TCONS_00066970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066970
Unique NameTCONS_00066970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066970 ID=TCONS_00066970|Name=TCONS_00066970|organism=Clytia hemisphaerica|type=transcript|length=1744bp
ATCACAAGACAACGGCATGGTATAAGTGACAAGCTAACATTGATTCCCGA
TATTTCACGACCCAATTTGGTTAagaatgaatttgaaaatttagggATGA
ACAGGCAATGCCTCACTAATGGTGTAGCACGAACGATAGCCTCGTCCGTT
GGAGGAGCATCTAAATTGAATTGTTATACTGGTCAAGAATATCAAAGTCA
AGAAACGTGTTCGAATGGATTTCTAACAATTGCAGCTGAATCACAGACGT
CCAGTCTTAGGTGTAAAGTATCAAACATAAACGATATCTACATCTGGGAT
AGGAAGGAGCTTCtgaaattcaatttcaaagatTTGGAAGATGAGCTGGA
AGCCAAAGATAGTTATTTCGTTTTCAAGACGAGAAGCAAATGGGATGGAT
TACTGGTCCAAATATTATATCAATGTCAATCAACGACAGGAAACCTTGCA
AAACAAGAATTGTGTACAGTGATGAAATTTACTGGCATAAGACACCATCC
TCTACCAAACAAGATCGAAGAAATTTTATACGGCGATGACACACGACCAT
TCACGCCAACGCCTACAATACAAACAACAGGGAATAATACAACCATCGTT
GTTGCAAAGTCTCAAAAACTTAGCAATGGTATACCAACAGGCACAATTAT
AGGGATTTCTATAGCAATTGTTATCGTTTTGGTGGCAGCTTTATTGATCT
TAGCTCTCGCGTGCTATCGAAAAAGGAAAAAATCAAGGAGCGATAAACAT
AAGGATCCTGCGTACAACAGCTTCAAGCGGAACCGTAAAGAACAGAATCT
TAATGGAGAAACATCAACATTATACACagaacctaaaaattttctaCCAG
AATACAAAGAGCTAGAGCCAGGAGAGAtccaaaagaaaaatcaagGCACA
CTTAACAGTGACACCTATCATTATAGCCGAGCTCGTGACACTACCCCTCG
TCGAATAAATGTTTTGAAAGGCAACCATGACAACCACTCAAATGATAGCA
CCTTAAGTGGTGGTTATAGTACGGTGAAGAATATCGATGTAAACCAACCA
AAAAATCAAACGAATGAAGCAGTGATTGGCCATCGAATTCCTGGGAATGA
ATATGCAGTCGCACCAATAGAACATGAAAACGTTACACAAGACAATAAGA
GGAATCATAAACCATTGGACAGTGGTTACAGTTCAATACGTTTTGACCAG
GAGAAAGGTAAAACAGCGTTGGGAAAGGACTcgaagaaaagaacgttgaa
tTATTATAGTACACCGATCAGTGATCGTCCAGAGACTCCACCAGAGATTG
CAAAATTGTACACCAAAGTCAATAAAAAGAGGTGATTCATCAACAAAAAT
TAGACTGTATGGTGCGATCTATGAATTGCTGACTGTTTCCATGTTTATTA
CACGAATGAAAAGATACATTTTAATCGTGTTTACAAATTATAACAAAATG
AGACTGCATTGGACTGTGTTCTAATTCAATTTACCATTGTTGAAATAAAC
TAAAAAGACCTGCAAAACTCGACTTCTACCTTTGATATTAATAAAATGTC
CACGATAGATGATTTTATGGTACAGGattggacaaaatttcgcgaaatac
acgttgtttataagaacacaaggttCAATTTTAGTCAAAACCTAAGAACG
ATCCCAGTCTCAGATTTCAGAAAACTTATAAGAAAACTTGTAATGAATGA
TTGAATGTATGTAGGCGACATATGTTTCGAAATTTCATGTTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_462:250381..254403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066970 ID=TCONS_00066970|Name=TCONS_00066970|organism=Clytia hemisphaerica|type=transcript|length=4023bp|location=Sequence derived from alignment at scaffold_462:250381..254403- (Clytia hemisphaerica)
ATCACAAGACAACGGCATGGTATAAGTGACAAGCTAACATTGATTCCCGA
TATTTCACGACCCAATTTGGTTAAGAATGAATTTGAAAATTTAGGGATGA
ACAGGCAATGCCTCACTAATGGTGTAGCACGAACGATAGCCTCGTCCGTT
GGAGGAGCATCTAAATTGAATTGTTATACTGGTCAAGAATATCAAAGTCA
AGGTATGATATAGCCTGGAGATCCATGCTATGATTTCTTATTTTATATAC
TGATGGCCAAATATATAGCACGGTTAGGGTTGAGAGTTTGAATTTCCCAG
ATCCTAATAACGGTTGAAAACACAGCCAATCAAATTCTACTATTCTTTCA
CTGGTCACATTTTCTTAGAGAAAACGCAAGTTCCCACTGTCAATTATTTG
AGGCAGAAATCTGCCTCACAGCTCATACCGGTCCTGTATATATCAGATTA
TAAAAATACAGGACAGGTCTCCTGTCTAGGTATGATACTGAATTTTCTTA
TCGATTTCCATTGAACTGACTGATTCGAATTTTCGAAACGATATCACTTT
ACTCTTGGGGAGAATGACTCCTTCTACAGGGATTGGAGTATGTCAGATTG
TTTCTTTGGATAAGTTGACAGGATTTATAAAACCAAGACTCTTACACTCT
CCTATATCATTTGTCCCATGACAAAAGTCCAAGGATCTATAACTACTTGA
CTATAATAACGCAAAAGAAAGATACTGAAGGTAAATAATGCGACCAATAA
