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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066977 ID=TCONS_00066977|Name=TCONS_00066977|organism=Clytia hemisphaerica|type=transcript|length=1970bp
AAGagctctagattggctaaaaacgcaaTCGAAAAGCAAAAATCATTCGA
AGAAGCCAATACCTATATCTAGGCGAAATATTCAAATTCAGgaaaaatca
ctttaaaaaaattatcattaaaTTATTAGGAGGGAATCAGCACTGGTACA
TATAGAATTGAGTAGATTATTTCAGGCCTTCTCTATTTTAAATCGAAAAC
GAAAATGTTGACAAATGGCAAAGAAGATTGGTGTCTTTTGTTTACGAAAT
GAGCGTTTTGGACAAAGCTTATATATCACTTTGTAAAATActgaaagaaa
ttatttttgtaagaaTTTACTTTTGCGAATTTTGGCAAATCAAAATGTTA
CAAATCAACGCTATAAAAGACTGAAAATGAGGGAAAGAGACCTAACAAAT
ATAGCTGATGTAGTCGCCTCTTATGACATCCCCTATATAACACTCGTTTC
AGGTTACCATGGAAGCTATGGAATCAAGTGAAGAATACAAAAAATGGACA
GCTCGACGCAAGAAAACAACCAACATTTcttatttcatcatttttcttgG
AGGCTTAGAAATCAATGCTGTGACAATTGCACTTTTATATTATTTGAAGG
AGAGTTTTGACATGAATCCAAACCAAATCAGACTGTATTACAGTCTTGCT
GAAATGTGCAACGCCCTGGGACAGATTTTTAGTAGTTTATTAATAGGGCG
TTATATGGATGGATCAAGGAAGATGAAATTTTCCTGCTTATTGATTTTAT
GTGCTACCATCGTTGGAAATACAATTTATTCCTTTCCCTTTCATATTTCA
CTTATTCTGATTGGACGATTTTTATGTGGCTTCAATGAGGCGTTCCAAGT
TGCTTTATGTGGCGAGTACAAAAGATGTTACAAAGAAGACGACTTGATTC
GAGTTTTGAGTTGGTACGAACTCTGCTTTGCCATTGGTATGGCTATGGGA
CCTGGTGCACCTGTTTTTTTCTCTTGGGTTTACTTTAAAGAGGATGGCGA
GTCGACAAATATAATGCATTACACGTATTCCTTGTGATCGTGTCAGTGCT
TTTGTTCATCATATTATGGTTCCAACTCACTGATCTATCAAAAGACCTGG
ATCGTATGAGAGAAAAGTATTCCCAAAACGAACAAACTGAAAATACGTGT
CACGATGACGACTCAGAGGATCTACACAAACGACAAATCGAGTCAGATCA
ATGTAGTAATATAAACAAACGTCAAAAGAGCTTTGCAACATCCcaaaaaa
gttggaaaatcGACAATGGTTCCACCGAGCCGCCAGAACGGAAACTCATG
AAATGGAAAGAGCTTTTGCAAATCGATATCGTTTCATTATGTACATGTTA
TACTATTTTACGGTATGCAACCAATGCTTCAGCCTCCTTAATCGCTATGA
ACGCTGCTACATTATTCCATTGGCCAGTCAGTTGGATTTCTTGGCTCACC
ATAACCGGATCTGGTTCCAGCTTTCTTTATATTACAATGTTGATAAGATG
TGGAGTCTTCAATGGActcaaacaaaattattttttttatctgtcATCGT
TGAATGTATCGTTGATATTGATTGCCGTTTTACCGTTACCAAGGATTGTA
AACATGGACACTTACGCTCCACAAATGCTCTATTTGGCTTTCCAAATGCT
TGCGAAAGGATGGGCTTATTTCATCGTTCACTCATCAGGAAAGATCCTAT
TATTCAACACAGTAACACCAGAGAATTCTTGTCTGATTGACAGTATCAGG
TCAACTTTTGGTTCTTTGGCTCGGCTGTTTGCTTATTCTACAAGTTTCTT
ATGTTTTAATTACccagaatttttctttttaccagCTGGAACTATTTTGT
TTATAGGGAATTGCGTTGTAGTTTACAGATATAAGGTTCACATGTACAAA
CGTAAGAAGATTTTGTAAATATatagttttattgaaaaatataagtaATC
TGATATTGGCtaaaacgcgt Run BLAST on NCBI transcript from alignment at scaffold_462:355809..359662- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066977 ID=TCONS_00066977|Name=TCONS_00066977|organism=Clytia hemisphaerica|type=transcript|length=3854bp|location=Sequence derived from alignment at scaffold_462:355809..359662- (Clytia hemisphaerica)
AAGAGCTCTAGATTGGCTAAAAACGCAATCGAAAAGCAAAAATCATTCGA
AGAAGCCAATACCTATATCTAGGCGAAATATTCAAATTCAGGAAAAATCA
CTTTAAAAAAATTATCATTAAATTATTAGGAGGGAATCAGCACTGGTACA
TATAGAATTGAGTAGATTATTTCAGGCCTTCTCTATTTTAAATCGAAAAC
GAAAATGTTGACAAATGGCAAAGAAGATTGGTGTCTTTTGTTTACGAAAT
