TCONS_00067180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067180
Unique NameTCONS_00067180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067180 ID=TCONS_00067180|Name=TCONS_00067180|organism=Clytia hemisphaerica|type=transcript|length=1988bp
CAGATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACAC
TAAATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaac
atatttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGA
CCAAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAA
ACAAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAA
ATTGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTT
TACAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTT
CAAATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGT
TGCAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGA
ATGCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAAT
GTTTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGA
CTCAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGG
GTATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAAC
TAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCC
ACTAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttctt
tgaagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATG
TACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGATAAGTCTA
TATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTGGTGAATGTAATTAA
TTTGAATGGTGCTGGATCGTCTACACTGGTGATTAACGATACTGTTGTCA
ATTATCCTGGTAACACTTgTTACAACGATGAAGGCCGATCAAATCTATGC
GATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTAT
CCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGTA
AATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGgaaaaatg
cTGGAGAAGTGTTGTTGGCGTAATTATAACATAGTAATCTTCATGAGTGC
GTTGATAGGAGCCAGTGTGGTAATCAACGTTGTCTTATGTGATCTTTTCA
TGTTATACCGATTCCGTTCGAAGGATATGACACAACCGAGGAGAAGACCC
AAAGACAGATTGAGGACGTACTTGAAGGAAACTTCAATCATTTCTGATGA
CGAATCTACTGATATTTTAACTTCAGCTGAAAATTTACTGGCTACCACTT
CTTCTCTCTAGATTTTCTTCATTAAAACACTTCTTATTATACTGAGTCTa
aatggtgataaaagagatttaagtttaaaaaaagaaaacttcattCGGAA
AAGGGGCTCAAGAAGGTTTTACTGTGTTTTTCTCTATATTTTACCTAGGA
AAGTGTCTGATTTTCTCATTATCTAAAGATATTTGGTGTCAGGTGAAAGG
ACTCCTTTAATAATCAGGCTAAAGTCAATTCCTTTAGCCATTTTCTTCAC
TTAATTTTGTCGTCTCTGTGATTGTATTCTGCTCTCTGTACTATTCAAAT
CAGTGATGACTGACAATGTTAATTAAccagaaatttttaattttaacaac
actatagattttattttttaatttgaacaatttaaaaacaactaccttaa
gggaagaaatttttgcgagtagaaattttcgcggaatttagtCTCGCAAA
TGAGCcaggggggtcatgcagttactaTGTGAACACTATGACACTTAGTA
CGTTGTGGTTTaacaactaaaaaaaattaaaacagttACTCCAAAGTGGA
GTAAGTGCacattttttcccttttttgaaaaatttccc
Run BLAST on NCBI

transcript from alignment at scaffold_466:206913..211673+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067180 ID=TCONS_00067180|Name=TCONS_00067180|organism=Clytia hemisphaerica|type=transcript|length=4761bp|location=Sequence derived from alignment at scaffold_466:206913..211673+ (Clytia hemisphaerica)
CAGATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACAC
TAAATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaac
atatttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGA
CCAAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAA
ACAAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAA
ATTGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTT
TACAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTT
CAAATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGT
TGCAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGA
ATGCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAAT
GTTTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGA
CTCAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGG
GTATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAAC
TAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCC
ACTAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttctt
tgaagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATG
TACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGTAAATATGA
AttacttttttgaatttattactTGTTTCTAATATAAcatttattaaaaa
