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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067020 ID=TCONS_00067020|Name=TCONS_00067020|organism=Clytia hemisphaerica|type=transcript|length=1807bp
ATGTTTTATTTTTTAGGACTTAGAACTAATCAAATGATTTTGAAACCAAG
TACCTTACATTTTCTTTTTCATAGATACTAGAAGAATAGATATTAAAATT
GGTAATAAGTATTGGTAAGAAGCAACGTTGGTAAGTTCTTTCTATCATAA
TGGAAAATAAACCTCGTGCACATAGTACAATTGACAACCAGAATGAAGTA
TGGATGGATATGAAAGGAGCCTGGTTGACATATGGTTTATCAGTGACATT
TCTTCATCTTTTGATTTTGAGTGTACCCATTTTTGCGACTGCTACTGCAT
GGACACTGACGAATGTCATTCATGATGTGTTCAACTATTTTCTGTTACAT
CACTTGAAAGGAGCTCCCTTTGAAACATATGATCAAGGACAATCCAGGCG
TTTGACACACTGGGAGCAAATAGATGCTGGTGAAATGAATACAGGCACTA
GAAAGTTTCTCACACTTGCACCCATTATCTTgtttataCTTGCAAGCTAT
TACTCACATTATAACGCAACGCATTTCATCATAAATCTGGCGGTCATGAT
GCTATGTCTAATACCCAAACTACCAACGTTTTACAAAGTGCGATTATTCG
GTATCAATAaatattaaaagaaaagaaaaaattaaaaatatatattgaca
aaaatggaGGATTTTTGATTGGAACAAACtggaacaaaattgaaaatcag
aaatttaTTAGTTATTTTGTTAATTAGTGATGGATTCAAAtgcaaaaact
atcaaaaactaCTTCTTTATgtccaaattcaatttttaagttAAAGCAGA
AGATTCTGAAATTAGATTATgtgattttttctcaatttctgcCATGAAAT
GCGTCTCGGAACAGTAAATCAATAATTTTAGGTTTgagttttttaagaaa
ttattttttactaaaatatcaatatataccttttttgtcacttttgtGAT
TTTGTAGTTCACATTCGGTTTAAAACTTTTTAgtacaaatgttttttttt
aacgaaAAAGTCTTTGATTTCCATCAACTTTTCTTGGCCTATTAAAGCAG
TTGATTTATAATTTCAGCATTATGATAACGTCTTATTTTTCCCACGTTGT
GTATattatgaataattttttttaaacgatAGTAACTTGCATCACAGCAA
TAAGAACACTGATATGTAGATCTTAGTCCACTGGATAGGTTATTAATACC
ACAAAGTGAatccttttcattttcatattataTCTATACGAAGTCGGCGT
ACTATAATGCAGAAAACATGAATTCAGGCCTCTGTCTTGAAATGATCGTG
TAACATCTAACATTGCTGAAAAATTTGACTTGAGATTCGGGGATGTAGCC
GAAATTTCAGATTTAGTTCTGTAAAGTTTGGTGATATCAAACTACTTGAT
TTCCTTGCCGATCCAGTGGATTAAGATGGATTCAGTGAATCTGAACGACA
TTATACctttaaaattattattattaaatgtctttttggattattttaat
aaataaaatataagtaAATAACAGTATTACTAAAATGTATAATAGTTCGT
TCGAGTGATTGTCTCTCCTCATTTGTGGATGTTTATGGCAAATTATTACC
CTTTCTCATTATATCCCCTCGTAGTAATCAACTTTATAGAAGCAATCAAA
TCTCTATAAAGGcaccaaatttttattttaaaattttccattttagaTAT
TGTATGGTCTTATCtcgaatattttgatattaatttTCCCATTCTTGTTT
TAGATTTCAGCAATAAAAgtgtaaaaatatacaattcAGTGCATGTCGAT
Gtgtatt Run BLAST on NCBI protein sequence of TCONS_00067020-protein >TCONS_00067020-protein ID=TCONS_00067020-protein|Name=TCONS_00067020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MENKPRAHSTIDNQNEVWMDMKGAWLTYGLSVTFLHLLILSVPIFATATA
WTLTNVIHDVFNYFLLHHLKGAPFETYDQGQSRRLTHWEQIDAGEMNTGT
