC
AACTATGAACCCTTCAACAACACATGAAGAAGccacaaccacaacaacaa
cgacaataCCGCCTACAACAGCTGAATTAACGACCAAACACAAGAAAGAG
CCAGAACAGTCAACACCTACAACAACTACAACTATACCACCAACTATGAC
TGAGACGTCAACAAAACACAACGAACAGCCAGAACGACCAACATCTACAA
AAGCTACAACCACAACAACTACAACACCCACAACAACCACACCGCATACT
GCTGAGGCATCAACAAAACATAAGAAAGAAACAGAACAACCAACAACTGT
GACCACACCAAATATGACTGAGACATCAACAAAACCCAACAAAGCGCCAG
AACAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTGCTGAGACA
TCAACCAAACACAACGAAGGACCAGAACAGTCAACACCCTCAAAAGCAAC
AACCACACCACCTACTGCTGAGATATCAACCAAACACAACGAAGGACCAG
AACAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTGCTGAGACA
TCAACAAAACACAACGAAGGACCAGAACAGTCAACACCCTCAAAAGCAAC
AACCACAACGCCAACTGCTGAGACATCAACAAAACACAACGAAGGACCAG
AACAGTCAACAACAGCTACAACCACGCCACCTTCAGCTGAACAAACAACA
AAACACAAGAAAGAAACAGAACAACTAACATCTACAAAAGCAGCAACCAC
AGCAACGACAACCACAACGCCAACTGCTGAGACATCAACAAAACACAAGA
AAGAACCGAAACAATCAACAACCACAACAACTGCAACGCAATCTACTACC
AAAACAACAACATCTTCCCCAAGTTTTGAAATAGATTGTCAATTCCAAGA
TGGTTCATCTTTCAAATCTGGTGATATCATATCTCAACATTATCATCCTG
TTACCAAAAAACTATGCTTCAAAGTTTATTGTGGTAACTTGGGCTCTATC
AAATCCCAAAACTTCGATTGTGAAGATGAGAAAATAACAGAAACGACCCC
AACAACGACCACCAAAGGTTCGGATGTCCAAGGCTCTGGCAAGAGAGGAT
CATCTTCATCAAAAACAACTGAAAATCCTTTACGTAGGAAACATACTGCA
TCAATCACATTCAATATTTTGTTAGCCCTCCTGATTATCATCCTACTTGT
TGCTTTCATATCAACTTATCGTAAATATAAAAAGACATTTCATTTGAATG
CTTTTCACACTAAACGGGACACAGATATTCAGCTTGAAAGTGCTTACTCA
AATTCGATGGACGATTTATGATAAAGTGACCTATCTCCTACTACAATTCT
CGACACATGTGCAGGTTGAAGCTTTGGGATCCAAATTTTAGGATGACTTa
gaatgaaattttctaatcattaaaagttttttttgacttttcttttCTAA
TTTCTGATTTTCTATTTCATGATTTTATCAAGATCTTAAAGTTTTTGCGA
CTTAGTTTTAGTTATCTTAACTTGAGTCATCTTTGCTGGTATTTTAGCGA
TCAAGAATTGTTAAAGCAAAGAATATTTACAATATTTAAATTCtaaatat
aattttataaattattatcaaaatgaaattttttatataaacttACTTTA
TTGAGcttcattttaaatattattaGTTCCTACTAAAACACAATAAAgct
taatttaaaa

Coding sequence (CDS) from alignment at scaffold_466:269530..271339+

>TCONS_00067193 ID=TCONS_00067193|Name=TCONS_00067193|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_466:269530..271339+ (Clytia hemisphaerica)
GCAATTTATCGAATACatataaaaagaaacatgtTGCATTTCACAATAAA
AGTTTGTTCGTTGATGCTAATAATAGTATCGATTTGTCATACAGCACCAA
CTATGAACCCTTCAACAACACATGAAGAAGccacaaccacaacaacaacg
acaataCCGCCTACAACAGCTGAATTAACGACCAAACACAAGAAAGAGCC
AGAACAGTCAACACCTACAACAACTACAACTATACCACCAACTATGACTG
AGACGTCAACAAAACACAACGAACAGCCAGAACGACCAACATCTACAAAA
GCTACAACCACAACAACTACAACACCCACAACAACCACACCGCATACTGC
TGAGGCATCAACAAAACATAAGAAAGAAACAGAACAACCAACAACTGTGA
CCACACCAAATATGACTGAGACATCAACAAAACCCAACAAAGCGCCAGAA
CAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTGCTGAGACATC
AACCAAACACAACGAAGGACCAGAACAGTCAACACCCTCAAAAGCAACAA
CCACACCACCTACTGCTGAGATATCAACCAAACACAACGAAGGACCAGAA
CAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTGCTGAGACATC
AACAAAACACAACGAAGGACCAGAACAGTCAACACCCTCAAAAGCAACAA
CCACAACGCCAACTGCTGAGACATCAACAAAACACAAGAAAGAACCGAAA
CAATCAACAACCACAACAACTGCAACGCAATCTACTACCAAAACAACAAC
ATCTTCCCCAAGTTTTGAAATAGATTGTCAATTCCAAGATGGTTCATCTT
TCAAATCTGGTGATATCATATCTCAACATTATCATCCTGTTACCAAAAAA
CTATGCTTCAAAGTTTATTGTGGTAACTTGGGCTCTATCAAATCCCAAAA
