TCONS_00066982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066982
Unique NameTCONS_00066982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066982 ID=TCONS_00066982|Name=TCONS_00066982|organism=Clytia hemisphaerica|type=transcript|length=2382bp
aaagagtgCAAGCTTAGCttgtgaaatttgaattttaaagaaaaattcaa
aagcgTTGATACATAATTCGTCAATCTTCAATTTCTTCAAAGGCGagcaa
ttattttgaaaaaggtgATAAGGTGACATGACAGGGACAACCACTTTAGA
GAAAAGTGAAGAATACAAAAAATGGACAAAGCTACTCAAGAAAACAACCT
ACTTTTCTTATCTTCTCATTTTTCTTGGTGGTTTGGAAATCAATGCTGTC
CAAATTTCAATGTTATATtatttggaagaaagttttaaaatgacTCCAGA
CGAAGTAAGGCTAAATTTCAGTGTAGCTGAAGCGTTTAATGCTTTAGGTC
AACTTTTTAGTGGGTTATTGATTGGACGTTATATGGACAGAACAAGGAAT
CTAAAATTATCCTGTTTATCGATTTTATGTGCTACCATCGTTGGGAATTT
GTTATATTCCTTACCCGTTCACATTTCGTTTATCGTGATTGGACGATTTT
TATGTGGCTTCAATGAGGCGTTCCAAGTTACTTTATGTGGcgaattcaaa
aaatgttatcaTAAAGAAGACGAGTTGATCCAAGTTTTGAGTTGGTATGA
ACTCTTCTTCGCCGTTGGTATGGCTACTGGACCTGGTGCACCAGTCTTTT
TCTCGTGGGtgaatttgaaaattgGTGGATGGATGATCAATAAATACAAT
GCATTACACGTATTCCTTGTAGTCATGTTAGCCCTTTTGTTCATCATATT
ATGGTTCCAACTCACTGATCTATCAAAAGACCTGGATCGTATGAGAGAGA
AATTCAACACTATGTCAAAATCTTCCCATGATGAACAAGCATTAGAGAAA
AGatctaaaaaaataaacagcGGAAAGGACCGTTTAACTACTGGTGAAAA
TGGCAAAAGTAGCAAGCATGCTTCCGTGCCAAAAGAAGCACGAAAACTTA
TGGAATGGAGAGAGCTTTTGCAAATCGATATCATTTCGTTATGTACGTGT
TATATCATTATAAGATATTGTACTAATGCATCAACCTCCTTAATCGTAAT
GAACGCAGCAACATTATTCCATTGGCCAGTCAGTTGGATTTCATGGCTCA
CCATAGCTGGTGCCTGCACTTATTTTCTTGTGATAACAATACTGATAAAA
TTTGGTGTCTTCAAAGGACTCAGAAGGAATTACTTCTTCTACCTATCATC
GTTAAATCTAACCTTGGTTATGCTTGCTATCATCCCATTACCAAGAATTG
ACAATCTTAAGAGTTACACACTCCAATTACTCTTTTTAGCGTTTCTAATC
CTTGCTAAAGGATGGACCTATTTCAATGCCCAGTCAGCAGGGAAGATCTT
ATTGTTCAACACAGTAACGCCAGAGAACTCTTGCCTGATTGACAGTATTA
GATCGTCTGTCGGTTCTTTGGCTCGGATGTTTGCTTTATCCACGAGTTTC
TTATGCTTTAAATATCCAGGTTATTTTATTTTACCAGCAGGAACTATATT
GTTTATAGGGAATTGTGTTATAGTTTACAGATATAAGGTTTATCTGTACA
AGCAGAGAAAGGGTGTGAAGTAAAATGCATTTACGACAGTTTACATGGAA
TACTTCTCCATTATCTTCATTACACTTAAACTTATTTTTTATGATATTAT
ATACACTTCTAAAGATTGACAACGTTAAAACTTAAAACATCCTATAAATT
AATTTTGCTTTCCAAATACTTGCTAAAGGATGGACCTTTTTCTGCCCAGT
CAGCAGGGAAGACTTAGTTGTTCGACACAGTAACGCCAGAGAGCTCTTGT
CTCTCTTGTCTTATTGACAGtattacaatcatggacaaaaggtctGTAGA
CTTTTCGGAAATTCCTCAATAGTGCCAAGAAAAGCTTTTTGGACACCAGG
GAAATTCCCCCAAATGAATCACAAGTGGTTATTTGGCAGAAGACACCTAC
GGGCTTGCTAGCAGTCCTCGTGACTTCCAATGACtgacactgggcgaaat
aagagatttccaatcctgagAATATCTTGTGAATATGATGTTTCCATATA
