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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066943 ID=TCONS_00066943|Name=TCONS_00066943|organism=Clytia hemisphaerica|type=transcript|length=486bp CCAGATcacaataaacaaaataaacagagAATTCAATTGAAATAAATACA AGTCTTGGTGATGCACTTTTGAAGCTGCAAAAAGCATATGTCAATTGTTG AGGTGTGCAAGGGATGGGATTGTTGATATCGGAAATAGAATTGATTGGAA ATCAATAATCTCCCTTCATGTCTTCAACTCCAATACCCCTCAACAAAGTA TCCAATGGTGTccataaaaacaaaagattagagGGGTATTTTGAAGATGC GGCAACTGGGCTCATCAACAAAAAACTACCCAAAGAGCTCTTACTAAGgg TTTTCTCCTTTCTTGATATTGTTGCTCTATGTCGANCTcaattgatttat tttctttttgtaggGTTTTCTCCTTTCTTGATATTGTTGCTCTATGTCGA TGTGCTCAAGTTTCTAAGGCATGGAACCTCCTTGCACTTGATGGAAGTAA TTGGCAACAAGTTAACCTGTTTGAATTTCAAAGAGA Run BLAST on NCBI transcript from alignment at scaffold_462:24631..32861- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066943 ID=TCONS_00066943|Name=TCONS_00066943|organism=Clytia hemisphaerica|type=transcript|length=8231bp|location=Sequence derived from alignment at scaffold_462:24631..32861- (Clytia hemisphaerica) CCAGATCACAATAAACAAAATAAACAGAGAAGTATGAATCTTTGAATATA
CAATTTTTGTTTTTTGTACGATAAAATCTCAATTACCCAGAAGGAGCATG
TATTATTTCAAAATTCCTGGGAGGGGGGGGCTGTTGAAGCCAAGAAAGGA
AAAAAAATTGTGATCTGTTTAATACGGTATTGCTATTGGGTATTCGGCAT
ATTCTTAAGTCTGGGCCAGGGGGGGGTCCTATACATCACGGTCTATTGTC
AACTATTGTCCAACCCCGTAAGCGATTGAAGTGCTGTCAGTTGTCAGTAT
TAATCTGAGAAGAGAACAATAGTAACATAGGCGATGTGGTGGTATAGTGG
TCATTGACCTTGGCAGTTACATCAATATGCCTTCTTACCTGTCTTTAAAA
ATATAAATAAAAGTAATCACGGAAAAGGATGCGAAAAAAAAAGACATAAG
TGTGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTTTGTCTCGG
CCTTCTTATAATGAGCGAGACATACGTTCTCTGATTACGCAATTTTCATA
TTGACATTTTCGAGGCATTTTGATGTAACTGCTTGGTTGCTGCAGGCGAC
TGAGGTTCGATTCCCACTCGCAGCGGTTCACTTGGCAAGTGAATGAACCT
TCGCCCGGGTCAACCCATTCCATGTGAGGGAAATTGGGTAGTCAGTCCAA
GCCAAGGTGAGTTGCGAAAATAGGCCTCAAAGCCTCCTGCAACTCAACCA
AATAGAAATAGAAAACCAGACGATGTCAATCGAACAGAATCGAACGAAAA
TTCCAATCGAATCAACCGAATGCAATCGAATATCAATCGAACGTAAAATT
CTGGGTAAAATTTGATTGATTCGATTGATATTCGATTACGTTCGATTGAT
ATTCAATTACGTTCGATTGATATTCCATTACGTTCGATTGATATTTGATT
ACGTTCGATTGATGTTCGATTACGTTCGATTGATGTTTGATTACGTTCGA
CTGCGTCTGACGGGTGGTCGATTAAATTAGATTCCAATTTACCTCAATTC
CTTTCAATTTCGAGCGCCTCTTATCAGGGAGGTTAAGTATCAATACGATA
GATAAATCAACGCAACGAACGGGCTTTGACACACAACCTGCAGTAAACAT
GTGGGCCTGCATGATCTGCATTTTCTAGAATCCAGGCTAAAATGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAACTCTTCAAATGTTGAACGAGAAT
CAACGTTAATCAACAGAATCAATTAGTCGAACCAGTCGAATGCATAAGCC
AACCGAACGTAGTCAAATCAATCGGATCAATCGAATACATTAGTCAATCG
AACACAATCGAATCAATCGAATCAATCGATACCAAGCACTAATCGAATGC
AATCGAATCAATCGAGAAAATCGCGGCAACATTCGATTGGCATTCGATTG
CGTTCGGCAATCGAATTTCAATCATTCGATTGCGTTCGATTGCGTTCAAT
TGATTCGGCGTTCGATTCGTTCGATTGACATCGTCTGGAGAAAAAGACAT
CTACCATGGTATCACACAAATAAATTACGCTAGGAAAATCTGTGAGGGCA
ACACTCGGTCTTAACATTTTTCCCTTGCAAGTTTGGGTGGAAAACAAAAG
TAATCTATATGGGGAAGTGGAAGAATAATTTACGTTGCGTTGCTGGAATA
TTTTTCTTTTGGCCTTGTTGTTCTAGTTCTATTGAATACATATTGGTACA