tttcacAAGTCTCTAATATACATCTTTGACAAGATAATGCTAAAATTCAT
AATTCATAAAATGTAATTTGAAAATGATCCTTTCTTTTTGATATAGCACA
TATCTTTTTGAACTTTTATTTCGAATTCATATgttattactttatttttt
ccagGATAAGTCTATATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTG
GTGAATGTAATTAATTTGAATGGTGCTGGATCGTCTACACTGGTGATTAA
CGATACTGTTGTCAATTATCCTGGTAACACTTggtataaaaaaagttata
aagaaTCCTCACTCTAATTAAAAATTCGAATGAAGAATATCTGTCAAATA
TATACTTTGCTATTTCAAGCAGTAATTGAACCAACTAAGGTTCGACAGag
tataagaaaaacaaatggaTTTCGTTAATATCTTTATCTAACTTTCTATT
TTATTGTATGTAAAACTTCAATGAACTTGACCACTGTCCTGCACTATCAc
gcttcaatttttcaatatagTTACAACGATGAAGGCCGATCAAATCTATG
CGATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTA
TCCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGT
AAATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGGTAGGTT
GGAAACTAACTGAGATTAcattcaaaaatgagttttacGACTTTTTGGGG
TGTCTCAGGACAATTTTAACCGTGTCTatttttgtagatttatatttttc
gaaaaattaaagtttttgatCATAAATATGATACCAAAGGACTACTTAAA
AGGTAGTCGATTCGGGCAGTatctaaattttaattttgtcaaatttattt
tcaggaaaaatgcTGGAGAAGTGTTGTTGGTGAGTATTTAATTGTTCCGA
AAACTCTCAAAGCTAGAATAAGAATACGTTGCGCTAgtagtgaaaaaagt
ttgtttgtgTTGTCAAACTTTACTTACATTAGGCTACTCATTCTCTGCTC
TAATCTGCTCAACGATCATTTCAGCTCAAGAAAAAATTGTGAGAACTTAG
TACGTGATATTATGGTGTAAAAGGCCAGATGGGAAATTAATTTATCCCAT
TAGCTGGGGGAGGTTTTGTTTNAATACTGATACAAGAAAGAACTCATCAC
AACTGGTACAACGTTTTACAAAGAAATTAACAAATAATACAGTTTACGGT
CACAGAATACTTATTTCAAATGGGTACAAAGTGTTATCAGTTTTAGAACC
TAAAGAAGATGGTGGTTGCAGTAAACACCAAACTGCTACAGTCTATGAAT
CATCGAAACAAAGGGAATGCTTAGTTGCCATTAATGCTGGATTCTTCAAT
GAAGACACTGGACAATGTTTTGGTAACATTATCAGTGATGGTGAACTAAT
CAATCAGTTTAGAGGACTCAAAAGCGTAAACTTCGGTATCCGTGACGATG
GTAGTATAGTGACTGGGTATTTGAAAGAAACAGATTTTAAGGAAATGAGG
CATCCACTGTTACAACTAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGG
AGAAAATTATTTATCCACTAGTAAACAACATGAACAATGTAATTTAGATA
acttacaaaatttctttgaagtgaGAACAGCAAGGACCTTTTTAGGGCAC
GACTCAAAAGGCAATGTACATATTGTGCAGGTCGAAGGCAAAACTGGTTT
GTATGGGTAAATATGAAttacttttttgaatttattactTGTTTCTAATA
TAAcatttattaaaaatttcacAAGTCTCTAATATACATCTTTGACAAGA
TAATGCTAAAATTCATAATTCATAAAATGTAATTTGAAAATGATCCTTTC
TTTTTGATATAGCACATATCTTTTTGAACTTTTATTTCGAATTCATATgt
tattactttattttttccagGATAAGTCTATATGAGTCAGTGGAACTTCT
GAAGTCATTTAATTTGGTGAATGTAATTAATTTGAATGGTGCTGGATCGT
CTACACTGGTGATTAACGATACTGTTGTCAATTATCCTGGTAACACTTgg
tataaaaaaagttataaagaaTCCTCACTCTAATTAAAAATTCGAATGAA
GAATATCTGTCAAATATATACTTTCCTATTTCAAGCAGTAATTGAACCAA
CTAAGGTTCGACAGagtataagaaaaacaaatggaTTTCGTTAATATCTC
TATCTAACTTTCTATTTTATTGTATGTAAAACTTCAATGAACTTGACCAC
TGTCCTGCACTATCAcgcttcaatttttcaatatagTTACAACGATGAAG
GCCGATCAAATCTATGCGATACGAAAGTCAGTACTATCCTCTGTGTACAC
AAACCAGATTCCTGTATCCCTGGACAGTCTTGTTCAGGAAGAGGAACCTG
TTTCAAAGGAAAGTGTAAATGTCACAATGACTGGTCTGGCAAAGATTGCG
AATTCAATGGTAGGTTGGAAACTAACTGAGATTAcattcaaaaatgagtt
ttacGACTTTTTGGGGTGTCTCAGTACAATTTTAACCGTGTCTatttttg
tagatttatatttttcgaaaaattaaagtttttgatCATAAATATGATAC
CAAAGGACTACTTAAAAGGTAGTCGATTCGGGCAGTatctaaattttaat
tttgtcaaatttattttcaggaaaaatgcTGGAGAAGTGTTGTTGGTGAG
TATTTAATTGTTCCGAAAACTCTCAAAGCTAGAATAAGAATACGTTGCGC
TAgtagtgaaaaaagtttgtttgtgTTGTCAAACTTTACTTACATTAGGC
TACTCATTCTCTGCTCTAATCTGCTCAACGATCATTTCAGCTCAAGAAAA
AATTGTGAGAACTTAGTACGTGATATTATGGTGTAAAAGGCCAGATGGGA
AATTAATTTATCCCATTAGCTGGGGGAGGTTTtgtttgaatattgaatat
cctcattttgatgcttgaaaaATGTTCTCTTTCTTTTTAGGCGTAATTAT
AACATAGTAATCTTCATGAGTGCGTTGATAGGAGCCAGTGTGGTAATCAA
CGTTGTCTTATGTGATCTTTTCATGTTATACCGATTCCGTTCGAAGGATA
TGACACAACCGAGGAGAAGACCCAAAGACAGATTGAGGACGTACTTGAAG
GAAACTTCAATCATTTCTGATGACGAATCTACTGATATTTTAACTTCAGC
TGAAAATTTACTGGCTACCACTTCTTCTCTCTAGATTTTCTTCATTAAAA
CACTTCTTATTATACTGAGTCTaaatggtgataaaagagatttaagttta
aaaaaagaaaacttcattCGGAAAAGGGGCTCAAGAAGGTTTTACTGTGT
TTTTCTCTATATTTTACCTAGGAAAGTGTCTGATTTTCTCATTATCTAAA
GATATTTGGTGTCAGGTGAAAGGACTCCTTTAATAATCAGGCTAAAGTCA
ATTCCTTTAGCCATTTTCTTCACTTAATTTTGTCGTCTCTGTGATTGTAT
TCTGCTCTCTGTACTATTCAAATCAGTGATGACTGACAATGTTAATTAAc
cagaaatttttaattttaacaacactatagattttattttttaatttgaa
caatttaaaaacaactaccttaagggaagaaatttttgcgagtagaaatt
ttcgcggaatttagtCTCGCAAATGAGCcaggggggtcatgcagttacta
TGTGAACACTATGACACTTAGTACGTTGTGGTTTaacaactaaaaaaaat
