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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067151 ID=TCONS_00067151|Name=TCONS_00067151|organism=Clytia hemisphaerica|type=transcript|length=1339bp
CGTAAATGTGCTTCAACAATCTTTAGCTTTTTAAGAGGGGTGGGTGAGGC
ACTTTTTTAAAGTCCGGTGTGGGGGTGGGGGTAGTCAAGGTAAGTTATCT
ACCCTATGTAGATGCGACCTTTAAGGGTCAGTTCAGTCAGCATTAAAGAG
CTGATAAtgcacagggaacgaggttggtggATCTGGTTACGAGATTGGAT
AACTTTTGCAGACTTTCCTGAaatagtttcaaaatttcttttcatatttA
GCAATATACTGGGAAGTTTTTCGCAATGAATATCAACAACTTAACATCCC
CGAATTTCCGAACTCATCATTTTGTCGATTTACGCGCAGGAAGACCTGCT
CGATTCAATCACGTTGCAAGAGCAAGAGCCATCCACCAAGCACGAAACTC
AGCCAAAAACACTGTTGTCTTTATTGAAGATGAGGGACAATTACAAGACT
TGTTCCAAGAAATCCAGACAgGAATTAAACAGTTGGCACAATTTCCGTCC
ACCGCTAATGCCGTTGCCGATAAGAAAGCCAACCTGCTTTCTAACAAGCA
ATTTCTGTGCATCACAACAAACCAAGATGGTTCCATTGATAAAGCTTTGG
GTCGACAAAGAGTCTATCTTGGTTTCACAGCAAATTCAGTTTTGAACCAT
TTGGCTATGACAGTTAACTAAATTATGACGTAAATAAACTTCTTAAAAGA
CTTTCGTCAAGATGGTGTATAATGTAAAAATACACATTGAATATAAAAAT
CACTAGCCTGCATCATATCAAGCCTGTAAACTTAGTTTCATATCTTTTCT
ATagaagaaccagtaaatttttgatgagaatTTTTTTGCACATTTAGCCT
AATATTGTTTTTACCCTGTTCCTTATTTCTAGTGCAAAATTGAAGTATTC
TAGGTTTGGTActcttttttaattaaatttaacTCCAATTTAACTCATAA
TTCGCGTACAATTTAGCCATTCTGGTCTCAGCATTGTTTATaaattcttc
ttatttttgtcatttaaagctttgtaattttttttcatatgttATAATTG
ATGATTCTGAAAAGATGAAACAAACACAGTAGTCCTTaaattcaaattct
tattttcGGTTGTTTATCATATAGGATCAAAGCTCGATCTCTTCAAAGTC
TGTATGTTTCTACGGTCATCACTATTCATGACCACAAGGCATCCAGCAGA
CCGATGAATTAAGAAATCAAAACTAAAGTGAAACTAAGAATGTAtttaca
ataaataaaaaataataaaatttatgaATTAATTATTAATTTCAAAAGAA
ACGATTTATATAAACAAAGCCACAAAAAGTAAAGTTAAA Run BLAST on NCBI protein sequence of TCONS_00067151-protein >TCONS_00067151-protein ID=TCONS_00067151-protein|Name=TCONS_00067151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNINNLTSPNFRTHHFVDLRAGRPARFNHVARARAIHQARNSAKNTVVFI
EDEGQLQDLFQEIQTGIKQLAQFPSTANAVADKKANLLSNKQFLCITTNQ
DGSIDKALGRQRVYLGFTANSVLNHLAMTVN Run BLAST on NCBI transcript from alignment at scaffold_464:236422..238589+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067151 ID=TCONS_00067151|Name=TCONS_00067151|organism=Clytia hemisphaerica|type=transcript|length=2168bp|location=Sequence derived from alignment at scaffold_464:236422..238589+ (Clytia hemisphaerica)
CGTAAATGTGCTTCAACAATCTTTAGCTTTTTAAGAGGGGTGGGTGAGGC
ACTTTTTTAAAGTCCGGTGTGGGGGTGGGGGTAGTCAAGGTAAGTTATCT
ACCCTATGTAGATGCGACCTTTAAGGGTCAGTTCAGTCAGCATTAAAGAG
CTGATAAtgcacagggaacgaggttggtggATCTGGTTACGAGATTGGAT
AACTTTTGCAGACTTTCCTGAaatagtttcaaaatttcttttcatatttA
GCAATATACTGGGAAGTTTTTCGCAATGAATATCAACAACTTAACATCCC
CGAATTTCCGAACTCATCATTTTGTCGATTTACGCGCAGGAAGACCTGCT
CGATTCAATCACGTTGCAAGAGCAAGAGCCATCCACCAAGCACGAAACTC
AGCCAAAAACACTGTTGTCTTTATTGAAGATGAGGGACAATTACAAGACT
TGTTCCAAGAAATCCAGACAggtattaaccctttaagtagcAATGCCGAG
TatactacaatcatggactttaatgtttgagaaaaacactggaaaatgcT
CTGGAAAAACCATGGAATGGTCCCTCTCCCCCCCCCCAGTGGCAATGTTT
AGTGCGAACGACCTTCCCACCGACTTTTCCAATGCCCTTCAACATTGCAA
CTGGGGGGAAGGGGGGGGGAAGGAGGGTTGTCTCACaattttcgtccatg
attgtagacATGGGCGTAGCCCTCTTGTATAGCCCAGTTTGCGTTAGAAA
TCGTCATGTTTTATGGccaagcaaaaaataaaataaaaagtctttccagc
gagattttaagccaaaaagtcaaaaaaatgcaaaaatttgacaaaaatcc
acttttttcagattttgaccatttttggttaacgagtgatccaagaacct
ccaaaattggccctgctttacttgattctgtcctctagcgaattaatttg
aagttttactactgggcacctttctatctACCGACATTCCTTAAttgggc
ggcgccgaaggcgcctaaAAGAACTGTAAACGAGCGaagtagcgattttc
tttaaaaaatgaccgtggtaCTTAAAGATTTAAATTGAACTATTCAAGGA
