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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067029 ID=TCONS_00067029|Name=TCONS_00067029|organism=Clytia hemisphaerica|type=transcript|length=1171bp
GGAGAAGGGCCAATGAAGAAACGATTACACCCATCTACGCGCAAGTTGAC
GGAAACTCTTCACCGGTGGAATACACCGAATTGAACACATACGCTTTACC
GTCGAACCACCAACCTGAATATCATGACATCGAGCCTAAAAATAATCGAT
TCTCTATGAAAGCTTCAACACAAAATGAAGAGCATGATGCAATAGTGGTC
ATTTCTACTCAAAGTAACCCAACAAATGAGGAACTCGAACCCGAATATCA
GACCCTCGAAGTTTCACCTTCTCAGAAGGCTGGAATAATATCTGAGAAGA
ATAAAAGTAACCCAACAGATGAGGAACTCGAACCCGAATATCAGACCCTA
GAAGTTTCACCTTCTGAGAAGAGTTCAATGCAATCTGAACAAGGCGATAC
AAATGGAGACGACTCGATTGATCCTGATGATAGTGTGCCTGATAAAAGTG
GAAAACCAGAATGTGAATACAGTATTAATGACACACACGAAAAGAATTCC
TCCGAAGCGTACATTGCACTTGACAAAGATGGACACTCAAAATCAAAAAG
CCAAAATGAAGAGGATATTGAGGAATCTTCGGATATTAAGGGCGATGATA
TTCCCGAGCAAGGATCCAGTGATGGCAACAAACTGAAGACTAGAGATCAA
ATTGAAAATGCTGCCCTTGACGATGAATCAAATCTGGTAACAGAGTACTG
TGAGCCGGGACAAATAATAAATAATGGTAAAaatgataatgataatgatG
ATGACGATGACGAAGTTAATTATTACAGTACACCAGTAACCAATGAAACG
GATGCATTGGTGAGACCGAATTCAGCATTGTACGCTAAAGTGAATAAAAA
TACGAAGACAGTTGAAGACTTAAGACATCTTTTTATTATTGACATCAAAA
ATACTTagaaaccttcggatgttcgTAACTTtgttagattaaaaaaaatc
cttATTAAAATATAATACGTATATAGATATAAAATGCATTTGTAGAAAAT
ATAGAATTTTCATCGCTGTAAACAAATCCGTTAATTAAGTAATTTATCTA
AATTTCCTAaccaattaaatttttatttatagttCAAGATACACACTTTT
CAACACCAAAACGCCTATTATCTAGGTTATTGGAAGAAATTTACTCCTCC
CCCATATGTAATTATATTTCC Run BLAST on NCBI protein sequence of TCONS_00067029-protein >TCONS_00067029-protein ID=TCONS_00067029-protein|Name=TCONS_00067029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
RRANEETITPIYAQVDGNSSPVEYTELNTYALPSNHQPEYHDIEPKNNRF
SMKASTQNEEHDAIVVISTQSNPTNEELEPEYQTLEVSPSQKAGIISEKN
KSNPTDEELEPEYQTLEVSPSEKSSMQSEQGDTNGDDSIDPDDSVPDKSG
KPECEYSINDTHEKNSSEAYIALDKDGHSKSKSQNEEDIEESSDIKGDDI
PEQGSSDGNKLKTRDQIENAALDDESNLVTEYCEPGQIINNGKNDNDNDD
DDDEVNYYSTPVTNETDALVRPNSALYAKVNKNTKTVEDLRHLFIIDIKN
T Run BLAST on NCBI transcript from alignment at scaffold_462:225269..226439 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067029 ID=TCONS_00067029|Name=TCONS_00067029|organism=Clytia hemisphaerica|type=transcript|length=1171bp|location=Sequence derived from alignment at scaffold_462:225269..226439 (Clytia hemisphaerica)
GGAAATATAATTACATATGGGGGAGGAGTAAATTTCTTCCAATAACCTAG
ATAATAGGCGTTTTGGTGTTGAAAAGTGTGTATCTTGaactataaataaa
aatttaattggtTAGGAAATTTAGATAAATTACTTAATTAACGGATTTGT
TTACAGCGATGAAAATTCTATATTTTCTACAAATGCATTTTATATCTATA
TACGTATTATATTTTAATaaggattttttttaatctaacaAAGTTAcgaa
catccgaaggtttctAAGTATTTTTGATGTCAATAATAAAAAGATGTCTT
AAGTCTTCAACTGTCTTCGTATTTTTATTCACTTTAGCGTACAATGCTGA
ATTCGGTCTCACCAATGCATCCGTTTCATTGGTTACTGGTGTACTGTAAT
