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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066976 ID=TCONS_00066976|Name=TCONS_00066976|organism=Clytia hemisphaerica|type=transcript|length=1412bp
CAATGCTGTGACAATCGCACTTTTATATTATCTGAAGGAGAGTTTTGACA
TGAATCCAAACCAAATCAGACTGTATTACAGTCTTGCTGAAATGTGCAAC
GCCCTGGGACAGATTTTTAGTAGTTTATTAATAGGGCGTTATATGGATGG
ATCAAGGAAGATGAAATTTTCCTGCTTATTGATTTTATGTGCTACCATCG
TTGGAAATACAATTTATTCCTTTCCCTTTCATATTTCACTTATTCTGATT
GGACGATTTTTATGTGGCTTCAATGAGGCGTTCCAAGTTGCTTTATGTGG
CGAGTACAAAAGATGTTACAAAGAAGACGACTTGATTCGAGTTTTGAGTT
GGTACGAACTCTGCTTTGCCATTGGTATGGCTATGGGACCTGGTGCACCT
GTTTTTTTCTCTTGGGTTTACTTTAAAGTTGGAGGATGGCGAGTCGACAA
ATATAATGCATTACACGTATTCCTTGTGATCGTGTCAGTGCTTTTGTTCA
TCATATTATGGTTCCAACTCACTGATCTATCAAAAGACCTGGATCGTATG
AGAGAAAAGTATTCCCAAAACGAACAAACTGAAAATACGTGTCACGATGA
CGACTCAGAGGATCTACACAAACGACAAATCGAGTCAGATCAATGTAGTA
ATATAAACAAACGTCAAAAGAGCTTTGCAACATCCcaaaaaagttggaaa
atcGACAATGGTTCCACCGAGCCGCCAGAACGGAAACTCATGAAATGGAA
AGAGCTTTTGCAAATCGATATCGTTTCATTATGTACATGTTATACTATTT
TACGGTATGCAACCAATGCTTCAGCCTCCTTAATCGCTATGAACGCTGCT
ACATTATTCCATTGGCCAGTCAGTTGGATTTCTTGGCTCACCATAACCGG
ATCTGGTTCCAGCTTTCTTTATATTACAATGTTGATAAGATGTGGAGTCT
TCAATGGActcaaacaaaattattttttttatctgtcATCGTTGAATGTA
TCGTTGATATTGATTGCCGTTTTACCGTTACCAAGGATTGTAAACATGGA
CACTTACGCTCCACAAATGCTCTATTTGGCTTTCCAAATGCTTGCGAAAG
GATGGGCTTATTTCATCGTTCACTCATCAGGAAAGATCCTATTATTCAAC
ACAGTAACACCAGAGAATTCTTGTCTGATTGACAGTATCAGGTCAACTTT
TGGTTCTTTGGCTCGGCTGTTTGCTTATTCTACAAGTTTCTTATGTTTTA
ATTACccagaatttttctttttaccagCTGGAACTATTTTGTTTATAGGG
AATTGCGTTGTAGTTTACAGATATAAGGTTCACATGTACAAACGTAAGAA
GATTTTGTAAATATatagttttattgaaaaatataagtaATCTGATATTG
GCtaaaacgcgt Run BLAST on NCBI transcript from alignment at scaffold_462:355809..359033- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066976 ID=TCONS_00066976|Name=TCONS_00066976|organism=Clytia hemisphaerica|type=transcript|length=3225bp|location=Sequence derived from alignment at scaffold_462:355809..359033- (Clytia hemisphaerica)
CAATGCTGTGACAATCGCACTTTTATATTATCTGAAGGAGAGTTTTGACA
TGAATCCAAACCAAATCAGACTGTATTACAGTCTTGCTGAAATGTGCAAC
GCCCTGGGACAGATTTTTAGTAGTTTATTAATAGGGCGTTATATGGATGG
ATCAAGGAAGATGAAATTTTCCTGCTTATTGATTTTATGTGCTACCATCG
TTGGAAATACAATTTATTCCTTTCCCTTTCATATTTCACTTATTCTGATT