TATCAATAAACGAAGTATTACTTTTTTGATTTATAGAAACGTGTTCGAAT
GGATTTCTAACAATTGCAGCTGAATCACAGACGTCCAGTCTTAGGTGTAA
AGTATCAAACATAAACGATATCTACATCTGGGATAGGAAGGAGCTTCTGA
AATTCAATTTCAAAGATTTGGAAGATGAGCTGGAAGCCAAAGATAGTTAT
TTCGTAAGTAAAATTTATGACATGAACCAGAGAATATTTTAAAATCTTTG
TTAGCAGTGTTTTGTTTGACAGGTGTCTGCGCCTTTTTTTAATAAGAACA
TACTATGAACTTGTTATGAACAAGTTAAGAACAAGTTAAGAACGTTTTAA
GGCTTGGTGGACTCAAACGCCCAATTTCTTAGAAAAATTGGCAAAAACAC
TCACAAAATGGTGAAATTAAGAACATTTTTAGGCTTGAAACTCAAAAAGT
TAAGACCATCCGAAGGCTTCAAAAATTGTGGATGTTCTTATAAAAAAACG
TGTACTTCTGTGCAGTCGAGGTCGTGTTTTCATTCATTTTATCGATTGCG
TCCAGTCTCTTCTGAGTGTCTTTCTCAGCTTGTTTGAGTACACCAGATAT
CGTTAGTCTTATGCTCGCGAGATGCAACCGAACCACGGTGTATCGGCAAG
AGCTTTGATCACCGTATCTCATTAGAGTAGGTGACTATACTCTATACTAC
CTCATCGACGGGATAATTCCCTCCCTTTTTTAGCACGCATTATGTTGAAC
TGACGTAAAGTGTGATTTAATATTTCTGGTTTAGGTTTTCAAGACGAGAA
GCAAATGGGATGGATTACTGGTCCAAATATTATATCAATGTCAATCAACG
ACAGGAAACCTTGCAAAACAAGAATTGTGTACAGTGATGAAATTTACTGG
CATAAGACACCGTAAGATTTCCAATTAGTTAATACATGAAGTTTTAAATG
ACTTGTCATTCGTCATAACTTTAATCATCATAGTGATGACATTGAGTTTG
TTAAGCAATCTCCAGATCCCATGGTTGAACGTTTACCATCGATTTTTATT
TCTGAAAAACTAAACCGCTGCTGCACCGCATCCCCTTGAATACTTTAGTC
AGAAACAGACAACGTTTAGAATTCTGTGAAGCTGCTATTTAACTCTCTAT
TTAGAGATAATTCTTAAAAATTTTGATATGAAAACAATGTTGCGCATTAA
TCTTTCCAGACAAAATGAATAGCCCAAAAACAGTACAATCACCCGGCCGT
GCTGAGAATTTTTTTACAAGTAAAGACCGAGATTGCGTTTCAAAAAACAA
CCCGGGTAAAATCTTTATCTCCGGGAATGTGTAGAAACTGGTATTTTATA
CTTTCAGATCCTCTACCAAACAAGATCGAAGAAATTTTATACGGCGATGA
CACACGACCATTCACGCCAACGCCTACAATACAAACAACAGGGAATAATA
CAACCATCGTTGTTGCAAAGTCTCAAAAACTTAGCAATGGTATACCAACA
GGCACAATTATAGGGATTTCTATAGCAATTGTTATCGTTTTGGTGGCAGC
TTTATTGATCTTAGCTCTCGCGTGCTATCGAAAAAGGTAATAAAAAACAT
TATAGGTAACTTCAAAAAAGTATCCAGTGCTTCATAATATAAATTGTACA
ATATAAGAACAATTTTATGAGAACAAGGCTCGATTATGGGTATTCCGGGT
AAAACTAATGATAAATTATAAGAGCAATCCAGAATACAATACAATCAAGA
GAATTCAGATGGCAAAGAAAATGCTGATAAGCATATTCTAAGTCAATAAG
TGAACATCTTAAGAACATTTAAATGAGAACAACTAAGAACATTTACTCTT
TTTCTCTAGGAAAAAATCAAGGAGCGATAAACATAAGGTAAGATTTTAAA
TGACATAGAGTTGATTGTTTCAATAACATGCACATGTATTTTACGAATTT
AGAAACAAAACTCTTTACTTTAAGTTCTTTTATCATATTTTGTGTATCAT
CTTGTCCAGTTTAATTCTATTAAATTTGGTTCTCTCGAAAAGCCTAGTGA
TTTGCCCAGCTCGAGACCGAGCTTCATCATCAGTACTTTCGCGTTAGGGG
CCAGATTTTCCAAAAACTACCTTCAGAAGACATCAGAATGTACATGAATC
AAAAAGGTGAATAGTTGAATCCTAGACCGATATTTTGAATCAACAATAGC
TTAATAAAGGAAACGTCTTCAACTTTAAATGTGGTTGGCAATCACTTATA
TTAAGGTAAGCTGTTATTCATCATCGTTCTAGGATCCTGCGTACAACAGC
TTCAAGCGGAACCGTAAAGAACAGAATCTTAATGGAGAAACATCAACATT
ATACACAGAACCTAAAAATTTTCTACCAGAATACAAAGAGCTAGAGCCAG
GAGAGATCCAAAAGAAAAATCAAGGCACACTTAACAGTGACACCTATCAT
TATAGCCGAGCTCGTGACACTACCCCTCGTCGAATAAATGTTTTGAAAGG
CAACCATGACAACCACTCAAATGATAGCACCTTAAGTGGTGGTTATAGTA
CGGTGAAGAATATCGATGTAAACCAACCAAAAAATCAAACGAATGAAGCA
GTGATTGGCCATCGAATTCCTGGGAATGAATATGCAGTCGCACCAATAGA
ACATGAAAACGTTACACAAGACAATAAGAGGAATCATAAACCATTGGACA
GTGGTTACAGTTCAATACGTTTTGACCAGGAGAAAGGTAAAACAGCGTTG
GGAAAGGACTCGAAGAAAAGAACGTTGAATTATTATAGTACACCGATCAG
TGATCGTCCAGAGACTCCACCAGAGATTGCAAAATTGTACACCAAAGTCA
ATAAAAAGAGGTGATTCATCAACAAAAATTAGACTGTATGGTGCGATCTA
TGAATTGCTGACTGTTTCCATGTTTATTACACGAATGAAAAGATACATTT
TAATCGTGTTTACAAATTATAACAAAATGAGACTGCATTGGACTGTGTTC
TAATTCAATTTACCATTGTTGAAATAAACTAAAAAGACCTGCAAAACTCG
ACTTCTACCTTTGATATTAATAAAATGTCCACGATAGATGATTTTATGGT