gttttgtaaatatggaaatactagccggtacccggcgtcgcacgccggtt
aagcagTAGCTGAACGCACTCAAAGTCCTTTGGAtattgaagctggctta
aaaaagcgatcaaataaaaaaagaaatctctacaacgtttaactctaacc
ttccccgggtgtcttatcttttaaacAAATTTGGATCGTGTACTGTCCCC
CCCCCAGTGACATAATTTTTgcttaagtcaaaagttatcagaaagagcat
cgtttactgtaccagtgtcgtttgaAAGGGCTCTGCAGGTAGTCAtcttt
ctcgcttcgctcgcgttaaatatTGTAGGGAT
Run BLAST on NCBI

transcript from alignment at scaffold_462:396313..400413-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066982 ID=TCONS_00066982|Name=TCONS_00066982|organism=Clytia hemisphaerica|type=transcript|length=4101bp|location=Sequence derived from alignment at scaffold_462:396313..400413- (Clytia hemisphaerica)
AAAGAGTGCAAGCTTAGCTTGTGAAATTTGAATTTTAAAGAAAAATTCAA
AAGCGTTGATACATAATTCGTCAATCTTCAAGTAAGGCATTGCTTTGATT
ACTCTAAGTCAGCCTGTTCTCCTTGATCACTAGCAAAGTGTGCAGCTAAG
GAAATCATTATCATTCAAGAGATGTTATCATTAACATTCAATTTGCAGAG
CTCGTGTTGTGATGTCTTAGAAACGAATTAAGGAAATTGTATAAAAGAGG
ATGATACGTATTTTCATATGCAATCTCCGTTGCCACGAGATAAAATTAGT
TATCCTTCAAGAAGGATCTGAAAAAATCAGACTGCCTTGAAAAAGTTAAT
TTTAAAATGACAGGAAGAGCTCTTCTTCACGAAGACTTCATTTACTACTA
AAGTTATATCATATATATCATAACCGAAAACATATTTATTATTTTTATAT
TTTATATATTTATAAAAACATAACATATACATATTTTAAATTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAATATATAT
AGAATTGTATATAGCTTGTATATATAGTTTTGTATATAGAACCTGACCTG
TGTTGACAAATAAATTAATAATAATAATAATAATAATAACAGTTTGTTTG
ACTGTAAGTAGGGAACAGTAGTGTCGTTCAGTGTGTGTTACCTACCAAAT
CCCACTCTCTTTCAAACTTGGATAATATCAAGGGATATAATTTTGGTTTT
CAGTTTCTTCAAAGGCGAGCAATTATTTTGAAAAAGGTGATAAGGTGACA
TGACAGGGACAACCACTTTAGAGAAAAGTGAAGAATACAAAAAATGGACA
AAGCTACTCAAGAAAACAACCTACTTTTCTTATCTTCTCATTTTTCTTGG
TGGTTTGGAAATCAATGCTGTCCAAATTTCAATGTTATATTATTTGGAAG
AAAGTTTTAAAATGACTCCAGACGAAGTAAGGCTAAATTTCAGTGTAGCT
GAAGCGTTTAATGCTTTAGGTCAACTTTTTAGTGGGTTATTGATTGGACG
TTATATGGACAGAACAAGGAATCTAAAATTATCCTGTTTATCGATTTTAT
GTGCTACCATCGTTGGGAATTTGTTATATTCCTTACCCGTTCACATTTCG
TTTATCGTGATTGGACGATTTTTATGTGGCTTCAATGAGGCGTTCCAAGT
TACTTTATGTGGTAAGACAATTAATTTCTGTCTCAAACGTATGTGGAGAC
ACCTTTTTTTTAAATTTCTCAGCATTAACTTATACACCGTTGGAAAGATG
TTCTGAGTAGAATAATCTAACAGACTTACGATGGTTCTGATACTGTAACT
TCGTGTAATGCCGAAATACCTTGTCTAATTCCATTATAGCAGATCTCTGG
TCTTTTTAAATGTTTGTAAATAAAACTTTGAGTAATCTGTTTAAAAATCA
TTCTAACTATTTTGCAGACCAGATAGTCGCTTATAAGGAATTTGACAAGT
TATGTCGGCATTATACACAAACTAACGGTACAATGAGTTCGGACATATTT
ATTCCGTCCTTTTTATTTCCATCAGGCGAATTCAAAAAATGTTATCATAA
