TCONS_00067161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067161
Unique NameTCONS_00067161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067161 ID=TCONS_00067161|Name=TCONS_00067161|organism=Clytia hemisphaerica|type=transcript|length=242bp
AGGGGCATGAAAGTGAGGCTAAATCAAGAGTCCGGATTaagaccaaaaca
aaccaattgcaTCTAAACCCTGATATACAAAAACATATATCAGACACTTA
AACACAAAAGGCTATAGGCAAGGATAGGCAGAAAGCACACAGATATGtct
acatggtattttcagttcttgacgGAATAAACACTGTGAAAacggcacag
acaaaatatgtacaggaatataaactaggaaaataaaacaaa
Run BLAST on NCBI

transcript from alignment at scaffold_464:25166..25407

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067161 ID=TCONS_00067161|Name=TCONS_00067161|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at scaffold_464:25166..25407 (Clytia hemisphaerica)
tttgttttattttcctagtttatattcctgtacatattttgtctgtgccg
tTTTCACAGTGTTTATTCcgtcaagaactgaaaataccatgtagaCATAT
CTGTGTGCTTTCTGCCTATCCTTGCCTATAGCCTTTTGTGTTTAAGTGTC
TGATATATGTTTTTGTATATCAGGGTTTAGAtgcaattggtttgttttgg
tcttAATCCGGACTCTTGATTTAGCCTCACTTTCATGCCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041958XLOC_041958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067161-exon-scaffold_464-1491911889:25166..25407TCONS_00067161-exon-scaffold_464-1491911889:25166..25407Clytia hemisphaericaexon
TCONS_00067161-exon-scaffold_464-1510915933:25166..25407TCONS_00067161-exon-scaffold_464-1510915933:25166..25407Clytia hemisphaericaexon
TCONS_00067161-exon-scaffold_464-1575043694:25166..25407TCONS_00067161-exon-scaffold_464-1575043694:25166..25407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:25166..25407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74197	0.849349	1.97235	0.964818	9.39659	7.42531	7.83853	14.6767	3.66982	1.81826	1.76485	5.80072	4.05486	5.41416	0.494575	2.12302	4.57692	4.02103	0	0.968864	3.36848	6.16134	3.99462	2.81352	3.74056	6.67672	1.19429	0	2.01024	1.96988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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