TCONS_00066959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066959
Unique NameTCONS_00066959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066959 ID=TCONS_00066959|Name=TCONS_00066959|organism=Clytia hemisphaerica|type=transcript|length=2113bp
CAGAAATGAAtaccttttattttttcagagaaaACCAATTATTGGTCGAA
TCTTAATTACCAAGTAAATCTATTCAAGGGTCATTATTACGTGAACTCAT
TAAATTAGGAGAAACTATTCATGTTCGTTTGTTTGTCAACTGATGCGAGC
TTTAAAAGAACTTCATAGTTAGTCTTTCTCGATGTGAAAGTCATTTAGTT
GTAAAACACAACACGCGAAATGAAATTTATCATTGCTTTGAGTTTGTCAT
TACTTGTAGTAAAGCGAAGAacagctttgaaaatttttcgggATAGATAT
GGAGATCAGGACCGGATACCTTTTCCAAAGTGTAATAATCTGAAAGGTGG
TGAAACGATAGGCATAGAGTATGGCACTGATTGTCTCTGTAAAGAGGAAA
ACAACACATTCTTCGACGAAGGTGGATTTGATTGTGCAAGTATGGAACAA
ATAAAAAGTCTTGAAGgttGTAAAAACTCTATTATAACTAAACAAACAAA
TGTGAAAGAAGAATTCAATCCACGTTGCACTCTGGAGAATGGTAAAGAAT
CGATAAAGATAATACTAAGGGATCATTCGGATTCCGGATCAACATGGACT
GACCAATTTTCAAGAAATCTGGTCCATGCATTGATTATCATAAATGATAA
TGGTATCATTAGCTTCGATCATAAACCAAGCTATTTTGTTGGGGTTCTCA
TAAAGATTGAATTCCAATGCAAAACGCAAACACCGACATGCATAATATTG
AAATCAGAGGGAGCACAAACGTaTCCCTTTGTTTATGAAGGACCAGACGC
ACCACCTCTACCAACGACAACCACGACAACGATCTCAACAACAACTAGTA
CAACCACAACACCTACAACAACATTACAAACTACGAATACGACTCTGCcg
acaacaacaacgacaaAAACACAAACGACAACAGAAGAAACGACAACCAA
TTCGCGATCAGCGATCGATGACAAATCAACCAGCAATGATGGTGAAGATG
ATGATGGATCAGTTATGGTAATCATTGTGGCAGTCGTTGCGGTCGGTGTC
ATATTCCTTATTTTACTCGTCGTTTTCATCGTTTGTCGTAAGAGaaggAA
TAACGGAAATGCTAAAGCATCATCGGCTGAGGACCTTGGTCGAGATTATG
CGAGTTATTCAAGCGAAATTGCCATCAATAAGACGGATCGGAACAAGAAT
TCGTTATCAATTGATTTGACAGATTCAGCAGAGTACCAAGACATCGGTAA
AACAACACCAAATTATATTCCCTTAGAATCTGCTTTCACTAATGAGGCAT
ATACGGATCTAGAGGGAAACAATCCGGAGTATAGAGAATTGGAACCTGAA
CCGGTAGTATATAATGTATTGGAAGAACCAGTATACCAGGAGACAAGCAA
ACCACTACCAAAAGAGAAACCAGTTTATCACGCTAACCCACAACCACCCA
TGGCTCCACCAGAGCGCAGCCGACAGCCCCCGAAACCACCAACACCTTAC
CAGCCAAGCAAGCCAGTCGTTTCTCCACCATCCAAACTTGAACAAGAAGA
TTATTATAGTGCGGCTGCCTCCCCACCACAAGTTCCACATGACATAGCAG
CGCTTTACGCTCCGGTTATCAAGCCAAGAAAATGAAAGGATggtttttgt
tagttttaaataaaaaaaccagTGGTTTCGTGTAGCGATGATGCTGTGAA
ATCAAGGTCTCATTTGAATTGACCATAAATGTCTATAACATTTCATAATG
TGTTTAGGATACTCGACCATAACCACCGTAAGCAAAACAACGTTGTTGAG
TGTATTATATCGTTTAGTAAAGATAACAATAACCTATTGTCTTGATCAGG
AAACTCAATGGTGAGAGCACCTGGGTTACTTGATGAGCCACCTAAAGAAT
GACCCTCTCTCGTGAGCCACATTATTTTATCCCATAAACATCCTATAGAC
AACATCTTTTGGGTTCAGAAAGTATTTGTATGATAAACCTGTTAAGAagt
atcgttttttttttattgtaaatctTTTGAGGTAAGCCTCGTCTTGATGA
TTTGTATTAATCAGTATTAATAACTCCAATTATTGAAAAGAacatttaaa
atgaattttcaaa
Run BLAST on NCBI

transcript from alignment at scaffold_462:185024..189789-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066959 ID=TCONS_00066959|Name=TCONS_00066959|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at scaffold_462:185024..189789- (Clytia hemisphaerica)
CAGAAATGAATACCTTTTATTTTTTCAGAGAAAACCAATTATTGGTCGAA
