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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066992 ID=TCONS_00066992|Name=TCONS_00066992|organism=Clytia hemisphaerica|type=transcript|length=1408bp
ttttaaggataaaaaagGAAAACTGAATCTTaggaaaaatacaaatattt
gTAGAAAGTATACAATACAATGGTTTTTGTACGAGctacccatgttttga
agaaaactaCTGCAGACCTTTACAAACCATTAATAAGAGGTATCCTGATC
CGGTCTGCAAGCACCACAGCACAAGATAATACTATTAAATACAACAAAGA
AATTGTCATCAAAAATGTGGATGAATCTCAAGAATCTCCTTTAGTAGTCA
TCATTGGGTGGAGTAACAGTAATTTACGGCAAATTGAAAAATACAGTCAA
ATTTATGAAGATCTTGGATGTACTGTTGTATCCTCTTCCATGCAGTTGTA
TCGGTTCTCAATGTTTTATGATACACTTTTTGCTCAGGACACacaaaatg
tcatcaatgctatGACTACACAACGTAATTTCAACACAAGCCGTAAagta
tttttcaagttgttcaGCACACCAGGTCCAGCAATGTATGTCAACATAAT
GAATTATTATTTCCCATATATCGAGCAACATTTTGGTACAGTGCCTAAAT
TTCAATTGAGTGAAGATGAAACAAAACCTAATATTTGTGGTGTCATTTAT
GATTCTGCAACAGTTGAATCTGGTAATGCCCATCAATTTGCAAATGGTAT
GCGTGGCAACTCGACTGGTGTTCTAAGTAATATGGTTTTCAATGTTCTTG
GCAAAATGGTATATGCTTATGCAGTACGCACGTCTAAAATGCATAATTAC
GGTCCTGAGTTTTTACGTAATATCCCAGTCATGTTACCACAAATGTTTTT
ATcttctgaaaatgataaaatagcTTCGATTGAGAGTGTAAGAAATTTTG
TTGAACACCAGAAAGAAATGGGTGTTCCATTGTTGAAATCGAAAGTTTGG
GAAAATTCTGATCACGTGTTACATTACCGTAAATATCCAGAGGAATACAA
GGCCTTGGTCGATGGATTCATGAAAGAATGCCTTGATTTGTCTCAAGTAC
AAACAACagagaaaaaagaaagtgtagttgccgaaaataaaaaacaagtt
cACCACCAAGTAgaaatttaatcaaactttgaacTATTTTTTATGGAAGC
TGACCCGGCTGTCACCTTTTGTCGCATCGAAAAGGATTGTTTTAAAtcct
aaaaaatcaaaaatgataattactgtagtgttggaaattttgaatttaat
ttatatGTATGAAAAATTGGATATTACATATTGGATTTCTAGATAATATG
AAGTCTCCAGAAGACCTGAACCAAATATAAACTTGATGTTTTATATGGAG
ATGATTCGATTGAGATAAACAATTTCTTGAACTTTCTATGCATGCAAACA
ACAAGGTAGcaaaaattatgagaaaaaatgaactttacaCTGATGAACTT
TATTGAAA Run BLAST on NCBI protein sequence of TCONS_00066992-protein >TCONS_00066992-protein ID=TCONS_00066992-protein|Name=TCONS_00066992-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MVFVRATHVLKKTTADLYKPLIRGILIRSASTTAQDNTIKYNKEIVIKNV
DESQESPLVVIIGWSNSNLRQIEKYSQIYEDLGCTVVSSSMQLYRFSMFY
DTLFAQDTQNVINAMTTQRNFNTSRKVFFKLFSTPGPAMYVNIMNYYFPY
IEQHFGTVPKFQLSEDETKPNICGVIYDSATVESGNAHQFANGMRGNSTG
VLSNMVFNVLGKMVYAYAVRTSKMHNYGPEFLRNIPVMLPQMFLSSENDK
IASIESVRNFVEHQKEMGVPLLKSKVWENSDHVLHYRKYPEEYKALVDGF
