TCONS_00067054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067054
Unique NameTCONS_00067054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067054 ID=TCONS_00067054|Name=TCONS_00067054|organism=Clytia hemisphaerica|type=transcript|length=767bp
GTGGAATCATACAGCCGCGTAAGGTTTGCGTAAGGCCACACTCAGATTTT
GGTAATTCTCCGAACgatttccaaaatctttttgaaaatactcctagcta
aaaaataatccttCTCCACTtctcaaagataaaaaaacttCACCTTGCTG
CCTTCTTTCTAGTCCTCTTGGTCAAAAATATAGAGACAACAGTAGTCAAA
CCTAAAACAAATTTTCTATGTACTCTTGCTAGTATATCTGTGCTTTTAAT
CTGGAGCTAAACAGAATCAAAGCAATTCACTTTTCAGATGCCTTTGTAGA
AAAATGAATTGCTTGACCTATTTATCTGCAGTTGAACGAAGTTTAAGACA
TTTGCTTTCATAGGGGTTTGACCAGATAATCATCAAGTGTTAGTTAGTCT
CCCTATCTATCGTTTGTCAGAAAAGACTCCCCCTTCACCAAAACCTACAA
AGGAGAAAGACCACCTATCTACGGCTAGCTAAGTACCCCAAAGATTGTGC
AAATAATAAGAATCACTCTCAATACAGcttaaaatttccaataaataaTG
TGTGACAAACCTTTTTGAAGAACCCTGTGTCATAAGAAAATACCAAAGTC
TTCTGCTTTGCATGATAGCTTTCTGTTGAGTGCTGCTGCTGCTGGATTAG
AAAACCATCGCTTGATGAGGTGTTAAACGAGTTAAAATATTCAATACTTG
TAAAAAGACTACTGAAGTTACATTCCAAGATTCCACTTGAAGCCCAAAAA
CTTCTGATAAATTTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_462:753835..754601

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067054 ID=TCONS_00067054|Name=TCONS_00067054|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_462:753835..754601 (Clytia hemisphaerica)
ATGAAATTTATCAGAAGTTTTTGGGCTTCAAGTGGAATCTTGGAATGTAA
CTTCAGTAGTCTTTTTACAAGTATTGAATATTTTAACTCGTTTAACACCT
CATCAAGCGATGGTTTTCTAATCCAGCAGCAGCAGCACTCAACAGAAAGC
TATCATGCAAAGCAGAAGACTTTGGTATTTTCTTATGACACAGGGTTCTT
CAAAAAGGTTTGTCACACAttatttattggaaattttaagCTGTATTGAG
AGTGATTCTTATTATTTGCACAATCTTTGGGGTACTTAGCTAGCCGTAGA
TAGGTGGTCTTTCTCCTTTGTAGGTTTTGGTGAAGGGGGAGTCTTTTCTG
ACAAACGATAGATAGGGAGACTAACTAACACTTGATGATTATCTGGTCAA
ACCCCTATGAAAGCAAATGTCTTAAACTTCGTTCAACTGCAGATAAATAG
GTCAAGCAATTCATTTTTCTACAAAGGCATCTGAAAAGTGAATTGCTTTG
ATTCTGTTTAGCTCCAGATTAAAAGCACAGATATACTAGCAAGAGTACAT
AGAAAATTTGTTTTAGGTTTGACTACTGTTGTCTCTATATTTTTGACCAA
GAGGACTAGAAAGAAGGCAGCAAGGTGaagtttttttatctttgagaAGT
GGAGaaggattattttttagctaggagtattttcaaaaagattttggaaa
tcGTTCGGAGAATTACCAAAATCTGAGTGTGGCCTTACGCAAACCTTACG
CGGCTGTATGATTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041893XLOC_041893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067054-exon-scaffold_462-1491911889:753835..754601TCONS_00067054-exon-scaffold_462-1491911889:753835..754601Clytia hemisphaericaexon
TCONS_00067054-exon-scaffold_462-1510915933:753835..754601TCONS_00067054-exon-scaffold_462-1510915933:753835..754601Clytia hemisphaericaexon
TCONS_00067054-exon-scaffold_462-1575043694:753835..754601TCONS_00067054-exon-scaffold_462-1575043694:753835..754601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:753835..754601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1.66208 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317901	0.248003	0.431932	0.352149	0.0857414	0.203262	0	0.0765262	0.428622	0.0663648	0	0.42344	0.114719	0.219568	0.433235	0.116232	0.334106	0.929501	0	0.2829	1.61887	1.66208	0.365145	0.83611	0.955685	0.426463	1.02902	1.09039	0.352845	1.07448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700Sequence
Match NameE-valueIdentityDescription
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