TCONS_00066984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066984
Unique NameTCONS_00066984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066984 ID=TCONS_00066984|Name=TCONS_00066984|organism=Clytia hemisphaerica|type=transcript|length=2089bp
GGTCAGGATATTATATATTTCCGTATTGTAAGATATTCATACAGTTGTGA
TTTCCGTGATTAGCTTGTTTGTAAGATTATTCAATTGTCCTAAAACCATT
CCATTGTCTTTAGAATTCTATTGTTGACCTGACCTAAATTATTAgcataa
aagaaacatgtatgAACTTAAAAATCACACATAAACAGTGAAACCATCTA
AAGAATTGGCTAACCACCAGTGATGAACTCGATAGTGGTACTGATCAGTC
TTGCGCTTTTGAACTCTGTTTCCGCATTCTTTCCGGTAAAAATCACCGGA
CCTACCCCACCACCAGTACCATGCTACAACAGTCAATGTAACGGAAAACC
CGATGGTAACTTTGAATATATTACTGTAACCCAAAAACATACAAGAAGAT
CCAACATTATTTCTTACAATGTAGTGATGGAGTAGCCTCTTGTCAAGCAT
GTTGGCCATCCAGTCTAGTCTTCAAAGAGGATTGCAACCAATGTCTTTAT
TCTCAACATGACGAATGTGTTACATCTAAACCGTTCAAACCAGCCACAAC
TTTCGGATGTCCAGATATATGTCCACAACAAGGTCCGAAATTTTCTGGAA
ACATTAACGATCCGGACCAACCAAGACAGTATGTAGCATGTTGGAAGGGT
GTTACCGTCGGGTGTGTTTCTTGTCCTCCTAAATTGGTTTTTAACAGACG
TTGGAATGCATTTCTTCATTCAGGTGGATTCAAACAAATTCCACCAGGTC
TTACAGATTTGGATTATCCACCTTACGGAAAGTAAGCCAAATGGTTAAAG
AATAAAGAACTGTTTTTGTATAAATAGTGTGTCTGGAAAAAAAACGGAAC
AGAAACTTCATAATATCTATGAATTTCTATGACctaatttcttgatttct
ttttcaaaaaaccaaACTTTACTTACACCTTAAAAATTTAGATATCTTTC
AGTCCAATAAAGAAATTCTAAACTAATTTCAACCATTTAACAACATACTT
CAGTGAGATAATCACTTTGGACGATTTTAGGCTCCGCTTTTTACTAAAAG
ACTGTTTTTATTGAACCAATTGGAATTTATTAGCACGGCGTTTAAAACGT
GAAAAATTAATCAGTTTTGTTCTTTTCATAGTTTGctgtaaaggcttggg
gacacgagaagttttttcgcgttgatgcaatgcaacatgctccatcccac
caacacaagaaaataagtgCGTGtttcatggtttctttttttgtttcatg
ggataaaaagtgagggaaatacccaaaagacacgctgattttgtcgctgg
gacaaaagtgagagagacataaatgttattaaaagaaaaatggggtggag
acacgagaaagcgtttcaggttggtgggatggatcatgttgcattgcacc
aacgcgaacaaaacttctcgtgtccccaagccttaacacTACACCTTTTT
CTCAGACATGCATTTGACTGACCTCATGTGTAGACATGGTCTTTATAGCC
TTTGGATTTGCATCCCAGCCAAACTTTCATGACTTAGGGTCCCAGCATAT
CATTATTGGCAATGTAATTGTttaacttttgagttttattcacaacccct
tctcaaagacccacttggaacccttcccactggaaaaattggccaaaata
tcgtccccggtggaaaattatcctctaatttttgtccccactgaaaataa
tcaaacaaaccaatcctcactgaaaatatttactatttttcccatcccca
ctgaattttatgacttgaaaacaaaaaaattgaaatcttcaagtcataaa
aaaatatggGAGTATCTATCCCCATCGAGTTTAAGATGGTTTAAGTCTGT
TATTTTTaaccccactggctgaaaaaaatcctaccgggggtctgtgagaa
gggggtgtttacaCCGTTTGATATCGTtgctatacacgtttttttataag
aacacccaaaTTTTTCAAGCCTTCAATAAGTACTTAAAACttattgagtt
ttaagcctaacaaTGTTCTCAAAATGgtcttaaagtctattcacgataag
tgtgcactcttttttcttttacctataacttttgaaaga