GATTAGTACATTTTTGCAATTTTAAGCGTATAGGATAAAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAATATTAAATT
ATTAAATATTAAATATTAGTTAAAATATTAAATTATCCATGTTAAGGATT
CCAGGACGATTGGAAAGATATTCTACAGAACCGACAAATCTTTTTATATA
GAGGAAGCTCCCAACCCTACCAGTACCCCTACAAGCAGTCTATACTTTAA
CTCCCACCTTATTGGAACTAATTTTTGCGAGAACTAATTTTAGCGTTTTT
CGCGGTTTTTCGTCAAAATCGCGAAAATTTGAGCCCGCAAAAGAATTTGA
GAGTTAAAAACCGCAAAAATTAATTCTCGCGAAATACAATTTTTTCCAAT
TTTATCGAAAAATTTGAAAAATCCCTAGGAAAATGAAAGAAATTTTTCCA
AAAAGGGCAAAACCGCTAAAATTAAAACCCGCAAAGTCCAATTTTTCGGA
TATTTTTTTTCGACCGCGAAAATTTGTTCCAATAAGGTATATCAGGATTA
CAAACTAGGCTAGTCTTAACTATTTTTCATATTGAAATCTGCAACAAAAA
CAAAAGTGGTCTCTTCTACTGATTGCGTGACACTCCTTCGGGTACTGTTT
ATCAAATTTCCACCAATGAGATTGCTGCATGCCTTTAACATGGTCCTTCT
TTTCAGTGCTCATGACCCAATATCCACCCAATACCTCCTCAAAGGCGGAA
TGGCGGATAGGAAAAAAGTTAAAAAATCCTATTGCATTTTGAGGTTTTCC
AGGGCTGGCTGCTGGCTTTTGTTCAGGTTCAAGTTTGATATATTAAATCA
CATTATATGTGTACGGTATTATCATGATATCAACAAAAAGTAATAAAAAA
TATATAAAAATTGATCGAATTGAGAAGCATGAATTAATCAAATAAGCATA
CATGAAACTAGCTAGGTGAATTTAAGTAAGTCTAGGTCTAAGTCCATTAC
TTTGGCTCTAAATACTATATTCTTTAAAATGAAACTATGGTGTTTAATGG
ATACTATCTTATTTAAAGAAAAATTATGTTTCGTTCAATGGACACTATCT
TTATAAGAAACTCTTTAAACAGATTTTAATTCACTTTGGATATACTAACT
TCACCTCAGGGGGAACTTATTTAAATGGACAGTAAGTTATCCAAGAAAGT
ACCAACTTGCCAGAATGTGAGAAATCTATCCGCAATGTGAAGTGAGAAAT
GAAAAAAGCTGACTTGATTTAATGATTTATTGAAGGTTGAAGGATTCAAA
GAGGTTGGCGTTCACCTAACAATAACATTTTCCAATCTTTGATATAGTAG
CCTAGGGCTGATTTAGGCAAAAAGGACAATTTTGGGCTGGTCTGTAGGAT
CCACCATAAAATGTTTACTATCTTACACATGAAAAGATTGTTGAAACTCC
AGCCTAGGGTTTTGTTGATCTTTGGATGATTTATATTCGATCACATTACA
GTAGTTTGGTTTTCTAAGAAAGTGTAATACCAATGTGCTAGTGATAATGG
ATTTCCGCACATGGAAAACTAATATTTTTAACCTTCTAGTTGCACATTTG
GAAATTTTTTTCTAAATTGATGATAGATAGGTCGGGAAAAGAGAGNTATT
TGGAAATTTTTTCTAAATTGATGATAGATGGGTCGGGAAAAGATTACTCT
CTACAAGCTATGAAAGTAAATATCATGAATTCTGACCTTTAATTTGTGAA
TATGGGTAACCCTATGTGGTTTTATTGGGGTCGGCTTGTGAAAAGCACTC
TTCAATGATAGGGAAATTGAACATCCCAAGGTAATCATTTAAGATCGGGA
AATTTCATTTCCATAACTAGGGGGGCTGTTGCACCTTCCCTAGCTAGGGG
TTGGCTAGGAAAAAATCCAGACTTCCAGATCTGGAAACATATTTCCAAAG
CCTAGAGGATAAAAAAAATTTCCTGTATTACTTATTTTCACAATATCTGG
AAAATTGTGTATAATGATGAATAATAACTTTTAGATTAAAAAAGTTTTTC
AAAGTCCCTCTCCTACTTGCTAAATTTTCTCACAGTTTATAGGTTCATCT
ACTTATAGTTCAATTGAAATAAATACAAGTCTTGGTGATGCACTTTTGAA
GCTGCAAAAAGCATATGTCAATTGTTGTAAGTTAAGTAATTTAACATGAG
AAACCTTTTTCTATCTAGATTTTTTATAATTTTTCTCCTAGATCTTTGGC
AAATCATGCTTTATTCATTTTTTCTCTTTGGAGTTTGCATCTTTGAATCA
AAAGTAGAAAAATTGACACTAATCTGCACTTATAATGGATAACCAGCAAA
GATTGATTATGTCTAATAATGATTTTTACTAGGAGGTGTGCAAGGGATGG
GATTGTTGATATCGGAAATAGAATTGATTGGAAATCAATAATCTCCCTTC
ATGTCTTCAACTCCAATACCCCTCAACAAAGTATCCAATGGTGTCCATAA
AAACAAAAGATTAGAGGTAAAAATTTTAGTTTTGATGTTTTCATTTTTTT
GAAATGTTTTATTGTAAATTGACAGGTTGAAAAAAAATTAATAAACTGAT
AAACAGCCAAGAGCATTTCAAAAGATGAATAGTTATAATTCCTGATCTCT
TTTTATAAACTAGCAAATCCAATGACCAAATTTAACCTTACTGTTTTCCT
TTTGTTCTTCAGGGGTATTTTGAAGATGCGGCAACTGGGCTCATCAACAA