GAGCGTTTTGGACAAAGCTTATATATCACTTTGTAAAATACTGAAAGAAA
TTATTTTTGTAAGAATTTACTTTTGCGAATTTTGGCAAATCAAAATGTTA
CAAATCAACGCTATAAAAGACTGAAAATGAGGGAAAGAGACCTAACAAAT
ATAGCTGATGTAGTCGCCTCTTATGACATCCCCTATATAACACTCGTTTC
AGGTTACCATGGAAGCTATGGAATCAAGTGAAGAATACAAAAAATGGACA
GCTCGACGCAAGAAAACAACCAACATTTCTTATTTCATCATTTTTCTTGG
AGGCTTAGAAATCAATGCTGTGACAATTGCACTTTTATATTATTTGAAGG
AGAGTTTTGACATGACNAGGCTTGGAAATCAATGCTGTGACAATCGCACT
TTTATATTATCTGAAGGAGAGTTTTGACATGAATCCAAACCAAATCAGAC
TGTATTACAGTCTTGCTGAAATGTGCAACGCCCTGGGACAGATTTTTAGT
AGTTTATTAATAGGGCGTTATATGGATGGATCAAGGAAGATGAAATTTTC
CTGCTTATTGATTTTATGTGCTACCATCGTTGGAAATACAATTTATTCCT
TTCCCTTTCATATTTCACTTATTCTGATTGGACGATTTTTATGTGGCTTC
AATGAGGCGTTCCAAGTTGCTTTATGTGGTAAGAACTTTTCTTGGTTTTA
AGAAAATTTTTGATTTTTTTTTTGAAGAATGGTAAAAAAACAATCAAATC
AAAGAGAGAAAATTAGAAATATTAGTCAATACTCGAAAGAGATGTTTGAC
TGTGTCTAAAAAAGGCATCTTCTAAAAAGATATTTGACAGCTCATACATT
TTTATGCAATGAAAAGTAAGACCTCGTTGGAAAGTTAAGTTTAAGCAGAT
TTTGACTTTTGGGAAATTTATTTGAAGGAGATTGTTATATGTCTACAGAT
ATTCAATCCTCATTCATTGAAGCGAAGGGTTTAGTAAGAAATGAAGTAGA
CTTTTAGACTAAAAAATATAGGCGTAGGGTAAGTGCGTTTTCTGAAAATT
AGAGTAAAACTTTTTAATTCTCAAAGATAATACCCCTGAGAAAAACTGGT
CTTATTTTCTAACGTATGGGTTGGTTGATAAAAGTTGAGACGTCGTGAAG
TCGTGTGAACATAATTGAAGAGCCAACTCATCTCTGTGTACATCTTGATT
TTAGCCGTTTTAAAACTCAAAATTACAACTCTGAAGATACACAACGATGG
CAGAAAAAAAATCAACCAATGACTAAAACATTATCACTAGGTCATCCATA
TTGGAGATAATTTCTTTTTTTTAAATATACCTTAGGCGAGTACAAAAGAT
GTTACAAAGAAGACGACTTGATTCGAGTTTTGAGTTGGTACGAACTCTGC
TTTGCCATTGGTATGGCTATGGGACCTGGTGCACCTGTTTTTTTCTCTTG
GGTTTACTTTAAAGTTGGTAAGTAAATTGCTTCTACATTAACTGATACGA
TCTAGTCTAAATTCCTCAACGAGGCCAAACCTGAGGCATCAGTCGAGACA
TGAACATCAACTAAAGTGCCCAACATGTTGAAAATCGAGCGTCAGTTGAT
TTTAATGGACGCTTGAAAAGTTTGAAAATATGGTAACAAAAGAATTTCAC
AATCTTCTCGTTTGTCTCTTCTCTTTTGTCTCTAAGTTTGCACGATCGAG
TGATGGTATTTCAAGCAAAATTAAGCCAAAAACATGATTTTGTATTGATT
GTACAATACTTTTATCAGTGAGAAGGCACTCCTTAAAGTGTATTAGAGAC
ACTGGATAAATGACTCATAAAACGGTGGAGAGCGACCATTGTATTTCCAT
TGTTTCAGAAAACAATTGATGTTCTAGCTTTGTCCGCAACTGTCATTGCG
GCTCGCATGTATCTGATTTTTAAAAATGTTTATTAATAACATTTTAAAAA
AGTTCTCTAGGTTTTTCTTTTCGTACATTTGCAGGGAAAAAACTTTGAAA
GTAAGGCTAGAATACAAGCCGGATACATTTGTGAAATCTAATGTGAGAAA
AACATCATTAGACGAGGAAAATCAAACAAAATGCTTATAGTAATATCTTT
CCAAAACTGTACCAAAAGAGCTTAAAGTAACAAACATTAGACTTGAGTGT
CTTGGTGTCACTGTAGTTTTGGAGGCACGTGGTGGCAAGGTGGTTTTTTT
GTGGTTGAAGTTTGAAAATTTAGGTGTCAACATTCAATTTCTTATACACT
ACACATCTTTTGCATCTTTCTCACAACTTGAAACATCATAACGACATATA
ATTGGGCATAATTGGCAATTAAATAGAAGAACATGACTCTCACAGGAAAA
TTTGAAGTCTCGACTCTTTTGGGAATGAGTGATTTTCGATAAGAAACGCA
ATTAAAATGTTTCGAAAATCATTTAATGAGGGAAGGAGAGTGAACAATAA
TATCATTACTGCGGACATTGCTAAAACATGAGAAATCAGCAAAAATCAGG
TACTTGTATATCATAATAAATCCTTGAGTGTATATTAAGTTTTGAGAATG
GAAAACTCTTAGAAAAAAGGAGTCGACTAATTAAAAATGTAATTCACGTA
TATTTTCTTATTCGATTTCACAGGAGGATGGCGAGTCGACAAATATAATG
CATTACACGTATTCCTTGTGATCGTGTCAGTGCTTTTGTTCATCATATTA
TGGTTCCAACTCACTGATCTATCAAAAGACCTGGATCGTATGAGAGAAAA