Run BLAST on NCBI

transcript from alignment at scaffold_462:409742..412343-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066984 ID=TCONS_00066984|Name=TCONS_00066984|organism=Clytia hemisphaerica|type=transcript|length=2602bp|location=Sequence derived from alignment at scaffold_462:409742..412343- (Clytia hemisphaerica)
GGTCAGGATATTATATATTTCCGTATTGTAAGATATTCATACAGTTGTGA
TTTCCGTGATTAGCTTGTTTGTAAGATTATTCAATTGTCCTAAAACCATT
CCATTGTCTTTAGAATTCTATTGTTGACCTGACCTAAATTATTAGCATAA
AAGAAACATGTATGAACTTAAAAATCACACATAAACAGTGAAACCATCTA
AAGAATTGGCTAACCACCAGTGATGAACTCGATAGTGGTACTGATCAGTC
TTGCGCTTTTGAACTGTAAGTATTTTCATTCAATTTCTTTTGTATTTCTT
GATACCCGTATAACNTTCAATTTCTTTTTTATTTCTTGATATCCGTAGTG
CACTACTACCAGTACTTGATAGTCTTTTACCTCTACGACTGAAGATCCTA
TCTCTTATATTTCATTTTTCTTTTCACGCTCTTGACTATATTTCTAACAA
ATTTTCTTCAAACATACTTGCAACGAATCTAAGAAATATTTCTCATTATT
TTAAAAAGTATTTTTCAACAGATGAATGCAATATCATCTTGCAAGACGAA
CTGATTTTCTCATTTCCTATTTTTTTCATTTCTTATTTCCCAGCTGTTTC
CGCATTCTTTCCGGTAAAAATCACCGGACCTACCCCACCACCAGTACCAT
GCTACAACAGTCAATGTAACGGAAAACCCGATGGTAACTTTGAATATATT
ACTGTAACCCAAAAACATACAAGAAGATCCAACATTATTTCTTACAATGT
AGTGATGGAGTAGCCTCTTGTCAAGCATGTTGGCCATCCAGTCTAGTCTT
CAAAGAGGATTGCAACCAATGTCTTTATTCTCAACATGGTAAGAAAAAAT
CTTAAGTTTGTTTAATCGTTTTAAAGAAAAAGAAATAAGGGGAACTGCCA
AAAGAAACCCAGCCAGATTTGTGTCCAAATTCTTGACTTTTAGTTAATCC
TATCCATGCTGATGTATGTCGGATACTGTATAAAACATTTTGACAAAGAG
TATTTTCGACCACTATTTTTCAGACGAATGTGTTACATCTAAACCGTTCA
AACCAGCCACAACTTTCGGATGTCCAGATATATGTCCACAACAAGGTCCG
AAATTTTCTGGAAACATTAACGATCCGGACCAACCAAGACAGTATGTAGC
ATGTTGGAAGGGTGTTACCGTCGGGTGTGTTTCTTGTCCTCCTAAATTGG
TTTTTAACAGACGTTGGAATGCATTTCTTCATTCAGGTGGATTCAAACAA
ATTCCACCAGGTCTTACAGATTTGGATTATCCACCTTACGGAAAGTAAGC
CAAATGGTTAAAGAATAAAGAACTGTTTTTGTATAAATAGTGTGTCTGGA
AAAAAAACGGAACAGAAACTTCATAATATCTATGAATTTCTATGACCTAA
TTTCTTGATTTCTTTTTCAAAAAACCAAACTTTACTTACACCTTAAAAAT
TTAGATATCTTTCAGTCCAATAAAGAAATTCTAAACTAATTTCAACCATT
TAACAACATACTTCAGTGAGATAATCACTTTGGACGATTTTAGGCTCCGC
TTTTTACTAAAAGACTGTTTTTATTGAACCAATTGGAATTTATTAGCACG
GCGTTTAAAACGTGAAAAATTAATCAGTTTTGTTCTTTTCATAGTTTGCT
GTAAAGGCTTGGGGACACGAGAAGTTTTTTCGCGTTGATGCAATGCAACA
TGCTCCATCCCACCAACACAAGAAAATAAGTGCGTGTTTCATGGTTTCTT
TTTTTGTTTCATGGGATAAAAAGTGAGGGAAATACCCAAAAGACACGCTG
ATTTTGTCGCTGGGACAAAAGTGAGAGAGACATAAATGTTATTAAAAGAA
AAATGGGGTGGAGACACGAGAAAGCGTTTCAGGTTGGTGGGATGGATCAT
GTTGCATTGCACCAACGCGAACAAAACTTCTCGTGTCCCCAAGCCTTAAC
ACTACACCTTTTTCTCAGACATGCATTTGACTGACCTCATGTGTAGACAT
GGTCTTTATAGCCTTTGGATTTGCATCCCAGCCAAACTTTCATGACTTAG
