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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067140 ID=TCONS_00067140|Name=TCONS_00067140|organism=Clytia hemisphaerica|type=transcript|length=707bp
AtggaattaaaattaaaaacaacttttctCTCTTTACACAACTATTTCTT
GGAATTACCTTCGCCACTGATAAAACGCTTTATAAATGAGAGAAAAATCT
ACCAGACAGTGTTTTGAGTGTTCCTTGGAAGATAGAGGGTAGCGAAAGAA
TTTATTCACcgaaacaaaaaaagtaaactTGTTGTTATCATCGGTTACAT
TTATTCACAGGAAAATGGCATTGTTGACAGGTGGGGCTGGAATGGCACTT
GAAGCGGTTGGCCCAGTTGTAGAATCAGGCGGGATCGTTGGTGGTGCTGT
TGGCGGGTTGGTAGGTGGTGCTGTAGGCGGGTGCGTCGGCTTGGctacaa
aaaataaagaagtcgGGCAATTCACTGGAGGTGTAGTTGGCGGTGCTGCT
GGCGCCGTCGCTGGAGGGTTTACCGGAAATTGTTTGGTACCAGGTGGACC
TGGTGCCTTGGTTGGCGGTGCCTCTGGATGTCTTGCTGGAGCCGGTGGCG
GCTATGTAGCCTCTGGAATATTATATGATACTTTCAAATGATGATAAATA
AGAGACAAATACAATTTTGAAAAGTAGCATGCATATTTAGAGAGCAGTAT
CATTTTTTATActttcattttagattttgttGGCGATTATACAATGTTTG
TAACTTAGTTATTCAAAGTTCTTAAAGATGaagttgtttgaaaaaaaatc
cttaaag Run BLAST on NCBI protein sequence of TCONS_00067140-protein >TCONS_00067140-protein ID=TCONS_00067140-protein|Name=TCONS_00067140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MALLTGGAGMALEAVGPVVESGGIVGGAVGGLVGGAVGGCVGLATKNKEV
GQFTGGVVGGAAGAVAGGFTGNCLVPGGPGALVGGASGCLAGAGGGYVAS
GILYDTFK Run BLAST on NCBI transcript from alignment at scaffold_464:181179..182589+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067140 ID=TCONS_00067140|Name=TCONS_00067140|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at scaffold_464:181179..182589+ (Clytia hemisphaerica)
AtggaattaaaattaaaaacaacttttctCTCTTTACACAACTATTTCTT
GGAATTACCTTCGCCACTGATAAAACGCTTTATAAATGAGAGAAAAATCT
ACCAGACAGTGTTTTGAGTGTTCCTTGGAAGATAGAGGGTAGCGAAAGAA
TTTATTCACcgaaacaaaaaaagtaaactTGTTGTTATCATCGGTTACAT
TTATTCACAGGTAAGAGATATAGAATCTATTTTGTAACATATTGTCCAGA
ATTTCATATAATATTAGCCATgtataggcaaaaataaaataatgtagTTT
TTCCGGAATgcggataaaagaaaaaagcttCATGCTCTCATCattgaaaa
ataacttttataaacaaacagtatgaagtaagccctggaaaatctttttt
ttttcacccggtCGGTTTacattacatttttttattttcgccataTTATT
ACAAAATTTTTATTCTGCTAAGATTTCTTCCCTTCCTTGGTATACTAAAA
CAAAACACCATAATtaaattaaatatttatttcaatacccctatgtcaca
gacccgctggtaCCCCAGCCCcgcccactggaaaatttggcaaaaatttc
ttccccggtgggaaaataccctgttacttcagccccactgggggtttgac
ttttatttcatccctATTGGAGatccaatgtttaaaaattgcactccaaa
atcatCACTGGATCTTTTAACCTTGgaataataaaatttctatctccatt
gacatttcaataggaatttttttccccactgaggaaaaagtttcaccggg
gctgtgagacagggatttattttgattaaaaaagtaaTACTGATTAGTAC
TGTACTTTTGATTTATCCCATAAAAACCTCGTTCGTCGATGATTCCTGGA
TGTTGTTGTTTTAGGAAAATGGCATTGTTGACAGGTGGGGCTGGAATGGC
ACTTGAAGCGGTTGGCCCAGTTGTAGAATCAGGCGGGATCGTTGGTGGTG
CTGTTGGCGGGTTGGTAGGTGGTGCTGTAGGCGGGTGCGTCGGCTTGGct
acaaaaaataaagaagtcgGGCAATTCACTGGAGGTGTAGTTGGCGGTGC
TGCTGGCGCCGTCGCTGGAGGGTTTACCGGAAATTGTTTGGTACCAGGTG
GACCTGGTGCCTTGGTTGGCGGTGCCTCTGGATGTCTTGCTGGAGCCGGT
GGCGGCTATGTAGCCTCTGGAATATTATATGATACTTTCAAATGATGATA
AATAAGAGACAAATACAATTTTGAAAAGTAGCATGCATATTTAGAGAGCA
GTATCATTTTTTATActttcattttagattttgttGGCGATTATACAATG
TTTGTAACTTAGTTATTCAAAGTTCTTAAAGATGaagttgtttgaaaaaa
aatccttaaag Coding sequence (CDS) from alignment at scaffold_464:181179..182589+ >TCONS_00067140 ID=TCONS_00067140|Name=TCONS_00067140|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_464:181179..182589+ (Clytia hemisphaerica)
ATGGCATTGTTGACAGGTGGGGCTGGAATGGCACTTGAAGCGGTTGGCCC
AGTTGTAGAATCAGGCGGGATCGTTGGTGGTGCTGTTGGCGGGTTGGTAG
GTGGTGCTGTAGGCGGGTGCGTCGGCTTGGctacaaaaaataaagaagtc
gGGCAATTCACTGGAGGTGTAGTTGGCGGTGCTGCTGGCGCCGTCGCTGG
AGGGTTTACCGGAAATTGTTTGGTACCAGGTGGACCTGGTGCCTTGGTTG
GCGGTGCCTCTGGATGTCTTGCTGGAGCCGGTGGCGGCTATGTAGCCTCT
GGAATATTATATGATACTTTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067140-exon-scaffold_464-1491911889:181179..181388 | TCONS_00067140-exon-scaffold_464-1491911889:181179..181388 | Clytia hemisphaerica | exon |
| TCONS_00067140-exon-scaffold_464-1510915933:181179..181388 | TCONS_00067140-exon-scaffold_464-1510915933:181179..181388 | Clytia hemisphaerica | exon |
| TCONS_00067140-exon-scaffold_464-1575043694:181179..181388 | TCONS_00067140-exon-scaffold_464-1575043694:181179..181388 | Clytia hemisphaerica | exon |
| TCONS_00067140-exon-scaffold_464-1491911889:182093..182589 | TCONS_00067140-exon-scaffold_464-1491911889:182093..182589 | Clytia hemisphaerica | exon |
| TCONS_00067140-exon-scaffold_464-1510915933:182093..182589 | TCONS_00067140-exon-scaffold_464-1510915933:182093..182589 | Clytia hemisphaerica | exon |
| TCONS_00067140-exon-scaffold_464-1575043694:182093..182589 | TCONS_00067140-exon-scaffold_464-1575043694:182093..182589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_464 | supercontig | scaffold_464:181179..182589 + |
Blast
The following BLAST results are available for this feature:
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