ACAGGATTGGACAAAATTTCGCGAAATACACGTTGTTTATAAGAACACAA
GGTTCAATTTTAGTCAAAACCTAAGAACGATCCCAGTCTCAGATTTCAGA
AAACTTATAAGAAAACTTGTAATGAATGATTGAATGTATGTAGGCGACAT
ATGTTTCGAAATTTCATGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041846XLOC_041846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066970-exon-scaffold_462-1575043694:254202..254403TCONS_00066970-exon-scaffold_462-1575043694:254202..254403Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1575043694:253451..253617TCONS_00066970-exon-scaffold_462-1575043694:253451..253617Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1575043694:252743..252869TCONS_00066970-exon-scaffold_462-1575043694:252743..252869Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1575043694:252068..252296TCONS_00066970-exon-scaffold_462-1575043694:252068..252296Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1575043694:251767..251794TCONS_00066970-exon-scaffold_462-1575043694:251767..251794Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1575043694:250381..251371TCONS_00066970-exon-scaffold_462-1575043694:250381..251371Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1510915933:254202..254403TCONS_00066970-exon-scaffold_462-1510915933:254202..254403Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1510915933:253451..253617TCONS_00066970-exon-scaffold_462-1510915933:253451..253617Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1510915933:252743..252869TCONS_00066970-exon-scaffold_462-1510915933:252743..252869Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1510915933:252068..252296TCONS_00066970-exon-scaffold_462-1510915933:252068..252296Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1510915933:251767..251794TCONS_00066970-exon-scaffold_462-1510915933:251767..251794Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1510915933:250381..251371TCONS_00066970-exon-scaffold_462-1510915933:250381..251371Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1491911889:254202..254403TCONS_00066970-exon-scaffold_462-1491911889:254202..254403Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1491911889:253451..253617TCONS_00066970-exon-scaffold_462-1491911889:253451..253617Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1491911889:252743..252869TCONS_00066970-exon-scaffold_462-1491911889:252743..252869Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1491911889:252068..252296TCONS_00066970-exon-scaffold_462-1491911889:252068..252296Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1491911889:251767..251794TCONS_00066970-exon-scaffold_462-1491911889:251767..251794Clytia hemisphaericaexon
TCONS_00066970-exon-scaffold_462-1491911889:250381..251371TCONS_00066970-exon-scaffold_462-1491911889:250381..251371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:250381..254403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.320207	0.369447	0	0	0.038953	0.265373	0.187329	0.138535	1.25088	2.2905	0.305256	0.40999	0.635542	1.31599	5.47218	5.62382	1.80755	1.81195	0.583008	0.587107	0	0.681973	1.58459	0	0.725574	1.25334
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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