AAAAATCCGAAGCTTGGGACCTAAGGCTTAATGTTGCGAAGAGTTTATTT
TTTTGGGAGGTCGAAAACTGGGTGAAAACAGAGTGCACGTGAGTTTGACT
ATCGTCGCttttatttaaagttttattgGAGAAAAAGGTCATCGTAAAAC
TTTCCATGgcaaaaaaacatattcaattctACCAATGCTTTCTTTTATAG
GAATTAAACAGTTGGCACAATTTCCGTCCACCGCTAATGCCGTTGCCGAT
AAGAAAGCCAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAA
CCAAGATGGTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTG
GTTTCACAGCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTAACTAA
ATTATGACGTAAATAAACTTCTTAAAAGACTTTCGTCAAGATGGTGTATA
ATGTAAAAATACACATTGAATATAAAAATCACTAGCCTGCATCATATCAA
GCCTGTAAACTTAGTTTCATATCTTTTCTATagaagaaccagtaaatttt
tgatgagaatTTTTTTGCACATTTAGCCTAATATTGTTTTTACCCTGTTC
CTTATTTCTAGTGCAAAATTGAAGTATTCTAGGTTTGGTActctttttta
attaaatttaacTCCAATTTAACTCATAATTCGCGTACAATTTAGCCATT
CTGGTCTCAGCATTGTTTATaaattcttcttatttttgtcatttaaagct
ttgtaattttttttcatatgttATAATTGATGATTCTGAAAAGATGAAAC
AAACACAGTAGTCCTTaaattcaaattcttattttcGGTTGTTTATCATA
TAGGATCAAAGCTCGATCTCTTCAAAGTCTGTATGTTTCTACGGTCATCA
CTATTCATGACCACAAGGCATCCAGCAGACCGATGAATTAAGAAATCAAA
ACTAAAGTGAAACTAAGAATGTAtttacaataaataaaaaataataaaat
ttatgaATTAATTATTAATTTCAAAAGAAACGATTTATATAAACAAAGCC
ACAAAAAGTAAAGTTAAA Coding sequence (CDS) from alignment at scaffold_464:236422..238589+ >TCONS_00067151 ID=TCONS_00067151|Name=TCONS_00067151|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_464:236422..238589+ (Clytia hemisphaerica)
ATGAATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGT
CGATTTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAA
GAGCCATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATT
GAAGATGAGGGACAATTACAAGACTTGTTCCAAGAAATCCAGACAgGAAT
TAAACAGTTGGCACAATTTCCGTCCACCGCTAATGCCGTTGCCGATAAGA
AAGCCAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAA
GATGGTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTT
CACAGCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTAACTAAATGA
ATATCAACAACTTAACATCCCCGAATTTCCGAACTCATCATTTTGTCGAT
TTACGCGCAGGAAGACCTGCTCGATTCAATCACGTTGCAAGAGCAAGAGC
CATCCACCAAGCACGAAACTCAGCCAAAAACACTGTTGTCTTTATTGAAG
ATGAGGGACAATTACAAGACTTGTTCCAAGAAATCCAGACAgGAATTAAA
CAGTTGGCACAATTTCCGTCCACCGCTAATGCCGTTGCCGATAAGAAAGC
CAACCTGCTTTCTAACAAGCAATTTCTGTGCATCACAACAAACCAAGATG
GTTCCATTGATAAAGCTTTGGGTCGACAAAGAGTCTATCTTGGTTTCACA
GCAAATTCAGTTTTGAACCATTTGGCTATGACAGTTAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067151-exon-scaffold_464-1491911889:236422..236892 | TCONS_00067151-exon-scaffold_464-1491911889:236422..236892 | Clytia hemisphaerica | exon |
| TCONS_00067151-exon-scaffold_464-1510915933:236422..236892 | TCONS_00067151-exon-scaffold_464-1510915933:236422..236892 | Clytia hemisphaerica | exon |
| TCONS_00067151-exon-scaffold_464-1575043694:236422..236892 | TCONS_00067151-exon-scaffold_464-1575043694:236422..236892 | Clytia hemisphaerica | exon |
| TCONS_00067151-exon-scaffold_464-1491911889:237722..238589 | TCONS_00067151-exon-scaffold_464-1491911889:237722..238589 | Clytia hemisphaerica | exon |
| TCONS_00067151-exon-scaffold_464-1510915933:237722..238589 | TCONS_00067151-exon-scaffold_464-1510915933:237722..238589 | Clytia hemisphaerica | exon |
| TCONS_00067151-exon-scaffold_464-1575043694:237722..238589 | TCONS_00067151-exon-scaffold_464-1575043694:237722..238589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:236422..238589 + |
Blast
The following BLAST results are available for this feature:
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