TCONS_00067019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067019
Unique NameTCONS_00067019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067019 ID=TCONS_00067019|Name=TCONS_00067019|organism=Clytia hemisphaerica|type=transcript|length=275bp
ATCAAAATGAAAAGCTTTTAAGAAGTCCTATCTTACGGTCGTTTAGATGA
AATGAACCATGACAGCACCGTTCCAATACGGTTTATTTGAATGTCTTCAT
GACAAAGATATCTGTTTGGTGACTTCAGTGTTACCGTGTTTCACGCTCAG
CCAGAGTGCACAAGTTGTGGGAGCTGATACAACAACGCATGCCATTGGCT
GTTGCTCTTGTCTTTATTGGTTTTTCATTGGTAGAATAAGAAAAGCCATT
CGAGAAAGATATGGTATTAAGGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_462:888477..889011-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067019 ID=TCONS_00067019|Name=TCONS_00067019|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_462:888477..889011- (Clytia hemisphaerica)
ATCAAAATGAAAAGCTTTTAAGAAGTCCTATCTTACGGTCGTTTAGATGA
AATGGTAATAGACTTTCTATAATGCCTAGTTCATTCTCGGCTTGGCAATG
TTATATTAATATAATAAGAAATAATAGTCTTTTAATGTATTATAGATGAG
ATTATTAGATGAGTTTCTTTTTAATTTGAATTTCTTCTAATTCTAAGAGA
AAGGTTTGAATGATGGAGAGACCCTTATAGAAAGGTTTCAGGCAAAGGGT
GATTGTTTTTTTTTGGGGATAATAAAAATACTAGCAGAATGACCAATATC
TTTCTTTATCTTAGAACCATGACAGCACCGTTCCAATACGGTTTATTTGA
ATGTCTTCATGACAAAGATATCTGTTTGGTGACTTCAGTGTTACCGTGTT
TCACGCTCAGCCAGAGTGCACAAGTTGTGGGAGCTGATACAACAACGCAT
GCCATTGGCTGTTGCTCTTGTCTTTATTGGTTTTTCATTGGTAGAATAAG
AAAAGCCATTCGAGAAAGATATGGTATTAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041860XLOC_041860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067019-exon-scaffold_462-1575043694:888958..889011TCONS_00067019-exon-scaffold_462-1575043694:888958..889011Clytia hemisphaericaexon
TCONS_00067019-exon-scaffold_462-1575043694:888477..888697TCONS_00067019-exon-scaffold_462-1575043694:888477..888697Clytia hemisphaericaexon
TCONS_00067019-exon-scaffold_462-1510915933:888958..889011TCONS_00067019-exon-scaffold_462-1510915933:888958..889011Clytia hemisphaericaexon
TCONS_00067019-exon-scaffold_462-1510915933:888477..888697TCONS_00067019-exon-scaffold_462-1510915933:888477..888697Clytia hemisphaericaexon
TCONS_00067019-exon-scaffold_462-1491911889:888958..889011TCONS_00067019-exon-scaffold_462-1491911889:888958..889011Clytia hemisphaericaexon
TCONS_00067019-exon-scaffold_462-1491911889:888477..888697TCONS_00067019-exon-scaffold_462-1491911889:888477..888697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:888477..889011 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (33.5144 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.528573	1.03088	0	0	2.85124	0	0	0	1.33625	0.551722	0	0.352027	14.0615	16.4284	0.900423	1.28839	2.77758	2.84693	26.4086	33.5144	4.59949	2.24347	0.606051	1.65297	0	3.54539	0	0	0.586675	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
ATCAAAATGAAAAGCTTTTAAGAAGTCCTATCTTACGGTCGTTTAGATGAAATGAACCATGACAGCACCGTTCCAATACGGTTTATTTGAATGTCTTCATGACAAAGATATCTGTTTGGTGACTTCAGTGTTACCGTGTTTCACGCTCAGCCAGAGTGCACAAGTTGTGGGAGCTGATACAACAACGCATGCCATTGGCTGTTGCTCTTGTCTTTATTGGTTTTTCATTGGTAGAATAAGAAAAGCCATTCGAGAAAGATATGGTATTAAGGTAA20406080100120140160180200220240260Sequence
Match NameE-valueIdentityDescription
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