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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066974 ID=TCONS_00066974|Name=TCONS_00066974|organism=Clytia hemisphaerica|type=transcript|length=1821bp
ccccgagccaagtttttaatgaaatttcagaaattttgtaaaaatttgtt
cagattttgggagcagtggaatgtagctagccgtggaatgtcttattttt
aacTTGACCTCtaacaaaacttttttaaagagataaaaatgaccacttga
aaaatattttaggctgacatatatgctcatgttatgcttaggaattctgc
aaatctgagccttcatatgcttataagcgttatgcttataaaaaaaacat
gtaattcaAGAATTTTTAAGTTCTGAAGATGTTTTTTGCATGATATCAAA
ATTCTCATCACAATATTGTGCAGCAATCACGTCGTGGTGGTTGTCTGATT
TCAATATGAGCACCATGTCCTTCGTCACGAACTTTACGTCGTTGTCCTCT
ACCTGCGTTCGACCGTAACTCGTTATCCATTTGAGATTTCGTAGGTGCTT
GATTATTAATTTCAATTTGACTGTCCACGAAGCTCTGGACGTATGATCGC
GAAGGATCATTATAAGGTGATGGTGACTGATGGGCGTTATCTGTTGGTTG
ACCTAATGCACTTTGGAAAGGATCGATTTCGTCAATATTGCGACCGTCAT
CAGTTCTGCCAtcactactactactactacagCCAGCATCTGATCTGTTT
ATTTTCTGTCGAAATCTACCACCATCATCAGATAAATCATCACTGTCACT
ATTTTCACCAGAATCGGATCCGTAAGGATTTGGTACTCGTTGATTTTCAT
CTAGCAATCCATGCTGATCAAAGTTTCGATGAAAGATGTGCGGAAATGGA
AACATTTCAGCAAAGATGCCTCTGATACCATCATTTGGCGCAGCCAATAT
AACCAAAGCTACATTCAAAGCCGGATAAAACAAACTAAATATCATTGCCA
CAGCTGAATTTCTCCTTAATAGATCATTGGTCCCATTAATGAAATCTGAG
TCCTTGTAAAAAGAGCTACAACTTCCATTGGTGAAGTTAGATTCGGTGAA
ACAACTGCATGGTAATCTCAGTAACGGATTCATCTCATAAATGACAGCAG
TTACTGGAAGGTAAATCATCAATACAAGACCAAAAAGTGCTGTCTTCAAG
TCGACACCATTGTGGCGGTACCACGAAATAAACTCGAATAGCATTGCAGC
TAATATACAGACACCAAATAGAATGATATCCAATAAGAAGATGTttacaa
agaaagcaaaacAACATACGCCACCAGCCAAGATGAATGAAAGGCATTTA
GGAAAACATGTAATTTGACAACCCATATCCATTCTGTTTACATTGTAAGC
TTTGAAGGCGTTGAATAACAGAAGAGAAATAGCAGACCCAACAAAGATTA
AAAACGATAGTCTCCCAAATTTGTGAAGCCTTGAACACCATTCGTTTACG
TTCGTGTAAAGGTCTGTGAAATGACATAAGAAAACGAGTACACAGGttcc
aaacaaaaaaacattaaaaatcagCATTTGTTGTAGTAAGAAGAATTTAC
TTTCACGCATTCTATCAAGAATGTATATTAAGACTAGATTAAGAATCAAT
gtccaaaaaataaagattcCAAGCGCAGCATAATTCAAATCTTGGGAATC
GTCATCAATGTGAATTTGATAATACTGTGATGGTGCTGCAGACGTTGTGG
TGATATTCAAAGAAACATTTCCATCGGATGAAGTCATTGGTGCCTTTGAT
GAGATGATACTGACGCTTGTCAAAGAATACAGCCATAACCAAAGGTAAAC
GATGGAAGCCAATACAAATAGTAGCAAAAGGACACCTCTCATTCTTTAAA
TCTTTCTCCGCAAGCTGTTTT Run BLAST on NCBI transcript from alignment at scaffold_462:323599..325419- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066974 ID=TCONS_00066974|Name=TCONS_00066974|organism=Clytia hemisphaerica|type=transcript|length=1821bp|location=Sequence derived from alignment at scaffold_462:323599..325419- (Clytia hemisphaerica)
CCCCGAGCCAAGTTTTTAATGAAATTTCAGAAATTTTGTAAAAATTTGTT
CAGATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAATGTCTTATTTTT
AACTTGACCTCTAACAAAACTTTTTTAAAGAGATAAAAATGACCACTTGA
AAAATATTTTAGGCTGACATATATGCTCATGTTATGCTTAGGAATTCTGC
AAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAAACAT
GTAATTCAAGAATTTTTAAGTTCTGAAGATGTTTTTTGCATGATATCAAA
ATTCTCATCACAATATTGTGCAGCAATCACGTCGTGGTGGTTGTCTGATT
TCAATATGAGCACCATGTCCTTCGTCACGAACTTTACGTCGTTGTCCTCT
ACCTGCGTTCGACCGTAACTCGTTATCCATTTGAGATTTCGTAGGTGCTT
GATTATTAATTTCAATTTGACTGTCCACGAAGCTCTGGACGTATGATCGC
GAAGGATCATTATAAGGTGATGGTGACTGATGGGCGTTATCTGTTGGTTG
ACCTAATGCACTTTGGAAAGGATCGATTTCGTCAATATTGCGACCGTCAT
CAGTTCTGCCATCACTACTACTACTACTACAGCCAGCATCTGATCTGTTT
ATTTTCTGTCGAAATCTACCACCATCATCAGATAAATCATCACTGTCACT
ATTTTCACCAGAATCGGATCCGTAAGGATTTGGTACTCGTTGATTTTCAT
CTAGCAATCCATGCTGATCAAAGTTTCGATGAAAGATGTGCGGAAATGGA
AACATTTCAGCAAAGATGCCTCTGATACCATCATTTGGCGCAGCCAATAT
AACCAAAGCTACATTCAAAGCCGGATAAAACAAACTAAATATCATTGCCA
CAGCTGAATTTCTCCTTAATAGATCATTGGTCCCATTAATGAAATCTGAG
TCCTTGTAAAAAGAGCTACAACTTCCATTGGTGAAGTTAGATTCGGTGAA
ACAACTGCATGGTAATCTCAGTAACGGATTCATCTCATAAATGACAGCAG
TTACTGGAAGGTAAATCATCAATACAAGACCAAAAAGTGCTGTCTTCAAG
TCGACACCATTGTGGCGGTACCACGAAATAAACTCGAATAGCATTGCAGC
TAATATACAGACACCAAATAGAATGATATCCAATAAGAAGATGTTTACAA
AGAAAGCAAAACAACATACGCCACCAGCCAAGATGAATGAAAGGCATTTA
GGAAAACATGTAATTTGACAACCCATATCCATTCTGTTTACATTGTAAGC
TTTGAAGGCGTTGAATAACAGAAGAGAAATAGCAGACCCAACAAAGATTA
AAAACGATAGTCTCCCAAATTTGTGAAGCCTTGAACACCATTCGTTTACG
TTCGTGTAAAGGTCTGTGAAATGACATAAGAAAACGAGTACACAGGTTCC
AAACAAAAAAACATTAAAAATCAGCATTTGTTGTAGTAAGAAGAATTTAC
TTTCACGCATTCTATCAAGAATGTATATTAAGACTAGATTAAGAATCAAT
GTCCAAAAAATAAAGATTCCAAGCGCAGCATAATTCAAATCTTGGGAATC
GTCATCAATGTGAATTTGATAATACTGTGATGGTGCTGCAGACGTTGTGG
TGATATTCAAAGAAACATTTCCATCGGATGAAGTCATTGGTGCCTTTGAT
GAGATGATACTGACGCTTGTCAAAGAATACAGCCATAACCAAAGGTAAAC
GATGGAAGCCAATACAAATAGTAGCAAAAGGACACCTCTCATTCTTTAAA
TCTTTCTCCGCAAGCTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066974-exon-scaffold_462-1575043694:323599..325419 | TCONS_00066974-exon-scaffold_462-1575043694:323599..325419 | Clytia hemisphaerica | exon |
| TCONS_00066974-exon-scaffold_462-1510915933:323599..325419 | TCONS_00066974-exon-scaffold_462-1510915933:323599..325419 | Clytia hemisphaerica | exon |
| TCONS_00066974-exon-scaffold_462-1491911889:323599..325419 | TCONS_00066974-exon-scaffold_462-1491911889:323599..325419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:323599..325419 - |
Blast
The following BLAST results are available for this feature:
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