CTTCGATTGTGAAGATGAGAAAATAACAGAAACGACCCCAACAACGACCA
CCAAAGGTTCGGATGTCCAAGGCTCTGGCAAGAGAGGATCATCTTCATCA
AAAACAACTGAAAATCCTTTACGTAGGAAACATACTGCATCAATCACATT
CAATATTTTGTTAGCCCTCCTGATTATCATCCTACTTGTTGCTTTCATAT
CAACTTATCGTAAATATAAAAAGACATTTCATTTGAATGCTTTTCACACT
AAACGGGACACAGATATTCAGCTTGAAAGTGCTTACTCAAATTCGATGGA
CGATTTATGAGCAATTTATCGAATACatataaaaagaaacatgtTGCATT
TCACAATAAAAGTTTGTTCGTTGATGCTAATAATAGTATCGATTTGTCAT
ACAGCACCAACTATGAACCCTTCAACAACACATGAAGAAGccacaaccac
aacaacaacgacaataCCGCCTACAACAGCTGAATTAACGACCAAACACA
AGAAAGAGCCAGAACAGTCAACACCTACAACAACTACAACTATACCACCA
ACTATGACTGAGACGTCAACAAAACACAACGAACAGCCAGAACGACCAAC
ATCTACAAAAGCTACAACCACAACAACTACAACACCCACAACAACCACAC
CGCATACTGCTGAGGCATCAACAAAACATAAGAAAGAAACAGAACAACCA
ACAACTGTGACCACACCAAATATGACTGAGACATCAACAAAACCCAACAA
AGCGCCAGAACAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTG
CTGAGACATCAACCAAACACAACGAAGGACCAGAACAGTCAACACCCTCA
AAAGCAACAACCACACCACCTACTGCTGAGATATCAACCAAACACAACGA
AGGACCAGAACAGTCAACACCCTCAAAAGCAACAACCACAACGCCAACTG
CTGAGACATCAACAAAACACAACGAAGGACCAGAACAGTCAACACCCTCA
AAAGCAACAACCACAACGCCAACTGCTGAGACATCAACAAAACACAAGAA
AGAACCGAAACAATCAACAACCACAACAACTGCAACGCAATCTACTACCA
AAACAACAACATCTTCCCCAAGTTTTGAAATAGATTGTCAATTCCAAGAT
GGTTCATCTTTCAAATCTGGTGATATCATATCTCAACATTATCATCCTGT
TACCAAAAAACTATGCTTCAAAGTTTATTGTGGTAACTTGGGCTCTATCA
AATCCCAAAACTTCGATTGTGAAGATGAGAAAATAACAGAAACGACCCCA
ACAACGACCACCAAAGGTTCGGATGTCCAAGGCTCTGGCAAGAGAGGATC
ATCTTCATCAAAAACAACTGAAAATCCTTTACGTAGGAAACATACTGCAT
CAATCACATTCAATATTTTGTTAGCCCTCCTGATTATCATCCTACTTGTT
GCTTTCATATCAACTTATCGTAAATATAAAAAGACATTTCATTTGAATGC
TTTTCACACTAAACGGGACACAGATATTCAGCTTGAAAGTGCTTACTCAA
ATTCGATGGACGATTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041977XLOC_041977Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067193-proteinTCONS_00067193-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067193-exon-scaffold_466-1491911889:269530..270253TCONS_00067193-exon-scaffold_466-1491911889:269530..270253Clytia hemisphaericaexon
TCONS_00067193-exon-scaffold_466-1510915933:269530..270253TCONS_00067193-exon-scaffold_466-1510915933:269530..270253Clytia hemisphaericaexon
TCONS_00067193-exon-scaffold_466-1575043694:269530..270253TCONS_00067193-exon-scaffold_466-1575043694:269530..270253Clytia hemisphaericaexon
TCONS_00067193-exon-scaffold_466-1491911889:270413..271339TCONS_00067193-exon-scaffold_466-1491911889:270413..271339Clytia hemisphaericaexon
TCONS_00067193-exon-scaffold_466-1510915933:270413..271339TCONS_00067193-exon-scaffold_466-1510915933:270413..271339Clytia hemisphaericaexon
TCONS_00067193-exon-scaffold_466-1575043694:270413..271339TCONS_00067193-exon-scaffold_466-1575043694:270413..271339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:269530..271339 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221428	0.167944	0.0278569	0	7.66429	4.32602	0.474468	0.829158	1.38908	4.05755	0.124631	0.14747	28.6676	8.53044	14.222	59.0103	10.2506	40.663	1.59538	2.07996	0	0.104425	0	0.0769396	0.422645	0.565801	3.94709	1.56311	0.0273076	0.0862784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top