|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067074 ID=TCONS_00067074|Name=TCONS_00067074|organism=Clytia hemisphaerica|type=transcript|length=485bp
gagcaagattggtcaaaaaagcccaaaaagcCCAAAAAAAAGAGCTGTTT
GTCAAAGCCGAACAAACCTGATAATCAATATGAAGTTTCTGGTGAAATTC
TTTCTATTAACAACACTCTAGGTTCCTGTCTTCGAAGCGAATGGGGCTGG
AAACAACATCAACTGCCCACGAGGAGATCCCAAACTTTATTCACTCCCTT
ACCCTATGTTTAATTACATACCAAGTGCACAGAATTTCCAGACCGCTAAA
TCGTGCGAGTTTGTGGACCTCAATAGTGACGGATTCGTAGACTTCGCTTG
CAGTTTTTGTGAGGGAGATGTACTTTCATATTGTCTTACAGATTCTCCTT
TTTCTCACCCTCTACAATGTACCTACATGAACACGAAATGTGGTTGGGTT
CTGGCTGAGGAATATAAATATGGAACTGATTACTGTTCCTAATAGGCTGT
TTTTGTCTTAGTTGTAAAGATgtcttaaatttttt Run BLAST on NCBI transcript from alignment at scaffold_463:44492..46369+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067074 ID=TCONS_00067074|Name=TCONS_00067074|organism=Clytia hemisphaerica|type=transcript|length=1878bp|location=Sequence derived from alignment at scaffold_463:44492..46369+ (Clytia hemisphaerica)
gagcaagattggtcaaaaaagcccaaaaagcCCAAAAAAAAGGTAGgaac
taaaaattttgaaatattaagtCGGACTCTTATATTTAGAGGGAGCTGGA
ATTTTGAAGGGAAGGGGCTACGGGGGCTAGCAAAAGCCATACGAGCAAAC
CATTATTAAGTTAATAtaacaaaaacttttaagagcattttttcTTGTTG
TTAATGTCATCGACTGCGTTCCCATGCCTTATctattttctaaattgatg
agGAAATTAGCCCCGATAGCGTCTGGATCTTAATCACCACTGACGGATTG
AAGAAGTGTGACTTTAGAATGACCTCTACCTTTATGTCTATCTGAGTAGT
CTTAAGTTTTTCGTGTGCGTGTGGATACACCACCAAAGCTACACATTTAG
AATTTCaggtatattctcagcctttTACTTAAAACTCTCCATTCCATAAG
TAAATTCATTTGCGTCGATGAAAATTATGTCTTATGTATTATGTCTTTCG
ATTGTATTATCAAAACTGGTGCGATGGAGATCggatttttgtgttgtttt
ttttttggcgtgTTTTTTCGAGGTTGAAATTTGTCTGAACTCGTCCTAGT
TGTTTAGAAAGATCATCCGTATAAATTCGAATAGCTTTTAAAGGACCAAC
CAAGTTAATTTTAAGTAAGTGAAAGAATAAAAGCAGAGACGACTTCTTGT
GTGTCAAATCCAAGTTGTTTGTATACCAAAAAAACCGGTAAGTAGCCGAA
GTAGCATTGTTCTCTTCAGCCTGTACCAGACTCTTCTTTGttgactgaaa
agataacggGAGATATAAAAAACGCCCGTGTGGCGGCGGGGTGGTACAGG
CTATGTTCTCTTGAAAGTTATAAAGTTTAACTGTAAGTGGCGGGTTTCTC
TCATACTCTTGCGAAAAAGTTAAAATTCTTATCGTTCTGCGATTCAGACT
TTTTTGTTTGTGTGGGGGATGGGGGCGAGAGGTTTCAAGAAATGCTTATT
TATTCTCGGAAAACAAAACACTATATACTCTTCATTTCGCTCGCGGATGT
GATTTTGATTTGAACGGTTTGTGAACTGTGTGACTGGTACACCAATGTCG
AAGATACTGGTATAAACGTTGACACACCTTAGTCAGCTTTGgacctagac
gatgctatcgtccgtgtaatatattattatgatattacGATATTACATAT
TTGTATGCGGAAAAAAGAGTCTATGTTTACGACATTGAGCCCCTCAGACT
ATTTTTCGCCCGCGCAGACTAAATTTCCGCCCGACTGCTAATTTGCGTGT
TTGAGGTTAATCTTTTATATTcgaattcgtcttagactatagaaTAGCCT
ACTTTGGACCGCGAGGCCGATTATTTTACATACTAATTTCAACAATaacc
aaaaaataaatataatgtcTTCCTTTCATTTATAGAGCTGTTTGTCAAAG
CCGAACAAACCTGATAATCAATATGAAGTTTCTGGTGAAATTCTTTCTAT
TAACAACACTCTAGGTTCCTGTCTTCGAAGCGAATGGGGCTGGAAACAAC
ATCAACTGCCCACGAGGAGATCCCAAACTTTATTCACTCCCTTACCCTAT
GTTTAATTACATACCAAGTGCACAGAATTTCCAGACCGCTAAATCGTGCG
AGTTTGTGGACCTCAATAGTGACGGATTCGTAGACTTCGCTTGCAGTTTT
TGTGAGGGAGATGTACTTTCATATTGTCTTACAGATTCTCCTTTTTCTCA
CCCTCTACAATGTACCTACATGAACACGAAATGTGGTTGGGTTCTGGCTG
AGGAATATAAATATGGAACTGATTACTGTTCCTAATAGGCTGTTTTTGTC
TTAGTTGTAAAGATgtcttaaatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067074-exon-scaffold_463-1491911889:44492..44533 | TCONS_00067074-exon-scaffold_463-1491911889:44492..44533 | Clytia hemisphaerica | exon |
| TCONS_00067074-exon-scaffold_463-1510915933:44492..44533 | TCONS_00067074-exon-scaffold_463-1510915933:44492..44533 | Clytia hemisphaerica | exon |
| TCONS_00067074-exon-scaffold_463-1575043694:44492..44533 | TCONS_00067074-exon-scaffold_463-1575043694:44492..44533 | Clytia hemisphaerica | exon |
| TCONS_00067074-exon-scaffold_463-1491911889:45927..46369 | TCONS_00067074-exon-scaffold_463-1491911889:45927..46369 | Clytia hemisphaerica | exon |
| TCONS_00067074-exon-scaffold_463-1510915933:45927..46369 | TCONS_00067074-exon-scaffold_463-1510915933:45927..46369 | Clytia hemisphaerica | exon |
| TCONS_00067074-exon-scaffold_463-1575043694:45927..46369 | TCONS_00067074-exon-scaffold_463-1575043694:45927..46369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_463 | supercontig | scaffold_463:44492..46369 + |
Blast
The following BLAST results are available for this feature:
|
