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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067091 ID=TCONS_00067091|Name=TCONS_00067091|organism=Clytia hemisphaerica|type=transcript|length=570bp
TTGAAGACAATCATACACATTCACACAAACATTAACGGAAAATTCAAACC
CCACTCcaatgttttcaaaacatattATTACGTGGAGCTACATGTTGAAG
ATAACAAAACAAAGCTTATTCATCAAGTCTCGCATTTTGTACAAGACCTT
CCTTCAGGGTTTTGTCTCAAGAAGGATTACAAGAAAAACAGTCAAAGTCA
AATCTTTTTGTTGACACCTGTGAAAAATCAATATGTTTGGTTGAAATACC
TTCTACATGTTCTGACCGATGTCTTCAGcaagaccaaagaaactaacGTC
ACTTTGGTTTTATTAGATAACGAAAGCTCTGATGGAAACTATGAGCAATT
GCTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTAACCAAAAACA
AGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAAGGCGGTCCCG
AAAGATGGAATCGCCATGATTCTAgatcttcacctccaaatccCTTTGGA
TTTCTTCGACAGAACAAGAAaggtttgttttcatttttttttggttgaaa
aacaaTAAGATAGTGAAGGC Run BLAST on NCBI protein sequence of TCONS_00067091-protein >TCONS_00067091-protein ID=TCONS_00067091-protein|Name=TCONS_00067091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
LKTIIHIHTNINGKFKPHSNVFKTYYYVELHVEDNKTKLIHQVSHFVQDL
PSGFCLKKDYKKNSQSQIFLLTPVKNQYVWLKYLLHVLTDVFSKTKETNV
TLVLLDNESSDGNYEQLLESTKDVPSKYILTKNKKFSKVKILNEGLKAVP
KDGIAMILDLHLQIPLDFFDRTRKVCFHFFLVEKQ Run BLAST on NCBI transcript from alignment at scaffold_463:764..2015- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067091 ID=TCONS_00067091|Name=TCONS_00067091|organism=Clytia hemisphaerica|type=transcript|length=1252bp|location=Sequence derived from alignment at scaffold_463:764..2015- (Clytia hemisphaerica)
TTGAAGACAATCATACACATTCACACAAACATTAACGGAAAATTCAAACC
CCACTCCAATGTTTTCAAAACATATTATTACGTGGAGCTACATGTTGAAG
ATAACAAAACAAAGCTTATTCATCAAGTCTCGCATTTTGTACAAGACCTT
CCTTCAGGGTTTTGTCTCAAGAAGGATTACAAGAAAAACAGTCAAAGTCA
AATCTTTTTGTTGACACCTGTGAAAAATCAATATGTTTGGTTGAAATACC
TTCTACATGTTCTGACCGATGTCTTCAGCAAGACCAAAGAAACTAACGTA
GGTGTCATTTTGTTTAATGTAAAATTATTGTCTTCTCTGTCATCTCAGTA
GAGCTTATCTGGTGCTAAATTGTATTACTGTAATTTGAGTATAAAAAATT
GTTTTCTTTTGATTTTCTTATTGCAAGGAAAGGAGAAAAAGTGTGGTATT
TTGATTCGTGTTTATTGTTTAATAATATTGAAGGATTTTAGGGGAACACA
CAGAGTGCCACTTTTGATAGTAATTGTGAACTACAATCGGCGCCAAAATA
TTTGGCACAAAAGGGGAACTCCCTCAAAACTCTAAAACTGCAAGTGATTT
TTAAGTGCTTTGAAGTACAGTTCGGAAGTAGAGTTTTAACTCTGAGTTTT
AACATTAGACTTAGAGCCTATGATCTCTGGATATAAAAGCTCAAAAATGT
TCCAATAAGGCTGAGAATATAGCCACTTAACCAAACCGAAAATCCAATGA
AGCAAAGTGGAAGTACTGAGACTGCAATTCTCGCCCGACTTTTAAATTCT
GAACAACCTTAAAATACCCAAGATTGCCAATATATTTCCGCGCTGATTGT
AGTGTTTTTTTCTATTTTATTAAAGTTCGAAAATCTTGCCCAAATCTTCC
ATGGCAAAGGAAGGAAAGGCGTAGAGGCAAAACTTGGGAGAATATATCTC
AATCAAGTTTTTCGAATTCTGCGTTTCAGGTCACTTTGGTTTTATTAGAT
AACGAAAGCTCTGATGGAAACTATGAGCAATTGCTGGAATCCACAAAAGA
TGTTCCTTCAAAGTATATCCTAACCAAAAACAAGAAATTCAGCAAAGTGA
AGATCTTGAACGAAGGATTGAAGGCGGTCCCGAAAGATGGAATCGCCATG
ATTCTAGATCTTCACCTCCAAATCCCTTTGGATTTCTTCGACAGAACAAG
AAAGGTTTGTTTTCATTTTTTTTTGGTTGAAAAACAATAAGATAGTGAAG
