TCONS_00067183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067183
Unique NameTCONS_00067183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067183 ID=TCONS_00067183|Name=TCONS_00067183|organism=Clytia hemisphaerica|type=transcript|length=1986bp
GATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACACTA
AATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaacat
atttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGACC
AAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAAAC
AAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAAAT
TGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTTTA
CAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTTCA
AATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGTTG
CAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGAAT
GCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAATGT
TTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGACT
CAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGGGT
ATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAACTA
GTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCCAC
TAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttctttg
aagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATGTA
CATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGATAAGTCTATA
TGAGTCAGTGGAACTTCTGAAGTCATTTAATTTGGTGAATGTAATTAATT
TGAATGGTGCTGGATCGTCTACACTGGTGATTAACGATACTGTTGTCAAT
TATCCTGGTAACACTTgTTACAACGATGAAGGCCGATCAAATCTATGCGA
TACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTATCC
CTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGTAAA
TGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGgaaaaatgcT
GGAGAAGTGTTGTTGGCGTAATTATAACATAGTAATCTTCATGAGTGCGT
TGATAGGAGCCAGTGTGGTAATCAACGTTGTCTTATGTGATCTTTTCATG
TTATACCGATTCCGTTCGAAGGATATGACACAACCGAGGAGAAGACCCAA
AGACAGATTGAGGACGTACTTGAAGGAAACTTCAATCATTTCTGATGACG
AATCTACTGATATTTTAACTTCAGCTGAAAATTTACTGGCTACCACTTCT
TCTCTCTAGATTTTCTTCATTAAAACACTTCTTATTATACTGAGTCTaaa
tggtgataaaagagatttaagtttaaaaaaagaaaacttcattCGGAAAA
GGGGCTCAAGAAGGTTTTACTGTGTTTTTCTCTATATTTTACCTAGGAAA
GTGTCTGATTTTCTCATTATCTAAAGATATTTGGTGTCAGGTGAAAGGAC
TCCTTTAATAATCAGGCTAAAGTCAATTCCTTTAGCCATTTTCTTCACTT
AATTTTGTCGTCTCTGTGATTGTATTCTGCTCTCTGTACTATTCAAATCA
GTGATGACTGACAATGTTAATTAAccagaaatttttaattttaacaacac
tatagattttattttttaatttgaacaatttaaaaacaactaccttaagg
gaagaaatttttgcgagtagaaattttcgcggaatttagtCTCGCAAATG
AGCcaggggggtcatgcagttactaTGTGAACACTATGACACTTAGTACG
TTGTGGTTTaacaactaaaaaaaattaaaacagttACTCCAAAGTGGAGT
AAGTGCacattttttcccttttttgaaaaatttccc
Run BLAST on NCBI

transcript from alignment at scaffold_466:206915..211673+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067183 ID=TCONS_00067183|Name=TCONS_00067183|organism=Clytia hemisphaerica|type=transcript|length=4759bp|location=Sequence derived from alignment at scaffold_466:206915..211673+ (Clytia hemisphaerica)
GATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACACTA
AATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaacat
atttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGACC
AAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAAAC
AAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAAAT
TGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTTTA
CAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTTCA
AATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGTTG
CAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGAAT
GCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAATGT
TTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGACT
CAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGGGT
ATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAACTA
GTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCCAC
TAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttctttg
aagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATGTA
CATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGTAAATATGAAt
tacttttttgaatttattactTGTTTCTAATATAAcatttattaaaaatt
tcacAAGTCTCTAATATACATCTTTGACAAGATAATGCTAAAATTCATAA