MKECLDLSQVQTTEKKESVVAENKKQVHHQVEI Run BLAST on NCBI transcript from alignment at scaffold_462:663165..666102- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066992 ID=TCONS_00066992|Name=TCONS_00066992|organism=Clytia hemisphaerica|type=transcript|length=2938bp|location=Sequence derived from alignment at scaffold_462:663165..666102- (Clytia hemisphaerica)
TTTTAAGGATAAAAAAGGAAAACTGAATCTTAGGAAAAATACAAATATTT
GTAGAAAGTATACAATACAATGGTTTTTGTACGAGGTATAATTTCCATAC
TTTATTAACACTGAATACACCTATCAACTTTTAGCGACACGATCAGCTTT
TTAGGGAACTGGTAATGAATTTACAAGGAAGATATTTTTGTTACCAGCCT
TCTTCGCTCCGCTCTGTATTTATAAGTGTATTGAAAATTGCTTACCTTCT
CCCTACCTTGTTTTTTTTCTAAGCCTGTTCTTTTACATACAGTCTGGAAT
GATAACCAACCTATGAAAATTCTTTTAAAATCTTACGTACTGAACATAAA
GCGAAGGGATTTTACTTCATTCTTTATCACAGAGCTTTTTTTAATTTTTA
GCTACCCATGTTTTGAAGAAAACTACTGCAGACCTTTACAAACCATTAAT
AAGAGGTATCCTGATCCGGTCTGCAAGCACCACAGCACAAGATAATACTA
TTAAATACAACAAAGAAATTGTCATCAAAAATGTGGATGAATCTCAAGAA
TCTCCTTTAGTAGTCATCATTGGGTGGAGTAACAGTAATTTACGGCAAAT
TGAAAAATACAGTCAAATTTATGAAGATCTTGGATGTACTGTTGTATCCT
CTTCCATGCAGTTGTATCGGTTCTCAATGTTTTATGATACACTTTTTGCT
CAGGACACACAAAATGTCATCAATGCTATGACTACACAACGTAATTTCAA
CACAAGCCGTAAAGTATTTTTCAAGTTGTTCAGCACACCAGGTCCAGCAA
TGTATGTCAACATAATGAATTATTATTTCCCATATATCGAGCAACATTTT
GGTACAGTGCCTAAATTTCAATTGAGTGAAGATGAAACAAAACCTAATAT
TTGTGGTGTCATTTATGATTCTGCAACAGTTGAATCTGGTAATGCCCATC
AATTTGCAAATGGTATGCGTGGCAACTCGACTGGTGTTCTAAGTAATATG
GTTTTCAATGTTCTTGGCAAAATGGTATATGCTTATGCAGTACGCACGTC
TAAAATGCATAATTACGGTCCTGAGTTTTTACGTAATATCCCAGTCATGT
TACCACAAATGTTTTTATCTTCTGAAAATGATAAAATAGCTTCGATTGAG
AGTGTAAGAAATTTTGTTGAACACCAGAAAGAAATGGGTGTTCCATTGTT
GAAATCGAAAGTTTGGGAAAATTCTGATCACGTGTTACATTACCGTAAAT
ATCCAGAGGAATACAAGGCCTTGGTCGATGGATTCATGAAAGAATGCCTT
GATTTGTCTCAAGTACAAACAACAGAGAAAAAAGAAAGTGTAGTTGCCGA
AAATAAAAAACAAGTTCACCACCAAGTAGAAATTTAATCAAACTTTGAAC
TATTTTTTATGGAAGCTGACCCGGCTGTCACCTTTTGTCGCATCGAAAAG
GATTGTTTTAAATCCTAAAAAATCAAAAATGATAATTACTGTAGTGTTGG
AAATTTTGAATTTAATTTATATGTATGAAAAATTGGATATTACATATTGG
ATTTCTAGATAATATGAAGTCTCCAGAAGACCTGAACCAAATATAAACTT
GATGTTTTATATGGAGATGATTCGATTGAGATAAACAATTTCTTGAACTT
TCTATGCATGCAAACAACAAGGTAGGTAGGTAGAATTATTACAAAATACT
TTTCTCTCTACTTTCTTTAATAAAAACCATAATTTCGTATCACGGTCTTC
AATTTTAGCAATGTATCGAAATATTCAAATCTTACCAAGAGGTAGGCTTT
CATCAGTTTTATTCCCATCACAAGAGTTGTCAATGTCAATATAATAGAGA
CTGTCGGTTGATTTAAAAGGGTTGGTTTAGGGGGATTTCTGACAGAAAGA
TTTCCTTGGGAAGCTGAGAAATGTTTCATCTGCAATAGATGGACTATTGC
TTTTCAAAGGCACTGTCTATTTTATAACTCATACAATTTCTAATTTTATA
CATTAACATTAGAAGGTTTCTCTAGTTTGTATTTTCAAATTGTTCTATAT