RKFLTLAPIILFILASYYSHYNATHFIINLAVMMLCLIPKLPTFYKVRLF
GINKY Run BLAST on NCBI transcript from alignment at scaffold_462:889358..891904- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067020 ID=TCONS_00067020|Name=TCONS_00067020|organism=Clytia hemisphaerica|type=transcript|length=2547bp|location=Sequence derived from alignment at scaffold_462:889358..891904- (Clytia hemisphaerica)
ATGTTTTATTTTTTAGGACTTAGAACTAATCAAATGATTTTGAAACCAAG
TACCTTACATTTTCTTTTTCATAGATACTAGAAGAATAGATATTAAAATT
GGTAATAAGTATTGGTAAGAAGCAACGTTGGTAAGTTCTTTCTATCATAA
TGGAAAATAAACCTCGTGCACATAGTACAATTGACAACCAGAATGAAGTA
TGGATGGATATGAAAGGAGCCTGGTTGACATATGGTTTATCAGTGACATT
TCTTCATCTTTTGATTTTGAGTGTACCCATTTTTGCGACTGCTACTGCAT
GGACACTGACGAATGTCATTCATGATGTGGTATGTCATTGCGTCTTTGTC
CTTCAGTGTCCTTCAGACCTGTGAAACTCGTTCAAAATAAACCAATAAAC
CAGACCTCTTGCTTTGATAAGGCATAGGGGACTTTTAGAAAGAGTATGGA
AATAACTTTTGAATGGAACTAAAACCATTCCTTAACTATCAAGCTAAAAG
AATTGATTCCACTTTTCTCAATCATTTTGTAAACAATTGTTGCATGTGGA
AATGCTTTAATTAACTTTGCTGATATTTCTGTAATTTTTTATGTCAAAAT
AATTTTACTTCTGTATTTTTACAAAAATATCATGATTAGAAGCAAATGGG
TATGATCATTCAGGATCATTTGATTTTAATTTTTGTCAATTCTTTCTTAA
TTTTAGTTCAACTATTTTCTGTTACATCACTTGAAAGGAGCTCCCTTTGA
AACATATGATCAAGGACAATCCAGGCGTTTGACACACTGGGAGCAAATAG
ATGCTGGTGAAATGAATACAGGCACTAGAAAGTTTCTCACACTTGCACCC
ATTATCTTGTGAGTTTTCATCCAACAACTGTTTTACTCTACTTTCTTGAG
CCCACTTTATAAAATCTGCTCCCACTTGCTTCAATCACTGATCCTGTATG
CGCTGTATCTTGAAAGCATTTAATGATACCTGTTTCAGTCATTTATTTTA
ATGGATCCATTCTTGAATGTTGTAACGTTTTTGCACAAAAAAATGAGGCA
ATATCCTGTTTCAATATCCACAATATCCCTGTAACTTTAAACAATTTATT
AAAAGTTATCCTATCTTGGAATGGACTCTGTTTGTAGGGACATTGTTTTT
CATAGCATTGTTCCTTTTGCGGCCATCTATTATTGATTCAAGATTTTGTT
ATTTCTTCTGTTTTTTTTTAGGTTTATACTTGCAAGCTATTACTCACATT
ATAACGCAACGCATTTCATCATAAATCTGGCGGTCATGATGCTATGTCTA
ATACCCAAACTACCAACGTTTTACAAAGTGCGATTATTCGGTATCAATAA
ATATTAAAAGAAAAGAAAAAATTAAAAATATATATTGACAAAAATGGAGG
ATTTTTGATTGGAACAAACTGGAACAAAATTGAAAATCAGAAATTTATTA
GTTATTTTGTTAATTAGTGATGGATTCAAATGCAAAAACTATCAAAAACT
ACTTCTTTATGTCCAAATTCAATTTTTAAGTTAAAGCAGAAGATTCTGAA
ATTAGATTATGTGATTTTTTCTCAATTTCTGCCATGAAATGCGTCTCGGA
ACAGTAAATCAATAATTTTAGGTTTGAGTTTTTTAAGAAATTATTTTTTA
CTAAAATATCAATATATACCTTTTTTGTCACTTTTGTGATTTTGTAGTTC
ACATTCGGTTTAAAACTTTTTAGTACAAATGTTTTTTTTTAACGAAAAAG
TCTTTGATTTCCATCAACTTTTCTTGGCCTATTAAAGCAGTTGATTTATA
ATTTCAGCATTATGATAACGTCTTATTTTTCCCACGTTGTGTATATTATG
AATAATTTTTTTTAAACGATAGTAACTTGCATCACAGCAATAAGAACACT
GATATGTAGATCTTAGTCCACTGGATAGGTTATTAATACCACAAAGTGAA