GGACGATTTTTATGTGGCTTCAATGAGGCGTTCCAAGTTGCTTTATGTGG
TAAGAACTTTTCTTGGTTTTAAGAAAATTTTTGATTTTTTTTTTGAAGAA
TGGTAAAAAAACAATCAAATCAAAGAGAGAAAATTAGAAATATTAGTCAA
TACTCGAAAGAGATGTTTGACTGTGTCTAAAAAAGGCATCTTCTAAAAAG
ATATTTGACAGCTCATACATTTTTATGCAATGAAAAGTAAGACCTCGTTG
GAAAGTTAAGTTTAAGCAGATTTTGACTTTTGGGAAATTTATTTGAAGGA
GATTGTTATATGTCTACAGATATTCAATCCTCATTCATTGAAGCGAAGGG
TTTAGTAAGAAATGAAGTAGACTTTTAGACTAAAAAATATAGGCGTAGGG
TAAGTGCGTTTTCTGAAAATTAGAGTAAAACTTTTTAATTCTCAAAGATA
ATACCCCTGAGAAAAACTGGTCTTATTTTCTAACGTATGGGTTGGTTGAT
AAAAGTTGAGACGTCGTGAAGTCGTGTGAACATAATTGAAGAGCCAACTC
ATCTCTGTGTACATCTTGATTTTAGCCGTTTTAAAACTCAAAATTACAAC
TCTGAAGATACACAACGATGGCAGAAAAAAAATCAACCAATGACTAAAAC
ATTATCACTAGGTCATCCATATTGGAGATAATTTCTTTTTTTTAAATATA
CCTTAGGCGAGTACAAAAGATGTTACAAAGAAGACGACTTGATTCGAGTT
TTGAGTTGGTACGAACTCTGCTTTGCCATTGGTATGGCTATGGGACCTGG
TGCACCTGTTTTTTTCTCTTGGGTTTACTTTAAAGTTGGTAAGTAAATTG
CTTCTACATTAACTGATACGATCTAGTCTAAATTCCTCAACGAGGCCAAA
CCTGAGGCATCAGTCGAGACATGAACATCAACTAAAGTGCCCAACATGTT
GAAAATCGAGCGTCAGTTGATTTTAATGGACGCTTGAAAAGTTTGAAAAT
ATGGTAACAAAAGAATTTCACAATCTTCTCGTTTGTCTCTTCTCTTTTGT
CTCTAAGTTTGCACGATCGAGTGATGGTATTTCAAGCAAAATTAAGCCAA
AAACATGATTTTGTATTGATTGTACAATACTTTTATCAGTGAGAAGGCAC
TCCTTAAAGTGTATTAGAGACACTGGATAAATGACTCATAAAACGGTGGA
GAGCGACCATTGTATTTCCATTGTTTCAGAAAACAATTGATGTTCTAGCT
TTGTCCGCAACTGTCATTGCGGCTCGCATGTATCTGATTTTTAAAAATGT
TTATTAATAACATTTTAAAAAAGTTCTCTAGGTTTTTCTTTTCGTACATT
TGCAGGGAAAAAACTTTGAAAGTAAGGCTAGAATACAAGCCGGATACATT
TGTGAAATCTAATGTGAGAAAAACATCATTAGACGAGGAAAATCAAACAA
AATGCTTATAGTAATATCTTTCCAAAACTGTACCAAAAGAGCTTAAAGTA
ACAAACATTAGACTTGAGTGTCTTGGTGTCACTGTAGTTTTGGAGGCACG
TGGTGGCAAGGTGGTTTTTTTGTGGTTGAAGTTTGAAAATTTAGGTGTCA
ACATTCAATTTCTTATACACTACACATCTTTTGCATCTTTCTCACAACTT
GAAACATCATAACGACATATAATTGGGCATAATTGGCAATTAAATAGAAG
AACATGACTCTCACAGGAAAATTTGAAGTCTCGACTCTTTTGGGAATGAG
TGATTTTCGATAAGAAACGCAATTAAAATGTTTCGAAAATCATTTAATGA
GGGAAGGAGAGTGAACAATAATATCATTACTGCGGACATTGCTAAAACAT
GAGAAATCAGCAAAAATCAGGTACTTGTATATCATAATAAATCCTTGAGT
GTATATTAAGTTTTGAGAATGGAAAACTCTTAGAAAAAAGGAGTCGACTA
ATTAAAAATGTAATTCACGTATATTTTCTTATTCGATTTCACAGGAGGAT
GGCGAGTCGACAAATATAATGCATTACACGTATTCCTTGTGATCGTGTCA
GTGCTTTTGTTCATCATATTATGGTTCCAACTCACTGATCTATCAAAAGA
CCTGGATCGTATGAGAGAAAAGTATTCCCAAAACGAACAAACTGAAAATA
CGTGTCACGATGACGACTCAGAGGATCTACACAAACGACAAATCGAGTCA