TCTTAATTACCAAGTAAATCTATTCAAGGGTCATTATTACGTGAACTCAT
TAAATTAGGAGAAACTATTCATGTTCGTTTGTTTGTCAACTGATGCGAGC
TTTAAAAGAACTTCATAGTTAGTCTTTCTCGATGTGAAAGTCATTTAGTT
GTAAAACACAACACGCGAAATGAAATTTATCATTGCTTTGAGTTTGTCAT
TACTTGTAGTAAAGCGAAGAACAGCTTTGAAAATTTTTCGGGATAGATAT
GGAGATCAGGACCGGATACCTTTTCCAAAGTGTAATAATCTGAAAGGTGG
TGAAACGATAGGCATAGAGTATGGCACTGATTGTCTCTGTAAAGAGGAAA
ACAACACATTCTTCGACGAAGGTGGATTTGATTGTGCAAGTATGGAACAA
ATAAAAAGTCTTGAAGGTAAGTGAGGAAAGTGTTGTTTTTTTATTTTAAA
GGAAAGAAACAGGATGTTATTGATTGTATTAACAATATCAATAATTTAGA
AACTCGTTGGGTATAGATTTGAGAAAAACTATCCACCCTACTTCCATAAT
TTCAAAGCTGTCTGTTCTTATAACATTGTCTTTACGAAACAGTCGAAGGG
AAATCAAATCGTATAAGAATGAGCATCAAAATGTATATTAAATTTGAGAA
ACATTTTTCTGACTTTCATTATTTTCTTTTTATAAGGTTGTAAAAACTCT
ATTATAACTAAACAAACAAATGTGAAAGAAGAATTCAATCCACGTTGCAC
TCTGGAGAATGGTAAAGAATCGATAAAGATAATACTAAGGGATCATTCGG
ATTCCGGATCAACATGGACTGACCAATTTTCAAGAAATCTGGTCCATGCA
TTGATTATCATAAATGATAATGGTATCATTGTGAGTTTTATTATTAGATT
TGGAAATAAATTTTCACCTTGAAGATTATTAACACTGTTAAAGACATCTT
AAGAATAATAACCGAGAATTTTTACTTTGAATGATGCAAGCCTTCATATT
GAGCAAAAAGTCAAACTTATAATACTTAACCTTCTAAAATTCCTTCCGTC
CATTTGTCTTGTATATATAATTTAATTGCAGAGCTTCGATCATAAACCAA
GCTATTTTGTTGGGGTTCTCATAAAGATTGAATTCCAATGCAAAACGCAA
ACACCGACATGCATAATATTGAAATCAGAGGGAGCACAAACGTGTAAGTT
AACATTTAGAGAATTAAGTCTTTAAAAATTCAAAAAATAATTAAGATGTT
GATACAGTTGACGCTCTCCGATTCGGGAATTCAACTTTCATCGAAAAGGA
TCGAACGTCGTTTATGAGATTTTCTCGTTGAAGGTGGCTTTAATATTATC
GAACAATGGAGCGTATCGAACAGTAGAAAGTTGAATTAAAGAGTCTGAAC
ATATTGAGAGATTTAATGAAAAGCAAGAGTTATAGTGAAATCAGATGATG
AATCAATAAATTAAAACGAGTCTTTCAAAAATAAATTTATCTTTGTTTTC
TTTAGATCCCTTTGTTTATGAAGGACCAGACGCACCACCTCTACCAACGA
CAACCACGACAACGATCTCAACAACAACTAGTACAACCACAACACCTACA
ACAACATTACAAACTACGAATACGACTCTGCCGACAACAACAACGACAAA
AACACAAACGACAACAGAAGGTACTACTTTAATCACTACTCCACAAGAGC
CTCCCACGACCACTGCTCAGTCCACCAATGTGGCAATTCAGTCCACTACT
GTAAAGAGAGAGTCTTCCTCTCCACCCACAGCGCCTCCGACACCTACCAC
TCAACCAAATCCCTCGACAACAGTCTTACAACAACTTTCCACTACAAATA
CAGAACCACCAGAAAATTCTATACCTTTTTCCAGTACCAAAGTCCCAAGT
GAAGGTTTGTAGATTACCAAAACGCCAATCTTGATATATCTTTTTATTAG
GCAATTTTCCTTTTTCCTAGTTCCTATGTATAGCTTTCATTTGACGAAAC
CAAATTTAATTGGATGTTAAACTTCCTACATAAAATTGGATTTCTTGTTT
GTCAAAAATATTGAACAAAGATTGACAGTCAACTTTATTAAGATCTTTTA
GCCCTGCCAATGTCCACATGGTCATCGGCCTCTACCTTTTTTTGCAAAGA
AAAACTATTGAACTTTCCTATTATTTCTCTATTATAGTATATATTATTTA
GCGCCTCACGTTATTTTTATCTAGACCGCAAATTCTCACTTGAATCTATA
CTATTTTTTCATGTTTCAGAAACGACAACCAATTCGCGATCAGCGATCGA
TGACAAATCAACCAGCAATGATGGTGAAGATGATGATGGATCAGTTATGG
TAATCATTGTGGCAGTCGTTGCGGTCGGTGTCATATTCCTTATTTTACTC
GTCGTTTTCATCGTTTGTCGTAAGAGGTAAGGACAGTTTATTATGATTCA
GAGCATTTTCATCCTCATATCGTACAGAAACCAAATAAAGCCGTTCTATT
GGTTATAATTGTCGTTCTTCCTGTAATTGGCCGATAAAATACAAGTGCAT
TGCGTGTGAAGCGGTGTTATATTTTTTTTTTATACCCACTGTCAAAGCGA
GGTTTCACGTCTGAGACGGAAAGTGGATTTTACACAGAGAAATAGCAAAA
