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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067088 ID=TCONS_00067088|Name=TCONS_00067088|organism=Clytia hemisphaerica|type=transcript|length=1462bpRun BLAST on NCBI protein sequence of TCONS_00067088-protein >TCONS_00067088-protein ID=TCONS_00067088-protein|Name=TCONS_00067088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp CRPPGIYKQMYLQELFQRYGNVNDTPKAPELPEWCFDEEDQNVSDDEGDGRun BLAST on NCBI transcript from alignment at scaffold_463:304056..316222+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067088 ID=TCONS_00067088|Name=TCONS_00067088|organism=Clytia hemisphaerica|type=transcript|length=12167bp|location=Sequence derived from alignment at scaffold_463:304056..316222+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_463:304056..316222+ >TCONS_00067088 ID=TCONS_00067088|Name=TCONS_00067088|organism=Clytia hemisphaerica|type=CDS|length=15084bp|location=Sequence derived from alignment at scaffold_463:304056..316222+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067088 vs. Swiss-Prot (Human)
Match: MCE1 (mRNA-capping enzyme OS=Homo sapiens GN=RNGTT PE=1 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 2.809e-115 Identity = 191/412 (46.36%), Postives = 265/412 (64.32%), Query Frame = 1
Query: 4 RPPGIYKQMYLQELFQRYGNVNDTPKAPELPEWCFDEEDQNVSXXXXXXXXXXXXXXXNEGRQPKKMKRRPYNENAKFCENIPLETVSARGAE----RIQDICDEMLQWNRGNFGGSQPVSMDRKNVDLIQQKPYRVTWKADGTRYMMLIVKEGEVYFLDRDNSVFLSDKFFFPRRKQPEEHIFDTLVDGELVMDKDEKGKLHPRYLIYDIIKFEGQDVGHTDLDRRLLCIDKEIIKPRAIGVQSGRVDKSSEPFGIRKKAFHAVEGAQKLMDEIMPK-MPHETDGLIFQPLLDPYVPGQCPFVLKWKPHELNSVDFLLNIITVKREGCLAERMGALFVQGYDQPFSQIKVTAELKHYDKRIIECTWDKNQWKFLRLREDKSFPNAFKTATSVCESIKKPVTKDFLLDYIKR 1224
RPPGIYK YL+ELF+RYG++ + P P LP+WCF++++ D++G + R+ +++K A F E + ++ V+ + +Q C + W F G+QPVSMD++N+ L+ KPY+V+WKADGTRYMMLI EV+ +DRDNSVF FP RK H+ +TL+DGE+++D+ G+ PRYLIYDIIKF Q VG D + RL CI++EII PR +++G +DK+ EPF +R K F + ++KL++ K + HE DGLIFQP Y PG+C +LKWKP LNSVDF L I + EG L + +G L+V GY++PF+QIKVT ELK YD +IIEC ++ N W F+R R DKSFPNA+ TA +VC SI PVTK+ L ++I R
Sbjct: 160 RPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKESEPGSSASFGKRRKERLKL-----GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDR-VNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPT-GKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564 The following BLAST results are available for this feature:
BLAST of TCONS_00067088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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