TTCATAAAATGTAATTTGAAAATGATCCTTTCTTTTTGATATAGCACATA
TCTTTTTGAACTTTTATTTCGAATTCATATgttattactttattttttcc
agGATAAGTCTATATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTGGT
GAATGTAATTAATTTGAATGGTGCTGGATCGTCTACACTGGTGATTAACG
ATACTGTTGTCAATTATCCTGGTAACACTTggtataaaaaaagttataaa
gaaTCCTCACTCTAATTAAAAATTCGAATGAAGAATATCTGTCAAATATA
TACTTTGCTATTTCAAGCAGTAATTGAACCAACTAAGGTTCGACAGagta
taagaaaaacaaatggaTTTCGTTAATATCTTTATCTAACTTTCTATTTT
ATTGTATGTAAAACTTCAATGAACTTGACCACTGTCCTGCACTATCAcgc
ttcaatttttcaatatagTTACAACGATGAAGGCCGATCAAATCTATGCG
ATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTATC
CCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGTAA
ATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGGTAGGTTGG
AAACTAACTGAGATTAcattcaaaaatgagttttacGACTTTTTGGGGTG
TCTCAGGACAATTTTAACCGTGTCTatttttgtagatttatatttttcga
aaaattaaagtttttgatCATAAATATGATACCAAAGGACTACTTAAAAG
GTAGTCGATTCGGGCAGTatctaaattttaattttgtcaaatttattttc
aggaaaaatgcTGGAGAAGTGTTGTTGGTGAGTATTTAATTGTTCCGAAA
ACTCTCAAAGCTAGAATAAGAATACGTTGCGCTAgtagtgaaaaaagttt
gtttgtgTTGTCAAACTTTACTTACATTAGGCTACTCATTCTCTGCTCTA
ATCTGCTCAACGATCATTTCAGCTCAAGAAAAAATTGTGAGAACTTAGTA
CGTGATATTATGGTGTAAAAGGCCAGATGGGAAATTAATTTATCCCATTA
GCTGGGGGAGGTTTTGTTTNAATACTGATACAAGAAAGAACTCATCACAA
CTGGTACAACGTTTTACAAAGAAATTAACAAATAATACAGTTTACGGTCA
CAGAATACTTATTTCAAATGGGTACAAAGTGTTATCAGTTTTAGAACCTA
AAGAAGATGGTGGTTGCAGTAAACACCAAACTGCTACAGTCTATGAATCA
TCGAAACAAAGGGAATGCTTAGTTGCCATTAATGCTGGATTCTTCAATGA
AGACACTGGACAATGTTTTGGTAACATTATCAGTGATGGTGAACTAATCA
ATCAGTTTAGAGGACTCAAAAGCGTAAACTTCGGTATCCGTGACGATGGT
AGTATAGTGACTGGGTATTTGAAAGAAACAGATTTTAAGGAAATGAGGCA
TCCACTGTTACAACTAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAG
AAAATTATTTATCCACTAGTAAACAACATGAACAATGTAATTTAGATAac
ttacaaaatttctttgaagtgaGAACAGCAAGGACCTTTTTAGGGCACGA
CTCAAAAGGCAATGTACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGT
ATGGGTAAATATGAAttacttttttgaatttattactTGTTTCTAATATA
AcatttattaaaaatttcacAAGTCTCTAATATACATCTTTGACAAGATA
ATGCTAAAATTCATAATTCATAAAATGTAATTTGAAAATGATCCTTTCTT
TTTGATATAGCACATATCTTTTTGAACTTTTATTTCGAATTCATATgtta
ttactttattttttccagGATAAGTCTATATGAGTCAGTGGAACTTCTGA
AGTCATTTAATTTGGTGAATGTAATTAATTTGAATGGTGCTGGATCGTCT
ACACTGGTGATTAACGATACTGTTGTCAATTATCCTGGTAACACTTggta
taaaaaaagttataaagaaTCCTCACTCTAATTAAAAATTCGAATGAAGA
ATATCTGTCAAATATATACTTTCCTATTTCAAGCAGTAATTGAACCAACT
AAGGTTCGACAGagtataagaaaaacaaatggaTTTCGTTAATATCTCTA
TCTAACTTTCTATTTTATTGTATGTAAAACTTCAATGAACTTGACCACTG
TCCTGCACTATCAcgcttcaatttttcaatatagTTACAACGATGAAGGC
CGATCAAATCTATGCGATACGAAAGTCAGTACTATCCTCTGTGTACACAA
ACCAGATTCCTGTATCCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTT
TCAAAGGAAAGTGTAAATGTCACAATGACTGGTCTGGCAAAGATTGCGAA
TTCAATGGTAGGTTGGAAACTAACTGAGATTAcattcaaaaatgagtttt
acGACTTTTTGGGGTGTCTCAGTACAATTTTAACCGTGTCTatttttgta
gatttatatttttcgaaaaattaaagtttttgatCATAAATATGATACCA
AAGGACTACTTAAAAGGTAGTCGATTCGGGCAGTatctaaattttaattt
tgtcaaatttattttcaggaaaaatgcTGGAGAAGTGTTGTTGGTGAGTA
TTTAATTGTTCCGAAAACTCTCAAAGCTAGAATAAGAATACGTTGCGCTA
gtagtgaaaaaagtttgtttgtgTTGTCAAACTTTACTTACATTAGGCTA
CTCATTCTCTGCTCTAATCTGCTCAACGATCATTTCAGCTCAAGAAAAAA
TTGTGAGAACTTAGTACGTGATATTATGGTGTAAAAGGCCAGATGGGAAA
TTAATTTATCCCATTAGCTGGGGGAGGTTTtgtttgaatattgaatatcc
tcattttgatgcttgaaaaATGTTCTCTTTCTTTTTAGGCGTAATTATAA
CATAGTAATCTTCATGAGTGCGTTGATAGGAGCCAGTGTGGTAATCAACG
TTGTCTTATGTGATCTTTTCATGTTATACCGATTCCGTTCGAAGGATATG
ACACAACCGAGGAGAAGACCCAAAGACAGATTGAGGACGTACTTGAAGGA
AACTTCAATCATTTCTGATGACGAATCTACTGATATTTTAACTTCAGCTG
AAAATTTACTGGCTACCACTTCTTCTCTCTAGATTTTCTTCATTAAAACA
CTTCTTATTATACTGAGTCTaaatggtgataaaagagatttaagtttaaa
aaaagaaaacttcattCGGAAAAGGGGCTCAAGAAGGTTTTACTGTGTTT
TTCTCTATATTTTACCTAGGAAAGTGTCTGATTTTCTCATTATCTAAAGA
TATTTGGTGTCAGGTGAAAGGACTCCTTTAATAATCAGGCTAAAGTCAAT
TCCTTTAGCCATTTTCTTCACTTAATTTTGTCGTCTCTGTGATTGTATTC
TGCTCTCTGTACTATTCAAATCAGTGATGACTGACAATGTTAATTAAcca
gaaatttttaattttaacaacactatagattttattttttaatttgaaca
atttaaaaacaactaccttaagggaagaaatttttgcgagtagaaatttt
cgcggaatttagtCTCGCAAATGAGCcaggggggtcatgcagttactaTG
TGAACACTATGACACTTAGTACGTTGTGGTTTaacaactaaaaaaaatta