AATTAACTTCGTCATCGTCATCatcattatcattatcattTTTACCATTA
TTTATTATTTGTCCCGGCTCACAGTACTCTGTTACCAGATTTGATTCATC
GTCAAGGGCAGCATTTTCAATTTGATCTCTAGTCTTCAGTTTGTTGCCAT
CACTGGATCCTTGCTCGGGAATATCATCGCCCTTAATATCCGAAGATTCC
TCAATATCCTCTTCATTTTGGCTTTTTGATTTTGAGTGTCCATCTTTGTC
AAGTGCAATGTACGCTTCGGAGGAATTCTTTTCGTGTGTGTCATTAATAC
TGTATTCACATTCTGGTTTTCCACTTTTATCAGGCACACTATCATCAGGA
TCAATCGAGTCGTCTCCATTTGTATCGCCTTGTTCAGATTGCATTGAACT
CTTCTCAGAAGGTGAAACTTCTAGGGTCTGATATTCGGGTTCGAGTTCCT
CATCTGTTGGGTTACTTTTATTCTTCTCAGATATTATTCCAGCCTTCTGA
GAAGGTGAAACTTCGAGGGTCTGATATTCGGGTTCGAGTTCCTCATTTGT
TGGGTTACTTTGAGTAGAAATGACCACTATTGCATCATGCTCTTCATTTT
GTGTTGAAGCTTTCATAGAGAATCGATTATTTTTAGGCTCGATGTCATGA
TATTCAGGTTGGTGGTTCGACGGTAAAGCGTATGTGTTCAATTCGGTGTA
TTCCACCGGTGAAGAGTTTCCGTCAACTTGCGCGTAGATGGGTGTAATCG
TTTCTTCATTGGCCCTTCTCC Coding sequence (CDS) from alignment at scaffold_462:225269..226439 >TCONS_00067029 ID=TCONS_00067029|Name=TCONS_00067029|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_462:225269..226439 (Clytia hemisphaerica)
ctAAGTATTTTTGATGTCAATAATAAAAAGATGTCTTAAGTCTTCAACTG
TCTTCGTATTTTTATTCACTTTAGCGTACAATGCTGAATTCGGTCTCACC
AATGCATCCGTTTCATTGGTTACTGGTGTACTGTAATAATTAACTTCGTC
ATCGTCATCatcattatcattatcattTTTACCATTATTTATTATTTGTC
CCGGCTCACAGTACTCTGTTACCAGATTTGATTCATCGTCAAGGGCAGCA
TTTTCAATTTGATCTCTAGTCTTCAGTTTGTTGCCATCACTGGATCCTTG
CTCGGGAATATCATCGCCCTTAATATCCGAAGATTCCTCAATATCCTCTT
CATTTTGGCTTTTTGATTTTGAGTGTCCATCTTTGTCAAGTGCAATGTAC
GCTTCGGAGGAATTCTTTTCGTGTGTGTCATTAATACTGTATTCACATTC
TGGTTTTCCACTTTTATCAGGCACACTATCATCAGGATCAATCGAGTCGT
CTCCATTTGTATCGCCTTGTTCAGATTGCATTGAACTCTTCTCAGAAGGT
GAAACTTCTAGGGTCTGATATTCGGGTTCGAGTTCCTCATCTGTTGGGTT
ACTTTTATTCTTCTCAGATATTATTCCAGCCTTCTGAGAAGGTGAAACTT
CGAGGGTCTGATATTCGGGTTCGAGTTCCTCATTTGTTGGGTTACTTTGA
GTAGAAATGACCACTATTGCATCATGCTCTTCATTTTGTGTTGAAGCTTT
CATAGAGAATCGATTATTTTTAGGCTCGATGTCATGATATTCAGGTTGGT
GGTTCGACGGTAAAGCGTATGTGTTCAATTCGGTGTATTCCACCGGTGAA
GAGTTTCCGTCAACTTGCGCGTAGATGGGTGTAATCGTTTCTTCATTGGC
CCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067029-exon-scaffold_462-1491911889:225269..226439 | TCONS_00067029-exon-scaffold_462-1491911889:225269..226439 | Clytia hemisphaerica | exon |
| TCONS_00067029-exon-scaffold_462-1510915933:225269..226439 | TCONS_00067029-exon-scaffold_462-1510915933:225269..226439 | Clytia hemisphaerica | exon |
| TCONS_00067029-exon-scaffold_462-1575043694:225269..226439 | TCONS_00067029-exon-scaffold_462-1575043694:225269..226439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:225269..226439 . |
Blast
The following BLAST results are available for this feature:
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