TCONS_00067174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067174
Unique NameTCONS_00067174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067174 ID=TCONS_00067174|Name=TCONS_00067174|organism=Clytia hemisphaerica|type=transcript|length=283bp
ATTGGTTCAAGACAGTCaagaaaagacaaaagagaTGATTTCGGAATTAG
AAAATACGGTAACAGAACTCttgttgaaagttgaagaactggagaaaaag
ttgaatgaaaAGGACACTGTgtcaaaagaaaagcaaaaagtatCCATATA
AACAGATTTACAGACTAGAGTACATGCTTACATACATGCCAAAGAAGACT
CTCCAGTTGAAAAAAGTTGGAACTTTGAAAAGTGTTTTGACAAAGAGGAA
AATATTGGTTTTGCTTCAGAAATGATCGAACAC
Run BLAST on NCBI

transcript from alignment at scaffold_466:51821..52341+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067174 ID=TCONS_00067174|Name=TCONS_00067174|organism=Clytia hemisphaerica|type=transcript|length=521bp|location=Sequence derived from alignment at scaffold_466:51821..52341+ (Clytia hemisphaerica)
ATTGGTTCAAGACAGTCaagaaaagacaaaagagaTGATTTCGGAATTAG
AAAATACGGTAACAGAACTCttgttgaaagttgaagaactggagaaaaag
ttgaatgaaaAGGACACTGTgtcaaaagaaaagcaaaaagtatCCATATA
AACAGATTTACAGGTACATaccctttttcaatttttaactttactctgag
ggaacttattttggcgagaaacTAAAAGTGAACATTTTGCTTCGGCGTAG
AACATTCTTTATAATTTTGGTAGAAGATGAAAATTAGTGTCTCAGGGTTC
ATTTGGATATATACGAGATTTACCAAAGCggtaataaattttattttcga
taGAAATTTGGGTTTGGTTAAGATTCATTGGCACCCCCTCTTTCTTTTTA
GACTAGAGTACATGCTTACATACATGCCAAAGAAGACTCTCCAGTTGAAA
AAAGTTGGAACTTTGAAAAGTGTTTTGACAAAGAGGAAAATATTGGTTTT
GCTTCAGAAATGATCGAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041970XLOC_041970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067174-exon-scaffold_466-1491911889:51821..51983TCONS_00067174-exon-scaffold_466-1491911889:51821..51983Clytia hemisphaericaexon
TCONS_00067174-exon-scaffold_466-1510915933:51821..51983TCONS_00067174-exon-scaffold_466-1510915933:51821..51983Clytia hemisphaericaexon
TCONS_00067174-exon-scaffold_466-1575043694:51821..51983TCONS_00067174-exon-scaffold_466-1575043694:51821..51983Clytia hemisphaericaexon
TCONS_00067174-exon-scaffold_466-1491911889:52222..52341TCONS_00067174-exon-scaffold_466-1491911889:52222..52341Clytia hemisphaericaexon
TCONS_00067174-exon-scaffold_466-1510915933:52222..52341TCONS_00067174-exon-scaffold_466-1510915933:52222..52341Clytia hemisphaericaexon
TCONS_00067174-exon-scaffold_466-1575043694:52222..52341TCONS_00067174-exon-scaffold_466-1575043694:52222..52341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:51821..52341 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.463763	0.538473	0	0.641343	0	0	0	2.0038	0.992812	1.9273	2.85059	0.632584	0.656944	3.24058	1.15921	2.4991	2.92743	0	0.529021	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top