GATCAATGTAGTAATATAAACAAACGTCAAAAGAGCTTTGCAACATCCCA
AAAAAGTTGGAAAATCGACAATGGTTCCACCGAGCCGCCAGAACGGAAAC
TCATGAAATGGAAAGAGCTTTTGCAAATCGATATCGTTTCATTATGTACA
TGTTATACTATTTTACGGTATGCAACCAATGCTTCAGCCTCCTTAATCGC
TATGAACGCTGCTACATTATTCCATTGGCCAGTCAGTTGGATTTCTTGGC
TCACCATAACCGGATCTGGTTCCAGCTTTCTTTATATTACAATGTTGATA
AGATGTGGAGTCTTCAATGGACTCAAACAAAATTATTTTTTTTATCTGTC
ATCGTTGAATGTATCGTTGATATTGATTGCCGTTTTACCGTTACCAAGGA
TTGTAAACATGGACACTTACGCTCCACAAATGCTCTATTTGGCTTTCCAA
ATGCTTGCGAAAGGATGGGCTTATTTCATCGTTCACTCATCAGGAAAGAT
CCTATTATTCAACACAGTAACACCAGAGAATTCTTGTCTGATTGACAGTA
TCAGGTCAACTTTTGGTTCTTTGGCTCGGCTGTTTGCTTATTCTACAAGT
TTCTTATGTTTTAATTACCCAGAATTTTTCTTTTTACCAGCTGGAACTAT
TTTGTTTATAGGGAATTGCGTTGTAGTTTACAGATATAAGGTTCACATGT
ACAAACGTAAGAAGATTTTGTAAATATATAGTTTTATTGAAAAATATAAG
TAATCTGATATTGGCTAAAACGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066976-exon-scaffold_462-1575043694:358735..359033 | TCONS_00066976-exon-scaffold_462-1575043694:358735..359033 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1575043694:357946..358077 | TCONS_00066976-exon-scaffold_462-1575043694:357946..358077 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1575043694:355809..356789 | TCONS_00066976-exon-scaffold_462-1575043694:355809..356789 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1510915933:358735..359033 | TCONS_00066976-exon-scaffold_462-1510915933:358735..359033 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1510915933:357946..358077 | TCONS_00066976-exon-scaffold_462-1510915933:357946..358077 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1510915933:355809..356789 | TCONS_00066976-exon-scaffold_462-1510915933:355809..356789 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1491911889:358735..359033 | TCONS_00066976-exon-scaffold_462-1491911889:358735..359033 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1491911889:357946..358077 | TCONS_00066976-exon-scaffold_462-1491911889:357946..358077 | Clytia hemisphaerica | exon |
| TCONS_00066976-exon-scaffold_462-1491911889:355809..356789 | TCONS_00066976-exon-scaffold_462-1491911889:355809..356789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:355809..359033 - |
Blast
The following BLAST results are available for this feature:
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