AAAACTACCCAAAGAGCTCTTACTAAGGTAATTTAAATATGTAGCTTTAC
AGTTTTTAAGCATCAAAGAGATATCCCGAGCTTATAGTAGAGGTCTTGTG
TCTACTGTGCTTAATAACAAATTGTGTTTGATGTTTTTATTTTTCATTTT
ATCTTCCTGTTACTTTTTTTCATTACCATTTACTTTTGGAAAAGTTTGAA
GCTACAGAATTTTAAGGAAATAACAACATACAATACAACGTTTTATGATA
ACTTTTTTTAATGTCTACAAATTTTTTTCTTTTTCATTTCAAGTTTGGAA
TCTCTCTTTTTTTACTTTCAAATTAACTTACTAGTATAAGATGGTACAAA
ACCTAAAAACAGCTGAATAAAGTTTGTCTAGTGCTATTACAGAATTTAAT
GTTTTTATCAATGATTTAGAATTTTCATTCATTTATTTTCCTCTGTCTCA
TTCATATCAATATGATAATGTCATCATCAGATAACTATTTATGACATCAT
CTCTCTCTCTCTCAATTGATTTATTTTCTTTTTATAGGGTTTTCTCCTTT
CTTGATATTGTTGCTCTATGTCGANCTCAATTGATTTATTTTCTTTTTGT
AGGGTTTTCTCCTTTCTTGATATTGTTGCTCTATGTCGATGTGCTCAAGT
TTCTAAGGTACACTTTATTATTTCATTCCCACTTAGTCATTGATACAAAT
CAAAACATTCTTTTAAAATGTCCTCAAATCTGTTCAAATCTGTTATTGAG
TTTTAAAAGTGTTTCTTATCAAAGAATATACTGGTGAACTGGAGCCTAAG
GACCCCGATCAGATGTATTTATAAGAATATCCATTATAAATTTAGCCCAA
AAAATTAAGAATATACTAAGAATATCTCCAGAATATCACTGAACCTTAAG
AATACCAGTTTTAGAGCATTTTTAGAGCAATTTTACCTGATGGCCAATTA
TCCCCATCTTTGCTCAAAACTTTCACAAAAACACCATGCTTTTGCTTGAT
TAAGATATGCATTACATGTTTTAAAAGTTAAAGTTGACCATCCAAGCCCA
ACGTAAACTTAAAGAATTCTTTTAAAAATATTTTTGGATGATTTATTCCA
AAATGCAAAGAATATCCATTATGAAATGGAAATACAGCATTCTTATAAGA
AAGTGTGTAATGAGGATAGCTAAGGCAAAAGCTTGACAAAACTAGACTTT
TTAAAATCAGCCCTGTGCAAAACCTACAATAAGATTAAAAGCTATTCTTT
ATTTTCCAAAATCGATTTACACTTTTTGGACCTACCCCGGTGGGGTGGAG
GTCCTATAAATTAACCTCTGTCCGTTCGTTCGTCCGTCCGTCCGTCCGTC
CGTTACCAACTTTTCTCGAGATTGAATCATAGGAATCTTTTGATTTTTGG
TACAAAGGTGCAAAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTC
GAAAAATAAATTTTAGGGCAAATTTGGGCCAAAAACGGCTAAAAAACCGT
TTTTTAGACTTTGTGAAAAATTGGATCGTTATTTTTTCTGATTTTTTGCA
TGAAAGTAGGGTACCATCATATGATGGCTCAAGCAGATTTTGCAAAAAAA
ATTTTTTGGCTCAAAAAACGCATGTTTAACTATAAGAATCACTATTAATA
AGCATACAGCAATGTTCTCAGTCAACTTACTCAATTTTTTTATGAGATAT
ATGTTCTTTTTTGCTCATGAGGGCTTACTTTTGAAGAATATGCGTGTTTA
GACATGAAATTTTGGTTGCTTGGCGTGTTATTATAGAGAAACTGGCCAAA
TTTGATATTTTTTTTACAAGCACATTATCAATTACTTAGGTATTAGCTTT
TCTCGAGATTGGCTGTTTCATTCTTTATGATTTTTTGCACAAAGATGCAT
AACTATAAACACTTGAATGTGACAGAGCCCGATTTTCGAAAAAAAAATGT
TTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGAAC
TTTGTGAAATATTGGATCATTGTTTTTTTCTGATATTTTGCATGGAAGTA
GGTAAAGATGGCTCAAGCAGATTTTTGTAAAAAAATAATTTTTCAGCTCA
AAATACGCTCTTTATCTATAAGAATCACTATTAATAAGCAACAATCAATG
TTCTTAGCCAAATTACTCAATTTTTTGATGAGATAGATGTTTTTTTTGTT
CACGAAGTCTTGCATATAAAAGAATATTTCAAGAGCTAAAATTTTGGTTT
CTAAACGTTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCA
CTATTTGTGTTCTGAATGATTGTTTAACGGTCATGCTCACGTAGATATCA
ATTATACATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACT
TGTTTTATATTTGAAAATAGTTTTACTCATTAATGATTACACATTACTCT
TTCCCATTTCAAGGCATGGAACCTCCTTGCACTTGATGGAAGTAATTGGC