AATCAAGCTTTCAAAACATTGTAATTTTTTAGTATCATTTTCATAGAGTA
AGTTGGTATATATATTTTTGTGGTAATTTTAGGAAAATATTATAATTATG
AATCTTTTGGAGAAAATTACATTTAAAACTGAAATTACAGTTCTGATGTT
TTGAAATTTAGAATAGTCTATTCAAGCTATCTTTTCATCTTTTGCTGAGG
AAATCCAAACCAAGGGATGTGTGACCTTTGAGTTATAAGATAATGATTGA
ACCTCTATGGTATTGTGAATATTGAGGGTTGAGGATTACTTTAATTGGAT
TTATTTCCGCAAGATTTAATATTTTTGCCATTTTCGCGAAAATAAAACTA
GCAAATTAAATTTTCGAAAACAAATGGTTTTTAACTTAAAATACACTTGT
AAGTAAGCTCCTTTTGACGTTTAAAGGACCAAGTTTTTACCTGTTTCGCG
AAATTTAATACACACAAAAGTTTTTCAAAAGGTTGATATGCAAAAGAAAA
TTCAGAAAATTTCGCGAATTCTGTTGTTCGCGAAATGAAATCTCATTTGA
AACTTACCTTTACCTTACCTCAAAGCCTACTTTTTCGTGGAAAATTTTAT
TTTAAGTTATACATAGATCTAGCTGAAGTCCCTTGCCAGGGTTGAATACT
GTAGTCTGGGAATTTTTCCAAGAAAGCTTTAGTCCCCATAACCTCTAAAA
GGCCCGAAGTTTAAGGACATTTCCAACGAAATATCCCCAGATTCTTCATC
CACGCGAAAAGAAACCTTTTTATCAAAAATTTTTCTTGGTAAGGAAAGGT
TTATCCTAAGCTAAATTGTATTGAATTTTTATTTTCCAGCAAAAATTATG
AGAAAAAATGAACTTTACACTGATGAACTTTATTGAAA Coding sequence (CDS) from alignment at scaffold_462:663165..666102- >TCONS_00066992 ID=TCONS_00066992|Name=TCONS_00066992|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_462:663165..666102- (Clytia hemisphaerica)
CTACCCATGTTTTGAAGAAAACTACTGCAGACCTTTACAAACCATTAATA
AGAGGTATCCTGATCCGGTCTGCAAGCACCACAGCACAAGATAATACTAT
TAAATACAACAAAGAAATTGTCATCAAAAATGTGGATGAATCTCAAGAAT
CTCCTTTAGTAGTCATCATTGGGTGGAGTAACAGTAATTTACGGCAAATT
GAAAAATACAGTCAAATTTATGAAGATCTTGGATGTACTGTTGTATCCTC
TTCCATGCAGTTGTATCGGTTCTCAATGTTTTATGATACACTTTTTGCTC
AGGACACACAAAATGTCATCAATGCTATGACTACACAACGTAATTTCAAC
ACAAGCCGTAAAGTATTTTTCAAGTTGTTCAGCACACCAGGTCCAGCAAT
GTATGTCAACATAATGAATTATTATTTCCCATATATCGAGCAACATTTTG
GTACAGTGCCTAAATTTCAATTGAGTGAAGATGAAACAAAACCTAATATT
TGTGGTGTCATTTATGATTCTGCAACAGTTGAATCTGGTAATGCCCATCA
ATTTGCAAATGGTATGCGTGGCAACTCGACTGGTGTTCTAAGTAATATGG
TTTTCAATGTTCTTGGCAAAATGGTATATGCTTATGCAGTACGCACGTCT
AAAATGCATAATTACGGTCCTGAGTTTTTACGTAATATCCCAGTCATGTT
ACCACAAATGTTTTTATCTTCTGAAAATGATAAAATAGCTTCGATTGAGA
GTGTAAGAAATTTTGTTGAACACCAGAAAGAAATGGGTGTTCCATTGTTG
AAATCGAAAGTTTGGGAAAATTCTGATCACGTGTTACATTACCGTAAATA
TCCAGAGGAATACAAGGCCTTGGTCGATGGATTCATGAAAGAATGCCTTG
ATTTGTCTCAAGTACAAACAACAGAGAAAAAAGAAAGTGTAGTTGCCGAA
AATAAAAAACAAGTTCACCACCAAGTAGAAATTTAAATGGTTTTTGTACG
AGCTACCCATGTTTTGAAGAAAACTACTGCAGACCTTTACAAACCATTAA
TAAGAGGTATCCTGATCCGGTCTGCAAGCACCACAGCACAAGATAATACT
ATTAAATACAACAAAGAAATTGTCATCAAAAATGTGGATGAATCTCAAGA
ATCTCCTTTAGTAGTCATCATTGGGTGGAGTAACAGTAATTTACGGCAAA