GC Coding sequence (CDS) from alignment at scaffold_463:764..2015- >TCONS_00067091 ID=TCONS_00067091|Name=TCONS_00067091|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_463:764..2015- (Clytia hemisphaerica)
GTCACTTTGGTTTTATTAGATAACGAAAGCTCTGATGGAAACTATGAGCA
ATTGCTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCTAACCAAAA
ACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGAAGGCGGTC
CCGAAAGATGGAATCGCCATGATTCTAGATCTTCACCTCCAAATCCCTTT
GGATTTCTTCGACAGAACAAGAAAGGTTTGTTTTCATTTTTTTTTGGTTG
AAAAACAATAATTGAAGACAATCATACACATTCACACAAACATTAACGGA
AAATTCAAACCCCACTCCAATGTTTTCAAAACATATTATTACGTGGAGCT
ACATGTTGAAGATAACAAAACAAAGCTTATTCATCAAGTCTCGCATTTTG
TACAAGACCTTCCTTCAGGGTTTTGTCTCAAGAAGGATTACAAGAAAAAC
AGTCAAAGTCAAATCTTTTTGTTGACACCTGTGAAAAATCAATATGTTTG
GTTGAAATACCTTCTACATGTTCTGACCGATGTCTTCAGCAAGACCAAAG
AAACTAACGTCACTTTGGTTTTATTAGATAACGAAAGCTCTGATGGAAAC
TATGAGCAATTGCTGGAATCCACAAAAGATGTTCCTTCAAAGTATATCCT
AACCAAAAACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATTGA
AGGCGGTCCCGAAAGATGGAATCGCCATGATTCTAGATCTTCACCTCCAA
ATCCCTTTGGATTTCTTCGACAGAACAAGAAAGGTTTGTTTTCATTTTTT
TTTGGTTGAAAAACAATAATTGAAGACAATCATACACATTCACACAAACA
TTAACGGAAAATTCAAACCCCACTCCAATGTTTTCAAAACATATTATTAC
GTGGAGCTACATGTTGAAGATAACAAAACAAAGCTTATTCATCAAGTCTC
GCATTTTGTACAAGACCTTCCTTCAGGGTTTTGTCTCAAGAAGGATTACA
AGAAAAACAGTCAAAGTCAAATCTTTTTGTTGACACCTGTGAAAAATCAA
TATGTTTGGTTGAAATACCTTCTACATGTTCTGACCGATGTCTTCAGCAA
GACCAAAGAAACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067091-exon-scaffold_463-1575043694:1719..2015 | TCONS_00067091-exon-scaffold_463-1575043694:1719..2015 | Clytia hemisphaerica | exon |
| TCONS_00067091-exon-scaffold_463-1575043694:764..1036 | TCONS_00067091-exon-scaffold_463-1575043694:764..1036 | Clytia hemisphaerica | exon |
| TCONS_00067091-exon-scaffold_463-1510915933:1719..2015 | TCONS_00067091-exon-scaffold_463-1510915933:1719..2015 | Clytia hemisphaerica | exon |
| TCONS_00067091-exon-scaffold_463-1510915933:764..1036 | TCONS_00067091-exon-scaffold_463-1510915933:764..1036 | Clytia hemisphaerica | exon |
| TCONS_00067091-exon-scaffold_463-1491911889:1719..2015 | TCONS_00067091-exon-scaffold_463-1491911889:1719..2015 | Clytia hemisphaerica | exon |
| TCONS_00067091-exon-scaffold_463-1491911889:764..1036 | TCONS_00067091-exon-scaffold_463-1491911889:764..1036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_463 | supercontig | scaffold_463:764..2015 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008428 | Chond_GalNAc |
| IPR029044 | Nucleotide-diphossugar_trans |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008376 | acetylgalactosaminyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0032580 | Golgi cisterna membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0032580 |
Golgi cisterna membrane |
| molecular_function |
GO:0008376 |
acetylgalactosaminyltransferase activity |
Blast
The following BLAST results are available for this feature:
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