AACAAGTTAACCTGTTTGAATTTCAAAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066943-exon-scaffold_462-1575043694:32831..32861 | TCONS_00066943-exon-scaffold_462-1575043694:32831..32861 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1575043694:27736..27803 | TCONS_00066943-exon-scaffold_462-1575043694:27736..27803 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1575043694:27396..27529 | TCONS_00066943-exon-scaffold_462-1575043694:27396..27529 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1575043694:27135..27199 | TCONS_00066943-exon-scaffold_462-1575043694:27135..27199 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1575043694:26505..26624 | TCONS_00066943-exon-scaffold_462-1575043694:26505..26624 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1575043694:24631..24698 | TCONS_00066943-exon-scaffold_462-1575043694:24631..24698 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1510915933:32831..32861 | TCONS_00066943-exon-scaffold_462-1510915933:32831..32861 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1510915933:27736..27803 | TCONS_00066943-exon-scaffold_462-1510915933:27736..27803 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1510915933:27396..27529 | TCONS_00066943-exon-scaffold_462-1510915933:27396..27529 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1510915933:27135..27199 | TCONS_00066943-exon-scaffold_462-1510915933:27135..27199 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1510915933:26505..26624 | TCONS_00066943-exon-scaffold_462-1510915933:26505..26624 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1510915933:24631..24698 | TCONS_00066943-exon-scaffold_462-1510915933:24631..24698 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1491911889:32831..32861 | TCONS_00066943-exon-scaffold_462-1491911889:32831..32861 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1491911889:27736..27803 | TCONS_00066943-exon-scaffold_462-1491911889:27736..27803 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1491911889:27396..27529 | TCONS_00066943-exon-scaffold_462-1491911889:27396..27529 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1491911889:27135..27199 | TCONS_00066943-exon-scaffold_462-1491911889:27135..27199 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1491911889:26505..26624 | TCONS_00066943-exon-scaffold_462-1491911889:26505..26624 | Clytia hemisphaerica | exon |
TCONS_00066943-exon-scaffold_462-1491911889:24631..24698 | TCONS_00066943-exon-scaffold_462-1491911889:24631..24698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_462 | supercontig | scaffold_462:24631..32861 - |
Blast
BLAST of TCONS_00066943 vs. Swiss-Prot (Human)
Match: FXL20 (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 6.378e-17 Identity = 32/41 (78.05%), Postives = 40/41 (97.56%), Query Frame = 2
Query: 362 RVFSFLDIVALCRCAQVSKAWNLLALDGSNWQQVNLFEFQR 484
R+FSFLD+V LCRCAQVS+AWN+LALDGSNWQ+++LF+FQR
Sbjct: 35 RIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQR 75
The following BLAST results are available for this feature:
|