TTGAAAAATACAGTCAAATTTATGAAGATCTTGGATGTACTGTTGTATCC
TCTTCCATGCAGTTGTATCGGTTCTCAATGTTTTATGATACACTTTTTGC
TCAGGACACACAAAATGTCATCAATGCTATGACTACACAACGTAATTTCA
ACACAAGCCGTAAAGTATTTTTCAAGTTGTTCAGCACACCAGGTCCAGCA
ATGTATGTCAACATAATGAATTATTATTTCCCATATATCGAGCAACATTT
TGGTACAGTGCCTAAATTTCAATTGAGTGAAGATGAAACAAAACCTAATA
TTTGTGGTGTCATTTATGATTCTGCAACAGTTGAATCTGGTAATGCCCAT
CAATTTGCAAATGGTATGCGTGGCAACTCGACTGGTGTTCTAAGTAATAT
GGTTTTCAATGTTCTTGGCAAAATGGTATATGCTTATGCAGTACGCACGT
CTAAAATGCATAATTACGGTCCTGAGTTTTTACGTAATATCCCAGTCATG
TTACCACAAATGTTTTTATCTTCTGAAAATGATAAAATAGCTTCGATTGA
GAGTGTAAGAAATTTTGTTGAACACCAGAAAGAAATGGGTGTTCCATTGT
TGAAATCGAAAGTTTGGGAAAATTCTGATCACGTGTTACATTACCGTAAA
TATCCAGAGGAATACAAGGCCTTGGTCGATGGATTCATGAAAGAATGCCT
TGATTTGTCTCAAGTACAAACAACAGAGAAAAAAGAAAGTGTAGTTGCCG
AAAATAAAAAACAAGTTCACCACCAAGTAGAAATTTAAATGGTTTTTGTA
CGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066992-exon-scaffold_462-1575043694:666018..666102 | TCONS_00066992-exon-scaffold_462-1575043694:666018..666102 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1575043694:664428..665701 | TCONS_00066992-exon-scaffold_462-1575043694:664428..665701 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1575043694:663165..663213 | TCONS_00066992-exon-scaffold_462-1575043694:663165..663213 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1510915933:666018..666102 | TCONS_00066992-exon-scaffold_462-1510915933:666018..666102 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1510915933:664428..665701 | TCONS_00066992-exon-scaffold_462-1510915933:664428..665701 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1510915933:663165..663213 | TCONS_00066992-exon-scaffold_462-1510915933:663165..663213 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1491911889:666018..666102 | TCONS_00066992-exon-scaffold_462-1491911889:666018..666102 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1491911889:664428..665701 | TCONS_00066992-exon-scaffold_462-1491911889:664428..665701 | Clytia hemisphaerica | exon |
| TCONS_00066992-exon-scaffold_462-1491911889:663165..663213 | TCONS_00066992-exon-scaffold_462-1491911889:663165..663213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:663165..666102 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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