TCONS_00066975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066975
Unique NameTCONS_00066975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066975 ID=TCONS_00066975|Name=TCONS_00066975|organism=Clytia hemisphaerica|type=transcript|length=1958bp
ATCTTTTGTCAAATGATGCAATTAACGTGCAAAAGAGATTAACgcaaagg
ttgatgggattggaactcgtacaaacacatcgagagtaatgattatgtca
aaaataaaatctatttttagattcagcgcggtgcgctattcTTTGAATTT
GACCAAATATGTAACTCTCGAATTATAattgggcattacaggagggttGC
TTTTTAACACCACATATCGGATAAATTCGTCATCGTATTCTTGAAAGGGT
TAAAAAATACACgaggtaaaatttttttttgaataaaaaaagcatTATCT
AATAAATTTAATCTACTAAAGATATTTGAACTGATTCCAAAAATAgtgct
aaaaatcaaaattgttagaagtaaaaagtttgttaatgtaattcaAGAAT
TTTTAAGTTCTGAAGATGTTTTTTGCATGATATCAAAATTCTCATCACAA
TATTGTGCAGCAATCACGTCGTGGTGGTTGTCTGATTTCAATATGAGCAC
CATGTCCTTCGTCACGAACTTTACGTCGTTGTCCTCTACCTGCGTTCGAC
CGTAACTCGTTATCCATTTGAGATTTCGTAGGTGCTTGATTATTAATTTC
AATTTGACTGTCCACGAAGCTCTGGACGTATGATCGCGAAGGATCATTAT
AAGGTGATGGTGACTGATGGGCGTTATCTGTTGGTTGACCTAATGCACTT
TGGAAAGGATCGATTTCGTCAATATTGCGACCGTCATCAGTTCTGCCAtc
actactactactactacagCCAGCATCTGATCTGTTTATTTTCTGTCGAA
ATCTACCACCATCATCAGATAAATCATCACTGTCACTATTTTCACCAGAA
TCGGATCCGTAAGGATTTGGTACTCGTTGATTTTCATCTAGCAATCCATG
CTGATCAAAGTTTCGATGAAAGATGTGCGGAAATGGAAACATTTCAGCAA
AGATGCCTCTGATACCATCATTTGGCGCAGCCAATATAACCAAAGCTACA
TTCAAAGCCGGATAAAACAAACTAAATATCATTGCCACAGCTGAATTTCT
CCTTAATAGATCATTGGTCCCATTAATGAAATCTGAGTCCTTGTAAAAAG
AGCTACAACTTCCATTGGTGAAGTTAGATTCGGTGAAACAACTGCATGGT
AATCTCAGTAACGGATTCATCTCATAAATGACAGCAGTTACTGGAAGGTA
AATCATCAATACAAGACCAAAAAGTGCTGTCTTCAAGTCGACACCATTGT
GGCGGTACCACGAAATAAACTCGAATAGCATTGCAGCTAATATACAGACA
CCAAATAGAATGATATCCAATAAGAAGATGTttacaaagaaagcaaaacA
ACATACGCCACCAGCCAAGATGAATGAAAGGCATTTAGGAAAACATGTAA
TTTGACAACCCATATCCATTCTGTTTACATTGTAAGCTTTGAAGGCGTTG
AATAACAGAAGAGAAATAGCAGACCCAACAAAGATTAAAAACGATAGTCT
CCCAAATTTGTGAAGCCTTGAACACCATTCGTTTACGTTCGTGTAAAGGT
CTGTGAAATGACATAAGAAAACGAGTACACAGGttccaaacaaaaaaaca
ttaaaaatcagCATTTGTTGTAGTAAGAAGAATTTACTTTCACGCATTCT
ATCAAGAATGTATATTAAGACTAGATTAAGAATCAATgtccaaaaaataa
agattcCAAGCGCAGCATAATTCAAATCTTGGGAATCGTCATCAATGTGA
ATTTGATAATACTGTGATGGTGCTGCAGACGTTGTGGTGATATTCAAAGA
AACATTTCCATCGGATGAAGTCATTGGTGCCTTTGATGAGATGATACTGA
CGCTTGTCAAAGAATACAGCCATAACCAAAGGTAAACGATGGAAGCCAAT
ACAAATAGTAGCAAAAGGACACCTCTCATTCTTTAAATCTTTCTCCGCAA
GCTGTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_462:323599..326074-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066975 ID=TCONS_00066975|Name=TCONS_00066975|organism=Clytia hemisphaerica|type=transcript|length=2476bp|location=Sequence derived from alignment at scaffold_462:323599..326074- (Clytia hemisphaerica)
ATCTTTTGTCAAATGATGCAATTAACGTGCAAAAGAGATTAACGCAAAGG
TTGATGGGATTGGAACTCGTACAAACACATCGAGAGTAATGATTATGTCA
AAAATAAAATCTATTTTTAGATTCAGCGCGGTGCGCTATTCTTTGAATTT
GACCAAATATGTAACTCTCGAATTATAATTGGGCATTACAGGAGGGTTGC
TTTTTAACACCACATATCGGATAAATTCGTCATCGTATTCTTGAAAGGGT
TAAAAAATACACGAGGTAAAATTTTTTTTTGAATAAAAAAAGCATTATCT
AATAAATTTAATCTACTAAAGATATTTGAACTGATTCCAAAAATAGTGCT
AAAAATCAAAATTGTTAGAAGTAAAAAGTTTGTTAATCTACATGTTTTTT
TTTTTTATAAGCAAGTGTATGCCCCTTGGTCAGGCTCGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCCCGAGCCAAGTTTTTAATGAAATTTCAGAAATTTTGTAAAAAT
TTGTTCAGATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAATGTCTTA
TTTTTAACTTGACCTCTAACAAAACTTTTTTAAAGAGATAAAAATGACCA
