TCONS_00066960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066960
Unique NameTCONS_00066960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066960 ID=TCONS_00066960|Name=TCONS_00066960|organism=Clytia hemisphaerica|type=transcript|length=1454bp
AGCtaaataactgaaaattcacgacatgataagaaaaaaagaaaATCCAG
TAGATCTTAGTCACCTTGGAGAATCGAACACTGAATCAGATACTGcatca
aagaaaaaatatttaccaGAGATGGCAACAACTACATCGACCACCACaga
tgttttgaaaacgttGGAAAGTCAACAACCGAACAACCAAGATACAGAGA
ACAATATGTTTAATTCAACCACTGGGATTATTGTTTCAACCATCGCAGCT
TTGACATTGATTTTACTGGTAGTGGCAATCATTCTGTTTAAACGAAGCAA
AATGAAAAGACGAAGAAATGATTCAGCTGCCAGCATCGAGaCACCAGAGA
TTGCTTCCGTATGCTCGTTATCAAGTAAAATGGATCCCACATTCTGTTCA
CCAGCATTAAGCAGACACAGTCTGGAAACGATTATCACAGACGGTAGCGA
CCAGGAATCGCAGAATGAGAATATTTACCAGCAACCAGACGATGTCGTCA
AATCGAACTCATACAAACGACATTCTAACATACCAGCTGCTTATTTCCAA
CAGATCAGTTTAGATTATGAAAATCCTGATGATGTGCGTCAACAAGTTGA
GAATCTCAGCcctgaatatcatgaattagagATTGAAGATTTACAAAGAA
GGCCAATGCCACAACGTAGAAACGATGAGATCAACGACGATAATGTACAA
CAATGGAAACCAAAGTTACCAAGAAAGCCAACCATCCTCCAAAACATTCA
AAGTAACCGACAATTGCTTAATAATGGTTCATTTGAATCTGATGAAGATT
ATTATAGTGAAGCTCTTGGAACTCCCAATCAAGTTTCACCCGACCAATTC
GAAGAATTGTACGCTAAAGTTGATAAATCACGGAAGAGACAAAATAACAG
TTAGAGTCTCATCATTTTtcgtgatcttcttcttcttctttttctcttgC
TTCATTGAGAAACCACTTTCAAAATGTACATAATCTTCTGCTGtaaatct
ttctcaaattttatataattatttattttaaagGATTGTAAATATAACCT
TAGTTTAACCATGGAGGTAATGAAATTATAGATGGAGAtaccactcctac
tattctattgtattgtatcgttgatagcaaactgttgctttgttgctttg
ggaaaaagcctttaattttgctttcgctcatgggaatacttgagtcgaag
agaatttgaataaaatcacgctacatttttaatttgttcattgtgtgatg
acaattttgtttataaaacataagaaaacctttcaagaataagcacagaa
catcgaatttgaaatgttcacTGCTCAGGGAACCCTCcgcaaattttgtc
aatttttacatatttactaatgcaaatctttcaactatattctatcaaaa
ttttgaggcagctgctattttagatctaaagatatttatagcaaagaacc
ttcc
Run BLAST on NCBI

transcript from alignment at scaffold_462:202499..204861-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066960 ID=TCONS_00066960|Name=TCONS_00066960|organism=Clytia hemisphaerica|type=transcript|length=2363bp|location=Sequence derived from alignment at scaffold_462:202499..204861- (Clytia hemisphaerica)
AGCTAAATAACTGAAAATTCACGACATGATAAGAAAAAAAGAAAGTAATT
AATGCCTTTTTTAACGGATGATTGAAAACATTGTCTCTTTTATAAAACTT
GACGTCATACTTAGAAAATACATTATGTGTAATCTAGAATGGAGATCTGG
GAGGTTAAGTAGGCATTCTAAGAGAAATGTGTTCCGTATTATGATTGCTA
AAGTAGACGAAATCTTATTAGTATTTCTTTATTGAAATTAAAATACTTGA
CCCTTGTGTCAATGACTGCAGGGGTAGTTTAATGGGCAGCTTGATGTCTT
CTTCAAGCATCAGATATTCATTTTTAGTCATTAGTGTGGCAAGTGGCAAC
AGAGGAGTCTAAAAACTTATATTTGGTTTTTAGCGATCCACTCATCAGAA
GCCCAGCTGATCTTAGTCAGATACGAAACCAAGGACAATAATCTGAATCT
ATATTTTTCAATTATTTTTCATTGCTTTCATAGATCCAGTAGATCTTAGT
CACCTTGGAGAATCGAACACTGAATCAGATACTGCATCAAAGAAAAAATA
TTTACCAGAGATGGCAACAACTACATCGACCACCACAGATGTTTTGAAAA
CGTTGGAAAGTCAACAACCGAACAACCAAGATACAGAGAACAATATGTTT
AATTCAACCACTGGGATTATTGTTTCAACCATCGCAGCTTTGACATTGAT
TTTACTGGTAGTGGCAATCATTCTGTTTAAACGAAGCAAAATGAAAAGAC
GAAGAAATGATTCAGCTGCCAGCATCGAGGTAAGAAAGTTTGGTTGTTTC
CTTGGTATTGTGTCAAATCATTATTAATCACTAGAACAATTTCGTTTTCG
CTTTCAATGAGCCATGAAGCTCAATTCTTTTCGTACTAATAATTGTGTAG
GAACGAAGGCATTTCGAAGTGTAATCAGATTGCACGAGCGATATTGTCTC
CCTATGCGATTATACATTACAGTTGAGTCGACATGACTCGAACCTATATA
GCTCAAATGTCTCCTTAACGGATGAGTTTTCTGGTCTCTTCAATTAAAAA