GGTCCCAGCATATCATTATTGGCAATGTAATTGTTTAACTTTTGAGTTTT
ATTCACAACCCCTTCTCAAAGACCCACTTGGAACCCTTCCCACTGGAAAA
ATTGGCCAAAATATCGTCCCCGGTGGAAAATTATCCTCTAATTTTTGTCC
CCACTGAAAATAATCAAACAAACCAATCCTCACTGAAAATATTTACTATT
TTTCCCATCCCCACTGAATTTTATGACTTGAAAACAAAAAAATTGAAATC
TTCAAGTCATAAAAAAATATGGGAGTATCTATCCCCATCGAGTTTAAGAT
GGTTTAAGTCTGTTATTTTTAACCCCACTGGCTGAAAAAAATCCTACCGG
GGGTCTGTGAGAAGGGGGTGTTTACACCGTTTGATATCGTTGCTATACAC
GTTTTTTTATAAGAACACCCAAATTTTTCAAGCCTTCAATAAGTACTTAA
AACTTATTGAGTTTTAAGCCTAACAATGTTCTCAAAATGGTCTTAAAGTC
TATTCACGATAAGTGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAAA
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041850XLOC_041850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066984-exon-scaffold_462-1575043694:412079..412343TCONS_00066984-exon-scaffold_462-1575043694:412079..412343Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1575043694:411506..411750TCONS_00066984-exon-scaffold_462-1575043694:411506..411750Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1575043694:409742..411320TCONS_00066984-exon-scaffold_462-1575043694:409742..411320Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1510915933:412079..412343TCONS_00066984-exon-scaffold_462-1510915933:412079..412343Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1510915933:411506..411750TCONS_00066984-exon-scaffold_462-1510915933:411506..411750Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1510915933:409742..411320TCONS_00066984-exon-scaffold_462-1510915933:409742..411320Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1491911889:412079..412343TCONS_00066984-exon-scaffold_462-1491911889:412079..412343Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1491911889:411506..411750TCONS_00066984-exon-scaffold_462-1491911889:411506..411750Clytia hemisphaericaexon
TCONS_00066984-exon-scaffold_462-1491911889:409742..411320TCONS_00066984-exon-scaffold_462-1491911889:409742..411320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:409742..412343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35038	0.246391	0.356349	0.259997	0.597304	0.570471	1.60975	1.83743	0.762935	0.801395	1.02497	1.13142	2.90926	4.29587	14.3633	4.51829	0.573167	0.57155	1.44512	1.47155	0.825588	0.725682	1.44137	1.46841	3.65537	1.91974	0.40319	0.324511	1.34337	1.71476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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