TCCTTTTCATTTTCATATTATATCTATACGAAGTCGGCGTACTATAATGC
AGAAAACATGAATTCAGGCCTCTGTCTTGAAATGATCGTGTAACATCTAA
CATTGCTGAAAAATTTGACTTGAGATTCGGGGATGTAGCCGAAATTTCAG
ATTTAGTTCTGTAAAGTTTGGTGATATCAAACTACTTGATTTCCTTGCCG
ATCCAGTGGATTAAGATGGATTCAGTGAATCTGAACGACATTATACCTTT
AAAATTATTATTATTAAATGTCTTTTTGGATTATTTTAATAAATAAAATA
TAAGTAAATAACAGTATTACTAAAATGTATAATAGTTCGTTCGAGTGATT
GTCTCTCCTCATTTGTGGATGTTTATGGCAAATTATTACCCTTTCTCATT
ATATCCCCTCGTAGTAATCAACTTTATAGAAGCAATCAAATCTCTATAAA
GGCACCAAATTTTTATTTTAAAATTTTCCATTTTAGATATTGTATGGTCT
TATCTCGAATATTTTGATATTAATTTTCCCATTCTTGTTTTAGATTTCAG
CAATAAAAGTGTAAAAATATACAATTCAGTGCATGTCGATGTGTATT Coding sequence (CDS) from alignment at scaffold_462:889358..891904- >TCONS_00067020 ID=TCONS_00067020|Name=TCONS_00067020|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_462:889358..891904- (Clytia hemisphaerica)
GTTTATACTTGCAAGCTATTACTCACATTATAACGCAACGCATTTCATCA
TAAATCTGGCGGTCATGATGCTATGTCTAATACCCAAACTACCAACGTTT
TACAAAGTGCGATTATTCGGTATCAATAAATATTAATTCAACTATTTTCT
GTTACATCACTTGAAAGGAGCTCCCTTTGAAACATATGATCAAGGACAAT
CCAGGCGTTTGACACACTGGGAGCAAATAGATGCTGGTGAAATGAATACA
GGCACTAGAAAGTTTCTCACACTTGCACCCATTATCTTATGGAAAATAAA
CCTCGTGCACATAGTACAATTGACAACCAGAATGAAGTATGGATGGATAT
GAAAGGAGCCTGGTTGACATATGGTTTATCAGTGACATTTCTTCATCTTT
TGATTTTGAGTGTACCCATTTTTGCGACTGCTACTGCATGGACACTGACG
AATGTCATTCATGATGTGGTTTATACTTGCAAGCTATTACTCACATTATA
ACGCAACGCATTTCATCATAAATCTGGCGGTCATGATGCTATGTCTAATA
CCCAAACTACCAACGTTTTACAAAGTGCGATTATTCGGTATCAATAAATA
TTAATTCAACTATTTTCTGTTACATCACTTGAAAGGAGCTCCCTTTGAAA
CATATGATCAAGGACAATCCAGGCGTTTGACACACTGGGAGCAAATAGAT
GCTGGTGAAATGAATACAGGCACTAGAAAGTTTCTCACACTTGCACCCAT
TATCTTATGGAAAATAAACCTCGTGCACATAGTACAATTGACAACCAGAA
TGAAGTATGGATGGATATGAAAGGAGCCTGGTTGACATATGGTTTATCAG
TGACATTTCTTCATCTTTTGATTTTGAGTGTACCCATTTTTGCGACTGCT
ACTGCATGGACACTGACGAATGTCATTCATGATGTGGTTTATACTTGCAA
GCTATTACTCACATTATAACGCAACGCATTTCATCATAAATCTGGCGGTC
ATGATGCTATGTCTAATACCCAAACTACCAACGTTTTACAAAGTGCGATT
ATTCGGTATCAATAAATATTAATTCAACTATTTTCTGTTACATCACTTGA
AAGGAGCTCCCTTTGAAACATATGATCAAGGACAATCCAGGCGTTTGACA
CACTGGGAGCAAATAGATGCTGGTGAAATGAATACAGGCACTAGAAAGTT
TCTCACACTTGCACCCATTATCTTATGGAAAATAAACCTCGTGCACATAG
TACAATTGACAACCAGAATGAAGTATGGATGGATATGAAAGGAGCCTGGT
TGACATATGGTTTATCAGTGACATTTCTTCATCTTTTGATTTTGAGTGTA
CCCATTTTTGCGACTGCTACTGCATGGACACTGACGAATGTCATTCATGA
TGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067020-exon-scaffold_462-1575043694:891576..891904 | TCONS_00067020-exon-scaffold_462-1575043694:891576..891904 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1575043694:891047..891198 | TCONS_00067020-exon-scaffold_462-1575043694:891047..891198 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1575043694:889358..890683 | TCONS_00067020-exon-scaffold_462-1575043694:889358..890683 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1510915933:891576..891904 | TCONS_00067020-exon-scaffold_462-1510915933:891576..891904 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1510915933:891047..891198 | TCONS_00067020-exon-scaffold_462-1510915933:891047..891198 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1510915933:889358..890683 | TCONS_00067020-exon-scaffold_462-1510915933:889358..890683 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1491911889:891576..891904 | TCONS_00067020-exon-scaffold_462-1491911889:891576..891904 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1491911889:891047..891198 | TCONS_00067020-exon-scaffold_462-1491911889:891047..891198 | Clytia hemisphaerica | exon |
| TCONS_00067020-exon-scaffold_462-1491911889:889358..890683 | TCONS_00067020-exon-scaffold_462-1491911889:889358..890683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:889358..891904 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007203 | ORMDL |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0005789 | endoplasmic reticulum membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005789 |
endoplasmic reticulum membrane |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00067020 vs. Swiss-Prot (Human)
Match: ORML1 (ORM1-like protein 1 OS=Homo sapiens GN=ORMDL1 PE=1 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 2.044e-48 Identity = 78/146 (53.42%), Postives = 106/146 (72.60%), Query Frame = 3
Query: 168 AHSTIDNQNEVWMDMKGAWLTYGLSVTFLHLLILSVPIFATATAWTLTNVIHDVFNYFLLHHLKGAPFETYDQGQSRRLTHWEQIDAGEMNTGTRKFLTLAPIILFILASYYSHYNATHFIINLAVMMLCLIPKLPTFYKVRLFGI 605
AHS + N N M+ +G WLTY L V LH+++LS+P F+ AWTLTN+IH++ Y LH +KG PFET DQG++R LTHWEQ+D G T +RKF T++PIIL+ LAS+Y+ Y+ THFI+N A ++ LIPK+P + VR+FGI
Sbjct: 6 AHSEV-NPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGMYVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFILNTASLLSVLIPKMPQLHGVRIFGI 150
The following BLAST results are available for this feature:
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