AGAAGACGAGTTGATCCAAGTTTTGAGTTGGTATGAACTCTTCTTCGCCG
TTGGTATGGCTACTGGACCTGGTGCACCAGTCTTTTTCTCGTGGGTGAAT
TTGAAAATTGGTAAGTATTTGATACTAATGAAGATAGATAATAAACAGAA
CCATTTTTCTGTACTTAATTGTAATTGTAGCTTTAGCTGGATCATCGTCG
CGACGACTGTTGGCGATCAACATTAGTACGACGTGGACCCACGTGGATTT
ACAGTTGTAAGACTATTTGAAAGTTATACAGTACTTCAATCCCAAAAATA
AAATTTTTCGTACTTCAATTAGATTTATTTTCGAACTACAACTATCCTTT
CTTGATCACGACCTTTTTCATCCCGTTGCCTTCAAGCTCATTCATATTCG
GGTCAATAGAATGATAATACCTTATATCCCATTTTAGACGTTGAAAGGGA
CATTAAAGTAGTAAAATGTAAACATTGCGCGAACCACATGTCATTAAAGA
GAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATTGAACAA
TCAAAATTAGCCATATTTGGTTTGATTTTTTATTTTGACATGTGACATGT
GTTTTGATTTTGTATCCCGCTGCATACAGTTTGTTTACAAATTTTGCAAG
TACTGTTATGTCCCTTTAATATTTTGAAGTTCAATTTTTGCAGGTGGATG
GATGATCAATAAATACAATGCATTACACGTATTCCTTGTAGTCATGTTAG
CCCTTTTGTTCATCATATTATGGTTCCAACTCACTGATCTATCAAAAGAC
CTGGATCGTATGAGAGAGAAATTCAACACTATGTCAAAATCTTCCCATGA
TGAACAAGCATTAGAGAAAAGATCTAAAAAAATAAACAGCGGAAAGGACC
GTTTAACTACTGGTGAAAATGGCAAAAGTAGCAAGCATGCTTCCGTGCCA
AAAGAAGCACGAAAACTTATGGAATGGAGAGAGCTTTTGCAAATCGATAT
CATTTCGTTATGTACGTGTTATATCATTATAAGATATTGTACTAATGCAT
CAACCTCCTTAATCGTAATGAACGCAGCAACATTATTCCATTGGCCAGTC
AGTTGGATTTCATGGCTCACCATAGCTGGTGCCTGCACTTATTTTCTTGT
GATAACAATACTGATAAAATTTGGTGTCTTCAAAGGACTCAGAAGGAATT
ACTTCTTCTACCTATCATCGTTAAATCTAACCTTGGTTATGCTTGCTATC
ATCCCATTACCAAGAATTGACAATCTTAAGAGTTACACACTCCAATTACT
CTTTTTAGCGTTTCTAATCCTTGCTAAAGGATGGACCTATTTCAATGCCC
AGTCAGCAGGGAAGATCTTATTGTTCAACACAGTAACGCCAGAGAACTCT
TGCCTGATTGACAGTATTAGATCGTCTGTCGGTTCTTTGGCTCGGATGTT
TGCTTTATCCACGAGTTTCTTATGCTTTAAATATCCAGGTTATTTTATTT
TACCAGCAGGAACTATATTGTTTATAGGGAATTGTGTTATAGTTTACAGA
TATAAGGTTTATCTGTACAAGCAGAGAAAGGGTGTGAAGTAAAATGCATT
TACGACAGTTTACATGGAATACTTCTCCATTATCTTCATTACACTTAAAC
TTATTTTTTATGATATTATATACACTTCTAAAGATTGACAACGTTAAAAC
TTAAAACATCCTATAAATTAATTTTGCTTTCCAAATACTTGCTAAAGGAT
GGACCTTTTTCTGCCCAGTCAGCAGGGAAGACTTAGTTGTTCGACACAGT
AACGCCAGAGAGCTCTTGTCTCTCTTGTCTTATTGACAGTATTACAATCA
TGGACAAAAGGTCTGTAGACTTTTCGGAAATTCCTCAATAGTGCCAAGAA
AAGCTTTTTGGACACCAGGGAAATTCCCCCAAATGAATCACAAGTGGTTA
TTTGGCAGAAGACACCTACGGGCTTGCTAGCAGTCCTCGTGACTTCCAAT
GACTGACACTGGGCGAAATAAGAGATTTCCAATCCTGAGAATATCTTGTG
AATATGATGTTTCCATATAGTTTTGTAAATATGGAAATACTAGCCGGTAC
CCGGCGTCGCACGCCGGTTAAGCAGTAGCTGAACGCACTCAAAGTCCTTT
GGATATTGAAGCTGGCTTAAAAAAGCGATCAAATAAAAAAAGAAATCTCT
ACAACGTTTAACTCTAACCTTCCCCGGGTGTCTTATCTTTTAAACAAATT
TGGATCGTGTACTGTCCCCCCCCCAGTGACATAATTTTTGCTTAAGTCAA
