TCONS_00067173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067173
Unique NameTCONS_00067173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067173 ID=TCONS_00067173|Name=TCONS_00067173|organism=Clytia hemisphaerica|type=transcript|length=200bp
TTCAAAACAGTCaagaaaagacaaaagagaTGATTTCGGAATTAGAAAAT
ACGGTAACAGAACTCttgttgaaagttgataaaatggagaaaaagttgaa
tgaaaAGGACACTGTgtcaaaagaaaagcaaaaagtatCCATATCAACAG
ATTTACAGACTAGAGTACATGCTTACATACATGCCAAAGAAGACTCTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_466:50459..50896+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067173 ID=TCONS_00067173|Name=TCONS_00067173|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at scaffold_466:50459..50896+ (Clytia hemisphaerica)
TTCAAAACAGTCaagaaaagacaaaagagaTGATTTCGGAATTAGAAAAT
ACGGTAACAGAACTCttgttgaaagttgataaaatggagaaaaagttgaa
tgaaaAGGACACTGTgtcaaaagaaaagcaaaaagtatCCATATCAACAG
ATTTACAGGTACATaccctttttcaatttttaactttactctgagggaac
ttattttggcgagaaacTAAAAGTGAACATTTTGCTTCGGCGTAGAACAT
TCTTTATAATTTTGGTAGAAGATGAAAATTAGTGTCTCAGGGTTCATTTG
GATATATACGAGATTTACCAAAGCggtaataaattttattttcgataGAA
ATTTGGGTTTGGTTAAGATTCATTGGCACCCCCTCTTTCTTTTTAGACTA
GAGTACATGCTTACATACATGCCAAAGAAGACTCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041969XLOC_041969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067173-exon-scaffold_466-1491911889:50459..50616TCONS_00067173-exon-scaffold_466-1491911889:50459..50616Clytia hemisphaericaexon
TCONS_00067173-exon-scaffold_466-1510915933:50459..50616TCONS_00067173-exon-scaffold_466-1510915933:50459..50616Clytia hemisphaericaexon
TCONS_00067173-exon-scaffold_466-1575043694:50459..50616TCONS_00067173-exon-scaffold_466-1575043694:50459..50616Clytia hemisphaericaexon
TCONS_00067173-exon-scaffold_466-1491911889:50855..50896TCONS_00067173-exon-scaffold_466-1491911889:50855..50896Clytia hemisphaericaexon
TCONS_00067173-exon-scaffold_466-1510915933:50855..50896TCONS_00067173-exon-scaffold_466-1510915933:50855..50896Clytia hemisphaericaexon
TCONS_00067173-exon-scaffold_466-1575043694:50855..50896TCONS_00067173-exon-scaffold_466-1575043694:50855..50896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:50459..50896 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.62456	0	0	4.49323	8.87653	0	4.01031	7.01929	10.4334	1.68782	5.54754	1.10797	0	5.67586	6.09107	6.25308	7.69105	1.77093	1.85315	0	0	0	3.47318	1.78865	1.59633	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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