aaacagttACTCCAAAGTGGAGTAAGTGCacattttttcccttttttgaa
aaatttccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041973XLOC_041973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067183-exon-scaffold_466-1491911889:206915..207752TCONS_00067183-exon-scaffold_466-1491911889:206915..207752Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1510915933:206915..207752TCONS_00067183-exon-scaffold_466-1510915933:206915..207752Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1575043694:206915..207752TCONS_00067183-exon-scaffold_466-1575043694:206915..207752Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1491911889:207967..208095TCONS_00067183-exon-scaffold_466-1491911889:207967..208095Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1510915933:207967..208095TCONS_00067183-exon-scaffold_466-1510915933:207967..208095Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1575043694:207967..208095TCONS_00067183-exon-scaffold_466-1575043694:207967..208095Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1491911889:208333..208505TCONS_00067183-exon-scaffold_466-1491911889:208333..208505Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1510915933:208333..208505TCONS_00067183-exon-scaffold_466-1510915933:208333..208505Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1575043694:208333..208505TCONS_00067183-exon-scaffold_466-1575043694:208333..208505Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1491911889:210533..210557TCONS_00067183-exon-scaffold_466-1491911889:210533..210557Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1510915933:210533..210557TCONS_00067183-exon-scaffold_466-1510915933:210533..210557Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1575043694:210533..210557TCONS_00067183-exon-scaffold_466-1575043694:210533..210557Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1491911889:210853..211673TCONS_00067183-exon-scaffold_466-1491911889:210853..211673Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1510915933:210853..211673TCONS_00067183-exon-scaffold_466-1510915933:210853..211673Clytia hemisphaericaexon
TCONS_00067183-exon-scaffold_466-1575043694:210853..211673TCONS_00067183-exon-scaffold_466-1575043694:210853..211673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:206915..211673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0748056	0.00682071	1.3499	1.7839	3.22421e-07	0.000935104	0.00673995	0.00549923	4.48427	0.574478	0.000396548	3.73087	0.203677	2.33414	0.121149	0.0110666	0.454067	3.46981	2.38721	0.608422	0.144882	3.07537	2.12077	1.88151	0.338824	9.49418e-05	4.3901	0.122491	0.619424	4.93472
Blast
[Close]
BLAST of TCONS_00067183 vs. Swiss-Prot (Human)
Match: NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGPA PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.225e-61
Identity = 111/287 (38.68%), Postives = 168/287 (58.54%), Query Frame = 3 
Query:  288 VQRFTKKLTNNTVYGHRILISNGYKVLSVLEPKEDGGCSKHQTATVYESSKQRECLVAINAGFFNEDTGQCFGNIISDGELINQFRGLKSVNFGIRDDGSIVTGYLKETDFKEMRHPLLQLVTGVGWILRRGENYLSTSKQHEQCN----LDNLQNFFEVRTARTFLGHDSKGNVHIVQVEGKTGLYGISLYESVELLKSFNLVNVINLNGAGSSTLVINDTVVNYPGNTCYNDEGRSNLCDTKVSTILCVHKPDSCIPGQSCSGRGTCFKGKCKCHND-WSGKDCE 1133
            V+ F     +  V GH        +  SVLEP   GGC+  + ATV E+++  +C VA N GFF  ++G+C GN++SD   ++   GL++  FGIR DG++VTGYL E +  +  +P +QL++GV W++R G  Y++ S Q  +C+      +   F  V +ART +GHD KG + +   +G+T   GI+L+E  E L   ++VN INL+G GS+T V+N T+ +YP + C ++  R   C  +VST++CVH+P  C P   C G GTC  G C+C    W G  C+
Sbjct:   78 VRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFFRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINES-QATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWR---CPRQVSTVVCVHEP-RCQP-PDCHGHGTCVDGHCQCTGHFWRGPGCD 358
The following BLAST results are available for this feature:
BLAST of TCONS_00067183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGPA5.225e-6138.68N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
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