TCONS_00067081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067081
Unique NameTCONS_00067081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067081 ID=TCONS_00067081|Name=TCONS_00067081|organism=Clytia hemisphaerica|type=transcript|length=340bp
TGCAGGTCAGTTTACAGCAATCCAGTTTTAACTTGTATACTATAAGTCTT
TAGCTTAAAGTTTCAGCCCAAAGTTTTGTATATATTATTAAAAGTATAAC
TAATAAAACATGGAACAAGtggaaatatttttagaagttgATGGAGCAGA
AGACGTTGAACATGAAAAAGAcgttgaaaatgaagaagacctTGAACATG
AAGAGGATTGGACTTTGGACGTATTTGAAACTGACAAAACTGAATTCACT
GACTAGAGAGAACTGACTGACCACAATGACCTGTGGGAAACAGAACCAAA
TGACTTGACGTAGACACCTTTTGACAATCGTCATATTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_463:171729..174764+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067081 ID=TCONS_00067081|Name=TCONS_00067081|organism=Clytia hemisphaerica|type=transcript|length=3036bp|location=Sequence derived from alignment at scaffold_463:171729..174764+ (Clytia hemisphaerica)
TGCAGGTCAGTTTACAGCAATCCAGTTTTAACTTGTATACTATAAGTCTT
TAGCTTAAAGTTTCAGCCCAAAGTTTTGGTAAGTTATTTTACAACTTTAC
TTTAATTgtttttatacaactttttgaACCAAACCTTTAAAAGTTTAATG
TGAGAACTTGGGAAAATTGCAAATATGGGAACCAAAACTTTTGGCTGTTT
TAGCTATATAATGAAGGGCTACAGTATTCCAGTTTAAAAAGCCATACAAG
GGCATTGAAGAACCTCTTTTATAAAACCCACTGTAACCCAAGGGGAGACT
AGGATtgatgggtgtcgggtatgttGCATGGCCAGACCTCTGGACCTTTT
ACCCTTACAGACAGAcagagactgaattttggtgaaaggtgacccttaga
gagactcggTGTAGAAAAACCCAACCCTTAGATAGGCTTGAAGCGACAAG
ATTATGTACAAAAAAGAAACAGGGAGTTCTGGGTTACgttaaaactaaaa
tttctcttattttggaagaaaaatgCGCTTGCGCCTCCATCCCAGCACGC
TAGTGTCCTGCCTTGACTAGGTGAGAAAATCATACTGATTTGTAGCTGGG
TTTGATTTACAGCAAAAAGGTGACCCATAGAGAGACTAGAGTGTTTTACT
ACCAACCCTTGGACTTGGAGAGATTCTAGAAgtgaaaaaccgacccttaa
agGCACGAAAATTATACACGAAACCCATTTTAGTCTCAACACCAAACACC
ACTTGGAAAAAAGAGGTAAAAACCACCTAAGTTCTTCAATACCCTACATG
ACTAAAAatggaatacacgttttttttataaggaacacgtttataaggaa
ctcgaggctgaaaatggtccaaaaatatggaattgttaaggaactgctca
ggctgagaataagaaaacaagtcttaaggaacagtaaaagatggttatcc
aaatttcgcagctatgtaaataaggaactcgataaggaactttgaggctg
aaattctctgtaaaaataaggaactccaggctcagagcaaaattaaggtt
ccttatatataaaaaaatacttgtAGCCCAACTTCTCTGTCAAGGAAAGC
CTATAACTGTTAGGAACCTCAAGTTATTTCTTATTTCAGTATATATTATT
AAAAGTATAACTAATAAAACATGGAACAAGtggaaatatttttagaagtt
gATGGAGCAGAAGACGTTGAACATGAAAAAGAcgttgaaaatgaagaaga
cctTGAACATGAAGAGGGTATATACATTTATTTTGACAGTTTGATGGGGG
GGGTGCTTAGGCTAAAATTGGTGTCGGGTATATGTGCGTgcctttttaag
cagttttaaggcagttaggaacatttggtgAGTTCCTAAAAAATGACGTT
CGtatcttttcgcacttttttagcctagacgttgtagcaaaaatagtaaa
tataagcacactgtagcaatgattgaccaaactgttacaatgaaaattat
ccagcgcattttttatttttttatcttcttaatcttcaatgaagcactca
aagtttactgaatctaagcacataagatatccttataattattgatattc
actgaatCACCGTCcgttgtgcgctgcggtggagtgtatgacATAACTCG
CGAGGTAACTAACTCGCCTTTTGTTgaaagatcatattgggcgctTTGGC
GTTACCACCTTCGAAGCTAGCAAGGTGAATAAATGTGTTTTTGCCTGAGT
TTGTTTAGAGGGAaggtcattttttatcttttgataatgTAAAGTGCACC
TATATTATGGACATAAATCCTTATATAGACACTCCTTCTAAAAAAATACA
ATCCTTTGTTAATGTTAATGAAACTAGGTCGATCCTAtagtaaaaaattt
gataaagaaagaaaaagaaaggttttagtaatatttctttatttttaact
tttttggatGGAAACACCCACCTGTCCATAATAGGTAAAAAACATCAATG
TTAGAGAATGGGTGGACCCGacaatttgaaatattattttgccTCAATTT
CATCATCAATCATTGCCGTCAACGGGTGATACATTGCATTACTCTGCCAT
ACTTTTCACTGTGTATTTTACCAAAATGTGCACATAGCATGGACATGCTC
CTATTGTGGACACCTCCTTCTAAAAGATTTCAGTATTTATTAATCttaat
