TCONS_00067083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067083
Unique NameTCONS_00067083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067083 ID=TCONS_00067083|Name=TCONS_00067083|organism=Clytia hemisphaerica|type=transcript|length=189bp
CGCTGTTTTATAACCACCACTGGGAATCCGTCACCTTTATGGCCAAAGTT
AGCACCAGTGTCAAAGGCAAACAATCGATTTCATACGATCGCTTTGCAAC
TCCAGGTTGGGGTCAGACTTTTTTAAATGGTCAGTGCTGTGACCCCATCC
AGAAAATGGTGGTTGGAACATTTGAAAAAGCTATTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_463:182940..183333+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067083 ID=TCONS_00067083|Name=TCONS_00067083|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_463:182940..183333+ (Clytia hemisphaerica)
CGCTGTTTTATAACCACCACTGGGAATCCGTCACCTTTATGGCCAAAGTT
AGCACCAGTGTCAAAGGCAAACAATCGATTTCATACGATCGCTTTGCAAC
TCCAGGTTGGGGTCAGACTTTTTTAAATGGTCAGTGCTGTGACCCCATCC
AGAAAATGGTGGTTGGAACATTTGAAAAAGGTAGTATTATTAATGATAAT
GAAACCCACCTAAGTGACATCAATTTCTTTTTGGTTACCAATCATTATAC
ATTCAGTTTTTTATTATATCCTTCATAAAGTTCCTTCATCTTTCTACATG
GATTATGCTTGTATCAGCATAGCTGCGCTGGCAACAATATGTCACCACTT
TCTAAAAGCCATGggttttctttaaattttattaGCTATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041916XLOC_041916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067083-exon-scaffold_463-1491911889:182940..183119TCONS_00067083-exon-scaffold_463-1491911889:182940..183119Clytia hemisphaericaexon
TCONS_00067083-exon-scaffold_463-1510915933:182940..183119TCONS_00067083-exon-scaffold_463-1510915933:182940..183119Clytia hemisphaericaexon
TCONS_00067083-exon-scaffold_463-1575043694:182940..183119TCONS_00067083-exon-scaffold_463-1575043694:182940..183119Clytia hemisphaericaexon
TCONS_00067083-exon-scaffold_463-1491911889:183325..183333TCONS_00067083-exon-scaffold_463-1491911889:183325..183333Clytia hemisphaericaexon
TCONS_00067083-exon-scaffold_463-1510915933:183325..183333TCONS_00067083-exon-scaffold_463-1510915933:183325..183333Clytia hemisphaericaexon
TCONS_00067083-exon-scaffold_463-1575043694:183325..183333TCONS_00067083-exon-scaffold_463-1575043694:183325..183333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:182940..183333 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
CGCTGTTTTATAACCACCACTGGGAATCCGTCACCTTTATGGCCAAAGTTAGCACCAGTGTCAAAGGCAAACAATCGATTTCATACGATCGCTTTGCAACTCCAGGTTGGGGTCAGACTTTTTTAAATGGTCAGTGCTGTGACCCCATCCAGAAAATGGTGGTTGGAACATTTGAAAAAGCTATTGAAG20406080100120140160180Sequence
Match NameE-valueIdentityDescription
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