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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067127 ID=TCONS_00067127|Name=TCONS_00067127|organism=Clytia hemisphaerica|type=transcript|length=4327bpRun BLAST on NCBI transcript from alignment at scaffold_464:37619..59955+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067127 ID=TCONS_00067127|Name=TCONS_00067127|organism=Clytia hemisphaerica|type=transcript|length=22337bp|location=Sequence derived from alignment at scaffold_464:37619..59955+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00067127 vs. Swiss-Prot (Human)
Match: UB2Q2 (Ubiquitin-conjugating enzyme E2 Q2 OS=Homo sapiens GN=UBE2Q2 PE=1 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 3.517e-83 Identity = 170/389 (43.70%), Postives = 248/389 (63.75%), Query Frame = 1
Query: 199 MSRRELKKEIEYLKTVFPKTQHVLRILSASTDDLTCSF-TDNSGKKH------TIICSITDSYPDFPPIWCSESEAPQLVEIVEKINAITSSNHLLFTMTKTLAIELFTMIKV--EVPTSVLEATLVSDEKGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFREDPVNDESKEKDEVGEVNYSQLQKLRGVQREEYLSGKVSGSVQATDRLMKELKNIYKSDSFKKNLYTLELKEESNLYDWFVKLKGFDKEXXXXXXXXXXXXXXXXTDHICLNLSYTSRFPMEPPFVRVCYPAITGGYVLNGGAICMELLTPQGWSSAYSIEALIMQISATLVKGKARVDFSSTNRINTVYSLNKAQQSYKTMVQIHEKSGWFTPPKDEG 1338
MS LK E+++L ++F K RI+S D+L C F G H T+ C+IT+SYP PIW +SE P L ++E++ T +N+LL K L EL ++ + + +L+ L + + G E+ +E + ++E +IED D + E+P++ + E + + + N + L+K+R QR+++L+G VSGSVQA+DRLMKEL++IY+S S+K +Y++EL +S LYDW VKL+ D +S LH DL L + + ++I LN S+ FP +PPFVRV P ++GGYVL GGA+CMELLT QGWSSAYSIE++IMQI+ATLVKGKARV F + Y+L +AQQSY ++VQIHEK+GW+TPPK++G
Sbjct: 1 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNITESYPSSSPIWFVDSEDPNLTSVLERLED-TKNNNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMK--------EEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVKLQKVDPDSPLHSDLQILKEKEG-IEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGAN---KNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG 375 The following BLAST results are available for this feature:
BLAST of TCONS_00067127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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