taaaacagttACTCCAAAGTGGAGTAAGTGCacattttttcccttttttg
aaaaatttccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041973XLOC_041973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067180-exon-scaffold_466-1491911889:206913..207752TCONS_00067180-exon-scaffold_466-1491911889:206913..207752Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1510915933:206913..207752TCONS_00067180-exon-scaffold_466-1510915933:206913..207752Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1575043694:206913..207752TCONS_00067180-exon-scaffold_466-1575043694:206913..207752Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1491911889:209783..209911TCONS_00067180-exon-scaffold_466-1491911889:209783..209911Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1510915933:209783..209911TCONS_00067180-exon-scaffold_466-1510915933:209783..209911Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1575043694:209783..209911TCONS_00067180-exon-scaffold_466-1575043694:209783..209911Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1491911889:210149..210321TCONS_00067180-exon-scaffold_466-1491911889:210149..210321Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1510915933:210149..210321TCONS_00067180-exon-scaffold_466-1510915933:210149..210321Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1575043694:210149..210321TCONS_00067180-exon-scaffold_466-1575043694:210149..210321Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1491911889:210533..210557TCONS_00067180-exon-scaffold_466-1491911889:210533..210557Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1510915933:210533..210557TCONS_00067180-exon-scaffold_466-1510915933:210533..210557Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1575043694:210533..210557TCONS_00067180-exon-scaffold_466-1575043694:210533..210557Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1491911889:210853..211673TCONS_00067180-exon-scaffold_466-1491911889:210853..211673Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1510915933:210853..211673TCONS_00067180-exon-scaffold_466-1510915933:210853..211673Clytia hemisphaericaexon
TCONS_00067180-exon-scaffold_466-1575043694:210853..211673TCONS_00067180-exon-scaffold_466-1575043694:210853..211673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:206913..211673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61047	1.89787	13.4127	17.1611	6.50773	4.96255	9.7744	8.95832	0.839067	4.25974	3.68942	0.903206	2.49058	0.387657	2.76792	2.53509	3.22285	0.716803	0.597081	2.73433	5.87682	0.733706	3.80357	3.4006	7.22226	5.65538	0.939103	2.39934	4.68543	1.33989
Blast
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BLAST of TCONS_00067180 vs. Swiss-Prot (Human)
Match: NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGPA PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.303e-61
Identity = 111/287 (38.68%), Postives = 168/287 (58.54%), Query Frame = 2 
Query:  290 VQRFTKKLTNNTVYGHRILISNGYKVLSVLEPKEDGGCSKHQTATVYESSKQRECLVAINAGFFNEDTGQCFGNIISDGELINQFRGLKSVNFGIRDDGSIVTGYLKETDFKEMRHPLLQLVTGVGWILRRGENYLSTSKQHEQCN----LDNLQNFFEVRTARTFLGHDSKGNVHIVQVEGKTGLYGISLYESVELLKSFNLVNVINLNGAGSSTLVINDTVVNYPGNTCYNDEGRSNLCDTKVSTILCVHKPDSCIPGQSCSGRGTCFKGKCKCHND-WSGKDCE 1135
            V+ F     +  V GH        +  SVLEP   GGC+  + ATV E+++  +C VA N GFF  ++G+C GN++SD   ++   GL++  FGIR DG++VTGYL E +  +  +P +QL++GV W++R G  Y++ S Q  +C+      +   F  V +ART +GHD KG + +   +G+T   GI+L+E  E L   ++VN INL+G GS+T V+N T+ +YP + C ++  R   C  +VST++CVH+P  C P   C G GTC  G C+C    W G  C+
Sbjct:   78 VRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFFRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINES-QATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWR---CPRQVSTVVCVHEP-RCQP-PDCHGHGTCVDGHCQCTGHFWRGPGCD 358
The following BLAST results are available for this feature:
BLAST of TCONS_00067180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGPA5.303e-6138.68N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
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