GTATTCCCAAAACGAACAAACTGAAAATACGTGTCACGATGACGACTCAG
AGGATCTACACAAACGACAAATCGAGTCAGATCAATGTAGTAATATAAAC
AAACGTCAAAAGAGCTTTGCAACATCCCAAAAAAGTTGGAAAATCGACAA
TGGTTCCACCGAGCCGCCAGAACGGAAACTCATGAAATGGAAAGAGCTTT
TGCAAATCGATATCGTTTCATTATGTACATGTTATACTATTTTACGGTAT
GCAACCAATGCTTCAGCCTCCTTAATCGCTATGAACGCTGCTACATTATT
CCATTGGCCAGTCAGTTGGATTTCTTGGCTCACCATAACCGGATCTGGTT
CCAGCTTTCTTTATATTACAATGTTGATAAGATGTGGAGTCTTCAATGGA
CTCAAACAAAATTATTTTTTTTATCTGTCATCGTTGAATGTATCGTTGAT
ATTGATTGCCGTTTTACCGTTACCAAGGATTGTAAACATGGACACTTACG
CTCCACAAATGCTCTATTTGGCTTTCCAAATGCTTGCGAAAGGATGGGCT
TATTTCATCGTTCACTCATCAGGAAAGATCCTATTATTCAACACAGTAAC
ACCAGAGAATTCTTGTCTGATTGACAGTATCAGGTCAACTTTTGGTTCTT
TGGCTCGGCTGTTTGCTTATTCTACAAGTTTCTTATGTTTTAATTACCCA
GAATTTTTCTTTTTACCAGCTGGAACTATTTTGTTTATAGGGAATTGCGT
TGTAGTTTACAGATATAAGGTTCACATGTACAAACGTAAGAAGATTTTGT
AAATATATAGTTTTATTGAAAAATATAAGTAATCTGATATTGGCTAAAAC
GCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066977-exon-scaffold_462-1575043694:359052..359662 | TCONS_00066977-exon-scaffold_462-1575043694:359052..359662 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1575043694:358735..358984 | TCONS_00066977-exon-scaffold_462-1575043694:358735..358984 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1575043694:357950..358077 | TCONS_00066977-exon-scaffold_462-1575043694:357950..358077 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1575043694:355809..356789 | TCONS_00066977-exon-scaffold_462-1575043694:355809..356789 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1510915933:359052..359662 | TCONS_00066977-exon-scaffold_462-1510915933:359052..359662 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1510915933:358735..358984 | TCONS_00066977-exon-scaffold_462-1510915933:358735..358984 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1510915933:357950..358077 | TCONS_00066977-exon-scaffold_462-1510915933:357950..358077 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1510915933:355809..356789 | TCONS_00066977-exon-scaffold_462-1510915933:355809..356789 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1491911889:359052..359662 | TCONS_00066977-exon-scaffold_462-1491911889:359052..359662 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1491911889:358735..358984 | TCONS_00066977-exon-scaffold_462-1491911889:358735..358984 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1491911889:357950..358077 | TCONS_00066977-exon-scaffold_462-1491911889:357950..358077 | Clytia hemisphaerica | exon |
| TCONS_00066977-exon-scaffold_462-1491911889:355809..356789 | TCONS_00066977-exon-scaffold_462-1491911889:355809..356789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:355809..359662 - |
Blast
The following BLAST results are available for this feature:
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