aaaacttttttagtttcttgCTATTCTAACATTCATTATTTCATATCATG
ATACTAGTAGTATAAAGGATTTATCACTCAAGTATGAAGTGTGAATCTGC
CGGTTTCTGCCTActttttagcccccccccttaaaaaggTGGAATAAGGA
TAGTGAAAAAAATCTCCCTAAAAATAAAATGGGAAAATATATGTTTATTC
AGCCACCCCATCCTTATTTCAAGTTTGGGGCAGAAATTGTTTAATAGCAC
AGGGTGTCCATAATTTGTTAgtaaataaacattaaaaaacatttattttt
atttttatcaacttttttgGTTATTTATTCTTGAAGTATCAATATTGCAT
AAATAACATCAAATATTATCAAATATCGAGACCTAGACCATACCATACAT
TTACCTTACCTAACCTAATTTTGTCCTATCCGAAACTGGATAATATATCA
TTTTCAGGACCTTTTCCTACTGAGGGGAACTTGCAAGTTTTTTTAACAAC
TTTCATTAATTAAAATAAAAGGCTATCACTATGTTGGACTCTTAAACCCT
ACCTGAACACACCAGCTAGTAGCAACAAAAAGCTAcattatattcaaaat
tttacaatgaaaaaaggttttttaaagGAATGGAAAACTTTAGGGCTGAC
AAATTTAACACTGTTGTTGGATAATATGTTTGATATGTAAATTGATTTTT
AGATTGGACTTTGGACGTATTTGAAACTGACAAAACTGAATTCACTGACT
AGAGAGAACTGACTGACCACAATGACCTGTGGGAAACAGAACCAAATGAC
TTGACGTAGACACCTTTTGACAATCGTCATATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041915XLOC_041915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067081-exon-scaffold_463-1491911889:171729..171806TCONS_00067081-exon-scaffold_463-1491911889:171729..171806Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1510915933:171729..171806TCONS_00067081-exon-scaffold_463-1510915933:171729..171806Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1575043694:171729..171806TCONS_00067081-exon-scaffold_463-1575043694:171729..171806Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1491911889:172868..172995TCONS_00067081-exon-scaffold_463-1491911889:172868..172995Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1510915933:172868..172995TCONS_00067081-exon-scaffold_463-1510915933:172868..172995Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1575043694:172868..172995TCONS_00067081-exon-scaffold_463-1575043694:172868..172995Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1491911889:174631..174764TCONS_00067081-exon-scaffold_463-1491911889:174631..174764Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1510915933:174631..174764TCONS_00067081-exon-scaffold_463-1510915933:174631..174764Clytia hemisphaericaexon
TCONS_00067081-exon-scaffold_463-1575043694:174631..174764TCONS_00067081-exon-scaffold_463-1575043694:174631..174764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:171729..174764 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.599993 tpm) - - (10.0022 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16656	2.64093	1.83982	0.599993	8.03477	5.19478	2.78546	5.21543	4.56431	3.95754	3.56691	4.68949	3.42217	2.05755	4.92099	5.77606	6.50573	10.0022	5.46988	4.82007	5.76058	5.36418	3.10517	1.69383	3.77998	1.55702	4.45618	0.792627	1.80354	2.45003
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
TGCAGGTCAGTTTACAGCAATCCAGTTTTAACTTGTATACTATAAGTCTTTAGCTTAAAGTTTCAGCCCAAAGTTTTGTATATATTATTAAAAGTATAACTAATAAAACATGGAACAAGtggaaatatttttagaagttgATGGAGCAGAAGACGTTGAACATGAAAAAGAcgttgaaaatgaagaagacctTGAACATGAAGAGGATTGGACTTTGGACGTATTTGAAACTGACAAAACTGAATTCACTGACTAGAGAGAACTGACTGACCACAATGACCTGTGGGAAACAGAACCAAATGACTTGACGTAGACACCTTTTGACAATCGTCATATTTAT50100150200250300Sequence
Match NameE-valueIdentityDescription
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