CTACGCATAATTTTGAGATGAAAAAGCCTCACAGAGAAGAAAATACTTTT
AACACTTTTTATAATCTTTTAATAAAAGTGTTTCTGCAAGCCACACAAGT
AGAAATGGAAATTTTTGGGTAGAAATACAGCTTCGATATAAAAACCATGG
AACTTTTAATAAATTAACTTTTAACTTTGTGGCAACAAGAAATTGATTAA
AAAGCTTCTCAACCAGCAATTTTATGAGGAAATAATTCTATGGCAAACAA
ATTGCCTGGAAAAACAAGTATTTTCGATTTGATTTATAGAAGTGACGCCT
ATTTTAAAGGACCATATATTTGTTATCAGCAAATAATAGCTTGCATTCCA
AATAATAAACATAATCATACTGTTGTTGGGTCAAATATTAAAGAATGGTT
TGTTTGACATAAAACATAAATACTGCATACCAGAGCAAATATATCATAGA
AGTGTAGGATGGCACAAAAGCCCTGAGTAAGGCTCGTAATTATCTTAGCC
TCATCAAACCTGTCATTAAAACATTTTAATGACTCTTTTGTTTGTGTTTT
TCTTTTTCAGAAGGAATAACGGAAATGCTAAAGCATCATCGGCTGAGGTA
AGATAATTTAAAAGCATGTGTGCGTGGTTGATTTTTCTAATTTACCGGAA
AGAAATTAAAACCTCAGAGCCTTGACATTTGTGCAAGATATAATTAATAT
ACTAAGAACAAAAATTTCCTTAGCATGAGCTTCGGCAAATGGCTAAGATA
GGCAGATATCAATTGTTACTTTCGGTTGTGCGACGTCAAAAGCCATAGAT
TGATTAATATGAAAGAAACATTAGTTTTTAATTGCAATGATAGACCACTT
TATTTAGCGTCAATGTTTTTTGAGCAAAAGATCCGATTGTTTTCTTACTC
TTTACACAAGCAAGATAGGTATCAGCAAAATAGCATTGTTAAGTCTTTCG
AAGTATTTTCGTTTAAATGATAAATTTCGAAGGTAAAAGAAGTCTTTCTC
TTAAAACAACTTGTTTAAGGCGTTTCAAAAATACGCGTTAATATTCAATC
ATTCACTGAGGATATTATCATCATTCAATTCCAGGACCTTGGTCGAGATT
ATGCGAGTTATTCAAGCGAAATTGCCATCAATAAGACGGATCGGAACAAG
AATTCGTTATCAATTGATTTGACAGATTCAGCAGAGTACCAAGACATCGG
TAAAACAACACCAAATTATATTCCCTTAGAATCTGCTTTCACTAATGAGG
CATATACGGATCTAGAGGGAAACAATCCGGAGTATAGAGAATTGGAACCT
GAACCGGTAGTATATAATGTATTGGAAGAACCAGTATACCAGGAGACAAG
CAAACCACTACCAAAAGAGAAACCAGTTTATCACGCTAACCCACAACCAC
CCATGGCTCCACCAGAGCGCAGCCGACAGCCCCCGAAACCACCAACACCT
TACCAGCCAAGCAAGCCAGTCGTTTCTCCACCATCCAAACTTGAACAAGA
AGATTATTATAGTGCGGCTGCCTCCCCACCACAAGTTCCACATGACATAG
CAGCGCTTTACGCTCCGGTTATCAAGCCAAGAAAATGAAAGGATGGTTTT
TGTTAGTTTTAAATAAAAAAACCAGTGGTTTCGTGTAGCGATGATGCTGT
GAAATCAAGGTCTCATTTGAATTGACCATAAATGTCTATAACATTTCATA
ATGTGTTTAGGATACTCGACCATAACCACCGTAAGCAAAACAACGTTGTT
GAGTGTATTATATCGTTTAGTAAAGATAACAATAACCTATTGTCTTGATC
AGGAAACTCAATGGTGAGAGCACCTGGGTTACTTGATGAGCCACCTAAAG
AATGACCCTCTCTCGTGAGCCACATTATTTTATCCCATAAACATCCTATA
GACAACATCTTTTGGGTTCAGAAAGTATTTGTATGATAAACCTGTTAAGA
AGTATCGTTTTTTTTTTATTGTAAATCTTTTGAGGTAAGCCTCGTCTTGA
TGATTTGTATTAATCAGTATTAATAACTCCAATTATTGAAAAGAACATTT
AAAATGAATTTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041843XLOC_041843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066959-exon-scaffold_462-1575043694:189324..189789TCONS_00066959-exon-scaffold_462-1575043694:189324..189789Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1575043694:188860..189053TCONS_00066959-exon-scaffold_462-1575043694:188860..189053Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1575043694:188547..188658TCONS_00066959-exon-scaffold_462-1575043694:188547..188658Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1575043694:188070..188234TCONS_00066959-exon-scaffold_462-1575043694:188070..188234Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1575043694:187314..187470TCONS_00066959-exon-scaffold_462-1575043694:187314..187470Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1575043694:186493..186529TCONS_00066959-exon-scaffold_462-1575043694:186493..186529Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1575043694:185024..186005TCONS_00066959-exon-scaffold_462-1575043694:185024..186005Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:189324..189789TCONS_00066959-exon-scaffold_462-1510915933:189324..189789Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:188860..189053TCONS_00066959-exon-scaffold_462-1510915933:188860..189053Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:188547..188658TCONS_00066959-exon-scaffold_462-1510915933:188547..188658Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:188070..188234TCONS_00066959-exon-scaffold_462-1510915933:188070..188234Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:187314..187470TCONS_00066959-exon-scaffold_462-1510915933:187314..187470Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:186493..186529TCONS_00066959-exon-scaffold_462-1510915933:186493..186529Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1510915933:185024..186005TCONS_00066959-exon-scaffold_462-1510915933:185024..186005Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:189324..189789TCONS_00066959-exon-scaffold_462-1491911889:189324..189789Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:188860..189053TCONS_00066959-exon-scaffold_462-1491911889:188860..189053Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:188547..188658TCONS_00066959-exon-scaffold_462-1491911889:188547..188658Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:188070..188234TCONS_00066959-exon-scaffold_462-1491911889:188070..188234Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:187314..187470TCONS_00066959-exon-scaffold_462-1491911889:187314..187470Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:186493..186529TCONS_00066959-exon-scaffold_462-1491911889:186493..186529Clytia hemisphaericaexon
TCONS_00066959-exon-scaffold_462-1491911889:185024..186005TCONS_00066959-exon-scaffold_462-1491911889:185024..186005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:185024..189789 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (6.3012 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0908519	0.295366	0.333059	0.025128	0.0992824	0.095824	0.112137	1.1985e-08	0.252841	0	0.322651	6.3012	4.65449	2.66709	2.85425	0.553221	2.28271	0.534805	0.301917	0.0540471	0.0790868	0.0427291	0	0	0	0.0766497	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Sequence
Match NameE-valueIdentityDescription
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