TCONS_00067172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067172
Unique NameTCONS_00067172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067172 ID=TCONS_00067172|Name=TCONS_00067172|organism=Clytia hemisphaerica|type=transcript|length=666bp
AACGTTAGCTTGACTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGA
CTTGACAGCTCGAAGTTGAGGTGTGAATAGAGCCTAACCAACAAGCTCTC
TGTTGATATGTTGACTTGACAGCTAGAGTCGGAGCGGTCTGTACCAAGGT
AACGTTAGCTTGACTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGC
CTTGACAGCTCGAAGTCGAGGTGTGAATAGAGCCTAACCAACAAGCTCTC
TGTTGATGTGTTGACTTGACAGCTAGAGTCGAAGCAGTTGTACCGACGTG
CAAGCAGCGGTCTGTACCAAGGTAACGTTAGCTTGACTCGAACTGAAAAC
ACCGGATTGTTTCCAGTTGTTGACTTGACAGCTCGAAGTTGAGGTGTGAA
TAGAGCCTAACCAACAAGCTCTCTGTTGATGTGTTGACTTGACAGCTAGA
GTTGAAGCAGTTGTACCGACGTGCAAGCAGCGGTCTGTACCAAGGTAACG
TTAGCTTGACTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGACTTG
ACAGCTCGAAGTTGAGGTGTGAACAGAGCCTTGCCAATGAAGCTCAGATG
AGGTTGACGACTTGACGTGGATAggcagcgtcgaagcagttgagttgacg
atgtgacgtttgacag
Run BLAST on NCBI

transcript from alignment at scaffold_466:44384..45049+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067172 ID=TCONS_00067172|Name=TCONS_00067172|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at scaffold_466:44384..45049+ (Clytia hemisphaerica)
AACGTTAGCTTGACTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGA
CTTGACAGCTCGAAGTTGAGGTGTGAATAGAGCCTAACCAACAAGCTCTC
TGTTGATATGTTGACTTGACAGCTAGAGTCGGAGCGGTCTGTACCAAGGT
AACGTTAGCTTGACTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGC
CTTGACAGCTCGAAGTCGAGGTGTGAATAGAGCCTAACCAACAAGCTCTC
TGTTGATGTGTTGACTTGACAGCTAGAGTCGAAGCAGTTGTACCGACGTG
CAAGCAGCGGTCTGTACCAAGGTAACGTTAGCTTGACTCGAACTGAAAAC
ACCGGATTGTTTCCAGTTGTTGACTTGACAGCTCGAAGTTGAGGTGTGAA
TAGAGCCTAACCAACAAGCTCTCTGTTGATGTGTTGACTTGACAGCTAGA
GTTGAAGCAGTTGTACCGACGTGCAAGCAGCGGTCTGTACCAAGGTAACG
TTAGCTTGACTCGAACTGAAAACACCAGATTGTTTCCAGTTGTTGACTTG
ACAGCTCGAAGTTGAGGTGTGAACAGAGCCTTGCCAATGAAGCTCAGATG
AGGTTGACGACTTGACGTGGATAggcagcgtcgaagcagttgagttgacg
atgtgacgtttgacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041968XLOC_041968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067172-exon-scaffold_466-1491911889:44384..45049TCONS_00067172-exon-scaffold_466-1491911889:44384..45049Clytia hemisphaericaexon
TCONS_00067172-exon-scaffold_466-1510915933:44384..45049TCONS_00067172-exon-scaffold_466-1510915933:44384..45049Clytia hemisphaericaexon
TCONS_00067172-exon-scaffold_466-1575043694:44384..45049TCONS_00067172-exon-scaffold_466-1575043694:44384..45049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:44384..45049 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.529923	0.170593	0.17199	0.104691	0.191018	0.364591	0.122549	0.255187	0.893305	0.51566	0	0.364701	0.808131	0	0.103951	0	0.0770012	0.292347	0.469755	0.383857	0.38909	0.157411	0.806529	1.31436	0.625952	0	0.22721	0.848641	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top