AAGTTATCAGAAAGAGCATCGTTTACTGTACCAGTGTCGTTTGAAAGGGC
TCTGCAGGTAGTCATCTTTCTCGCTTCGCTCGCGTTAAATATTGTAGGGA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041849XLOC_041849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066982-exon-scaffold_462-1575043694:400333..400413TCONS_00066982-exon-scaffold_462-1575043694:400333..400413Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1575043694:399103..399560TCONS_00066982-exon-scaffold_462-1575043694:399103..399560Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1575043694:398604..398738TCONS_00066982-exon-scaffold_462-1575043694:398604..398738Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1575043694:396313..398020TCONS_00066982-exon-scaffold_462-1575043694:396313..398020Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1510915933:400333..400413TCONS_00066982-exon-scaffold_462-1510915933:400333..400413Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1510915933:399103..399560TCONS_00066982-exon-scaffold_462-1510915933:399103..399560Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1510915933:398604..398738TCONS_00066982-exon-scaffold_462-1510915933:398604..398738Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1510915933:396313..398020TCONS_00066982-exon-scaffold_462-1510915933:396313..398020Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1491911889:400333..400413TCONS_00066982-exon-scaffold_462-1491911889:400333..400413Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1491911889:399103..399560TCONS_00066982-exon-scaffold_462-1491911889:399103..399560Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1491911889:398604..398738TCONS_00066982-exon-scaffold_462-1491911889:398604..398738Clytia hemisphaericaexon
TCONS_00066982-exon-scaffold_462-1491911889:396313..398020TCONS_00066982-exon-scaffold_462-1491911889:396313..398020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:396313..400413 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.964755	0.639028	0.729453	0.834531	1.28011	1.2834	3.67439	3.46092	2.6529	3.40117	1.55173	2.09822	1.14034	1.10897	1.32372	1.14779	0.511723	0.521692	3.25966	3.43516	0.4234	0.61818	0.466284	0.516695	0.446663	0.481904	0.372479	0.163035	0.228105	0.491763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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