CTTGAAAAATATTTTAGGCTGACATATATGCTCATGTTATGCTTAGGAAT
TCTGCAAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAA
AACATGTAATTCAAGAATTTTTAAGTTCTGAAGATGTTTTTTGCATGATA
TCAAAATTCTCATCACAATATTGTGCAGCAATCACGTCGTGGTGGTTGTC
TGATTTCAATATGAGCACCATGTCCTTCGTCACGAACTTTACGTCGTTGT
CCTCTACCTGCGTTCGACCGTAACTCGTTATCCATTTGAGATTTCGTAGG
TGCTTGATTATTAATTTCAATTTGACTGTCCACGAAGCTCTGGACGTATG
ATCGCGAAGGATCATTATAAGGTGATGGTGACTGATGGGCGTTATCTGTT
GGTTGACCTAATGCACTTTGGAAAGGATCGATTTCGTCAATATTGCGACC
GTCATCAGTTCTGCCATCACTACTACTACTACTACAGCCAGCATCTGATC
TGTTTATTTTCTGTCGAAATCTACCACCATCATCAGATAAATCATCACTG
TCACTATTTTCACCAGAATCGGATCCGTAAGGATTTGGTACTCGTTGATT
TTCATCTAGCAATCCATGCTGATCAAAGTTTCGATGAAAGATGTGCGGAA
ATGGAAACATTTCAGCAAAGATGCCTCTGATACCATCATTTGGCGCAGCC
AATATAACCAAAGCTACATTCAAAGCCGGATAAAACAAACTAAATATCAT
TGCCACAGCTGAATTTCTCCTTAATAGATCATTGGTCCCATTAATGAAAT
CTGAGTCCTTGTAAAAAGAGCTACAACTTCCATTGGTGAAGTTAGATTCG
GTGAAACAACTGCATGGTAATCTCAGTAACGGATTCATCTCATAAATGAC
AGCAGTTACTGGAAGGTAAATCATCAATACAAGACCAAAAAGTGCTGTCT
TCAAGTCGACACCATTGTGGCGGTACCACGAAATAAACTCGAATAGCATT
GCAGCTAATATACAGACACCAAATAGAATGATATCCAATAAGAAGATGTT
TACAAAGAAAGCAAAACAACATACGCCACCAGCCAAGATGAATGAAAGGC
ATTTAGGAAAACATGTAATTTGACAACCCATATCCATTCTGTTTACATTG
TAAGCTTTGAAGGCGTTGAATAACAGAAGAGAAATAGCAGACCCAACAAA
GATTAAAAACGATAGTCTCCCAAATTTGTGAAGCCTTGAACACCATTCGT
TTACGTTCGTGTAAAGGTCTGTGAAATGACATAAGAAAACGAGTACACAG
GTTCCAAACAAAAAAACATTAAAAATCAGCATTTGTTGTAGTAAGAAGAA
TTTACTTTCACGCATTCTATCAAGAATGTATATTAAGACTAGATTAAGAA
TCAATGTCCAAAAAATAAAGATTCCAAGCGCAGCATAATTCAAATCTTGG
GAATCGTCATCAATGTGAATTTGATAATACTGTGATGGTGCTGCAGACGT
TGTGGTGATATTCAAAGAAACATTTCCATCGGATGAAGTCATTGGTGCCT
TTGATGAGATGATACTGACGCTTGTCAAAGAATACAGCCATAACCAAAGG
TAAACGATGGAAGCCAATACAAATAGTAGCAAAAGGACACCTCTCATTCT
TTAAATCTTTCTCCGCAAGCTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041848XLOC_041848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066975-exon-scaffold_462-1575043694:325690..326074TCONS_00066975-exon-scaffold_462-1575043694:325690..326074Clytia hemisphaericaexon
TCONS_00066975-exon-scaffold_462-1575043694:323599..325171TCONS_00066975-exon-scaffold_462-1575043694:323599..325171Clytia hemisphaericaexon
TCONS_00066975-exon-scaffold_462-1510915933:325690..326074TCONS_00066975-exon-scaffold_462-1510915933:325690..326074Clytia hemisphaericaexon
TCONS_00066975-exon-scaffold_462-1510915933:323599..325171TCONS_00066975-exon-scaffold_462-1510915933:323599..325171Clytia hemisphaericaexon
TCONS_00066975-exon-scaffold_462-1491911889:325690..326074TCONS_00066975-exon-scaffold_462-1491911889:325690..326074Clytia hemisphaericaexon
TCONS_00066975-exon-scaffold_462-1491911889:323599..325171TCONS_00066975-exon-scaffold_462-1491911889:323599..325171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:323599..326074 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.0374925 tpm) - - (7.8059 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138208	0.116032	0.337022	0.151173	0.407124	0.0374925	1.0922	1.13497	0.498971	1.29683	0.386122	0.38789	0.519184	0.515422	4.89637	7.8059	1.02163	1.40555	1.95643	0.617494	0.272081	0.214151	0.674409	1.17358	1.50431	1.36024	1.2035	0.950423	0.390383	0.19552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Sequence
Match NameE-valueIdentityDescription
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