TGCCTTGTAAACCAGCGTCCATACCTCCAAGTTTCCCTTAATCGAACAAA
TTTACGTTCCCCGTGCGCGTTCGAGCTATGAAGACTTTACCATAAATGTT
ATGTTGAAAATTCCTCCTTTGTTCTGTTTTTGTTTCTTTTCGAAACGTTT
ATGAAGTACAAGGTAGAATAAATAAACAATCATTTTTTATTTTTAACAGA
CACCAGAGATTGCTTCCGTATGCTCGTTATCAAGTAAAATGGATCCCACA
TTCTGTTCACCAGCATTAAGCAGACACAGTCTGGAAACGATTATCACAGA
CGGTAGCGACCAGGAATCGCAGAATGAGAATATTTACCAGCAACCAGACG
ATGTCGTCAAATCGAACTCATACAAACGACATTCTAACATACCAGCTGCT
TATTTCCAACAGATCAGTTTAGATTATGAAAATCCTGATGATGTGCGTCA
ACAAGTTGAGAATCTCAGCCCTGAATATCATGAATTAGAGATTGAAGATT
TACAAAGAAGGCCAATGCCACAACGTAGAAACGATGAGATCAACGACGAT
AATGTACAACAATGGAAACCAAAGTTACCAAGAAAGCCAACCATCCTCCA
AAACATTCAAAGTAACCGACAATTGCTTAATAATGGTTCATTTGAATCTG
ATGAAGATTATTATAGTGAAGCTCTTGGAACTCCCAATCAAGTTTCACCC
GACCAATTCGAAGAATTGTACGCTAAAGTTGATAAATCACGGAAGAGACA
AAATAACAGTTAGAGTCTCATCATTTTTCGTGATCTTCTTCTTCTTCTTT
TTCTCTTGCTTCATTGAGAAACCACTTTCAAAATGTACATAATCTTCTGC
TGTAAATCTTTCTCAAATTTTATATAATTATTTATTTTAAAGGATTGTAA
ATATAACCTTAGTTTAACCATGGAGGTAATGAAATTATAGATGGAGATAC
CACTCCTACTATTCTATTGTATTGTATCGTTGATAGCAAACTGTTGCTTT
GTTGCTTTGGGAAAAAGCCTTTAATTTTGCTTTCGCTCATGGGAATACTT
GAGTCGAAGAGAATTTGAATAAAATCACGCTACATTTTTAATTTGTTCAT
TGTGTGATGACAATTTTGTTTATAAAACATAAGAAAACCTTTCAAGAATA
AGCACAGAACATCGAATTTGAAATGTTCACTGCTCAGGGAACCCTCCGCA
AATTTTGTCAATTTTTACATATTTACTAATGCAAATCTTTCAACTATATT
CTATCAAAATTTTGAGGCAGCTGCTATTTTAGATCTAAAGATATTTATAG
CAAAGAACCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041844XLOC_041844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066960-exon-scaffold_462-1575043694:204818..204861TCONS_00066960-exon-scaffold_462-1575043694:204818..204861Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1575043694:204083..204378TCONS_00066960-exon-scaffold_462-1575043694:204083..204378Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1575043694:202499..203612TCONS_00066960-exon-scaffold_462-1575043694:202499..203612Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1510915933:204818..204861TCONS_00066960-exon-scaffold_462-1510915933:204818..204861Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1510915933:204083..204378TCONS_00066960-exon-scaffold_462-1510915933:204083..204378Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1510915933:202499..203612TCONS_00066960-exon-scaffold_462-1510915933:202499..203612Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1491911889:204818..204861TCONS_00066960-exon-scaffold_462-1491911889:204818..204861Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1491911889:204083..204378TCONS_00066960-exon-scaffold_462-1491911889:204083..204378Clytia hemisphaericaexon
TCONS_00066960-exon-scaffold_462-1491911889:202499..203612TCONS_00066960-exon-scaffold_462-1491911889:202499..203612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:202499..204861 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (24.9432 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296934	0.35643	0.724393	1.04994	0.400634	0.231443	1.8687	0	0	4.48905e-09	0	4.62433	4.89885	6.79731	1.38794	1.39982	17.8316	24.9432	12.3536	17.8025	1.22818	1.23237	0.504187	0.451891	0.183571	0.762478	5.87425	0.641731	0.32844	0.424145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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