TCONS_00067044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067044
Unique NameTCONS_00067044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067044 ID=TCONS_00067044|Name=TCONS_00067044|organism=Clytia hemisphaerica|type=transcript|length=412bp
CCAAAATTCATTATTaagcaacatttttcaactgcgTAATGATAAGGTGC
CAAATCTGCAATTATTCCGCATTTTTCCCTCTATCGATTCCGTGGATCGA
AAAACTGTTAAGAAAACCAATTGGCTATTAAActgtgttgaaaagatatt
acttGAAACAATGTATTGGCGACTTTAAAGCTTGAATGGTAACTTGAAAA
GGTGCGTAATGATTGGGCTACCCTGGTAAATTTTACGCACCTAATTGATC
CGCGGCTATTGTTATTTATCACGGAATattcaagaaaaaacatttggtGG
GATAAAACGTACTTGAATAGGCTGCTTCTTAGCAACAACCATTTGCGCGC
TATCTTGTACCCAGATCTCCTCAGTTCAAAAGTTACttcatccttctaaa
atatcaaaatgg
Run BLAST on NCBI

transcript from alignment at scaffold_462:499786..500197

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067044 ID=TCONS_00067044|Name=TCONS_00067044|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at scaffold_462:499786..500197 (Clytia hemisphaerica)
ccattttgatattttagaaggatgaaGTAACTTTTGAACTGAGGAGATCT
GGGTACAAGATAGCGCGCAAATGGTTGTTGCTAAGAAGCAGCCTATTCAA
GTACGTTTTATCCCaccaaatgttttttcttgaatATTCCGTGATAAATA
ACAATAGCCGCGGATCAATTAGGTGCGTAAAATTTACCAGGGTAGCCCAA
TCATTACGCACCTTTTCAAGTTACCATTCAAGCTTTAAAGTCGCCAATAC
ATTGTTTCaagtaatatcttttcaacacagTTTAATAGCCAATTGGTTTT
CTTAACAGTTTTTCGATCCACGGAATCGATAGAGGGAAAAATGCGGAATA
ATTGCAGATTTGGCACCTTATCATTAcgcagttgaaaaatgttgcttAAT
AATGAATTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041883XLOC_041883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067044-exon-scaffold_462-1491911889:499786..500197TCONS_00067044-exon-scaffold_462-1491911889:499786..500197Clytia hemisphaericaexon
TCONS_00067044-exon-scaffold_462-1510915933:499786..500197TCONS_00067044-exon-scaffold_462-1510915933:499786..500197Clytia hemisphaericaexon
TCONS_00067044-exon-scaffold_462-1575043694:499786..500197TCONS_00067044-exon-scaffold_462-1575043694:499786..500197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:499786..500197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.74235	2.10779	4.01803	6.11221	1.26764	0.305461	0.491179	0.349507	0	0	0	1.29972	0.389381	0.572996	0.461128	0.437747	1.71971	0.282865	0	0.215214	0.466232	0.409699	0	0.182179	0.446297	1.30336	0.411612	0.625126	0	0.455175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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